-
1
-
-
38549120134
-
Modelling the influence of RKIP on the ERK signalling pathway using the stochastic process algebra PEPA
-
M. Calder, S. Gilmore, and J. Hillston, "Modelling the influence of RKIP on the ERK signalling pathway using the stochastic process algebra PEPA," Transactions on Computational Systems Biology VII, vol. 4230, pp. 1-23, 2006.
-
(2006)
Transactions on Computational Systems Biology VII
, vol.4230
, pp. 1-23
-
-
Calder, M.1
Gilmore, S.2
Hillston, J.3
-
2
-
-
79952025466
-
Towards verified biological models
-
A. Sadot, J. Fisher, D. Barak, Y. Admanit, M. J. Stern, E. J. A. Hubbard, and D. Harel, "Towards verified biological models," IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2007.
-
(2007)
IEEE/ACM Transactions on Computational Biology and Bioinformatics
-
-
Sadot, A.1
Fisher, J.2
Barak, D.3
Admanit, Y.4
Stern, M.J.5
Hubbard, E.J.A.6
Harel, D.7
-
3
-
-
78649884551
-
Equivalence arguments for complex systems simulations - A case-study
-
Luniver Press
-
T. Ghetiu, R. D. Alexander, P. S. Andrews, F. A. C. Polack, and J. Bown, "Equivalence arguments for complex systems simulations - a case-study," in Workshop on Complex Systems Modelling and Simulation. Luniver Press, 2009, pp. 101-140.
-
(2009)
Workshop on Complex Systems Modelling and Simulation
, pp. 101-140
-
-
Ghetiu, T.1
Alexander, R.D.2
Andrews, P.S.3
Polack, F.A.C.4
Bown, J.5
-
4
-
-
70449804139
-
Simulating biology: Towards understanding what the simulation shows
-
Luniver Press
-
P. S. Andrews, F. Polack, A. T. Sampson, J. Timmis, L. Scott, and M. Coles, "Simulating biology: towards understanding what the simulation shows," in Workshop on Complex Systems Modelling and Simulation. Luniver Press, 2008, pp. 93-123.
-
(2008)
Workshop on Complex Systems Modelling and Simulation
, pp. 93-123
-
-
Andrews, P.S.1
Polack, F.2
Sampson, A.T.3
Timmis, J.4
Scott, L.5
Coles, M.6
-
5
-
-
70449926889
-
The engineering of concurrent simulations of complex systems
-
IEEE Press
-
F. A. C. Polack, P. S. Andrews, and A. T. Sampson, "The engineering of concurrent simulations of complex systems," in Congress on Evolutionary Computation. IEEE Press, 2009, pp. 217-224.
-
(2009)
Congress on Evolutionary Computation
, pp. 217-224
-
-
Polack, F.A.C.1
Andrews, P.S.2
Sampson, A.T.3
-
7
-
-
0038502155
-
Simulation models as opaque thought experiments
-
MIT Press
-
E. D. Paolo, J. Noble, and S. Bullock, "Simulation models as opaque thought experiments," in Articial Life VII. MIT Press, 2000, pp. 497-506.
-
(2000)
Articial Life VII
, pp. 497-506
-
-
Paolo, E.D.1
Noble, J.2
Bullock, S.3
-
8
-
-
0036360285
-
The view from elsewhere: Perspectives on alife modelling
-
M. Wheeler, S. Bullock, E. D. Paolo, J. Noble, M. Bedau, P. Husbands, S. Kirby, and A. Seth, "The view from elsewhere: Perspectives on alife modelling," Artificial Life, vol. 8, no. 1, pp. 87-100, 2002.
-
(2002)
Artificial Life
, vol.8
, Issue.1
, pp. 87-100
-
-
Wheeler, M.1
Bullock, S.2
Paolo, E.D.3
Noble, J.4
Bedau, M.5
Husbands, P.6
Kirby, S.7
Seth, A.8
-
9
-
-
38049057680
-
Computational modelling, explicit mathematical treatments, and scientific explanation
-
MIT Press
-
J. Bryden and J. Noble, "Computational modelling, explicit mathematical treatments, and scientific explanation," in Artificial Life X. MIT Press, 2006, pp. 520-526.
-
(2006)
Artificial Life X
, pp. 520-526
-
-
Bryden, J.1
Noble, J.2
-
10
-
-
0037039434
-
Bacterial chemotaxis and the question of gain
-
D. Bray, "Bacterial chemotaxis and the question of gain," PNAS, vol. 99, no. 1, pp. 7-9, 2002.
-
(2002)
PNAS
, vol.99
, Issue.1
, pp. 7-9
-
-
Bray, D.1
-
11
-
-
0004099889
-
-
Dover Publications, transl. F. Maitland, from the French
-
H. Poincare, Science and Method. Dover Publications, 1958, transl. F. Maitland, from the French, 1908.
-
(1908)
Science and Method
-
-
Poincare, H.1
-
14
-
-
0030461611
-
Individual-based modelling in ecology: What makes the difference?
-
Online. Available
-
J. Uchmanski and V. Grimm, "Individual-based modelling in ecology: what makes the difference?" Trends in Ecology & Evolution, vol. 11, no. 10, pp. 437-441, 1996. [Online]. Available: http://dx.doi.org/10.1016/0169- 5347(96)20091-6
-
(1996)
Trends in Ecology & Evolution
, vol.11
, Issue.10
, pp. 437-441
-
-
Uchmanski, J.1
Grimm, V.2
-
15
-
-
3042829984
-
From molecular dynamics to conformation dynamics in drug design
-
M. Kirkilionis, S. Krmker, R. Rannacher, and F. Toni, Eds. Springer
-
P. Deuflhard, "From molecular dynamics to conformation dynamics in drug design," in Trends in Nonlinear Analysis, M. Kirkilionis, S. Krmker, R. Rannacher, and F. Toni, Eds. Springer, 2003, pp. 269-288.
-
(2003)
Trends in Nonlinear Analysis
, pp. 269-288
-
-
Deuflhard, P.1
-
16
-
-
84925501588
-
On non-standard numerical integration methods for biological oscillators
-
Luniver Press
-
A. Hone, "On non-standard numerical integration methods for biological oscillators," in Workshop on Complex Systems Modelling and Simulation. Luniver Press, 2009, pp. 45-66.
-
(2009)
Workshop on Complex Systems Modelling and Simulation
, pp. 45-66
-
-
Hone, A.1
-
17
-
-
24144436941
-
Evaluation of agent-oriented software methodologies - Examination of the gap between modeling and platform
-
AOSE 2004, ser. Sringer
-
J. Sudeikat, L. Braubach, A. Pokahr, and W. Lamersdorf, "Evaluation of agent-oriented software methodologies - examination of the gap between modeling and platform," in AOSE 2004, ser. LNCS, vol. 3382. Sringer, 2004, pp. 126-141.
-
(2004)
LNCS
, vol.3382
, pp. 126-141
-
-
Sudeikat, J.1
Braubach, L.2
Pokahr, A.3
Lamersdorf, W.4
-
18
-
-
84961318108
-
A survey of agent-oriented methodologies
-
International Workshop on Intelligent Agents, Agent Theories, Architectures, and Languages, ser. Springer
-
C. A. Iglesias, M. Garijo, and J. C. González, "A survey of agent-oriented methodologies," in International Workshop on Intelligent Agents, Agent Theories, Architectures, and Languages, ser. LNAI, vol. 1555. Springer, 2000, pp. 317-330.
-
(2000)
LNAI
, vol.1555
, pp. 317-330
-
-
Iglesias, C.A.1
Garijo, M.2
González, J.C.3
-
19
-
-
7044262059
-
ADELFE: A methodology for adaptive multi-agent systems engineering
-
Engineering Societies in the Agents World, ser. Springer
-
C. Bernon, M.-P. Gleizes, S. Peyruqueou, and G. Picard, "ADELFE: A methodology for adaptive multi-agent systems engineering," in Engineering Societies in the Agents World, ser. LNCS, vol. 2577. Springer, 2003, pp. 70-81.
-
(2003)
LNCS
, vol.2577
, pp. 70-81
-
-
Bernon, C.1
Gleizes, M.-P.2
Peyruqueou, S.3
Picard, G.4
-
20
-
-
35248873884
-
Prometheus: A methodology for developing intelligent agents
-
AOSE III, ser. Springer
-
L. Padgham and M. Winikoff, "Prometheus: A methodology for developing intelligent agents," in AOSE III, ser. LNCS, vol. 2585. Springer, 2003, pp. 174-185.
-
(2003)
LNCS
, vol.2585
, pp. 174-185
-
-
Padgham, L.1
Winikoff, M.2
-
22
-
-
70449786174
-
Framework for empirical exploration of emergence using multi-agent simulation
-
Luniver Press
-
O. Paunovski, G. Eleftherakis, and T. Cowling, "Framework for empirical exploration of emergence using multi-agent simulation," in Workshop on Complex Systems Modelling and Simulation. Luniver Press, 2008, pp. 1-31.
-
(2008)
Workshop on Complex Systems Modelling and Simulation
, pp. 1-31
-
-
Paunovski, O.1
Eleftherakis, G.2
Cowling, T.3
-
23
-
-
0022882925
-
The use of graphical models in model validation
-
ACM
-
R. G. Sargent, "The use of graphical models in model validation," in 18th Winter Simulation Conference. ACM, 1986, pp. 237-241.
-
(1986)
18th Winter Simulation Conference
, pp. 237-241
-
-
Sargent, R.G.1
-
24
-
-
33846673366
-
Verification and validation of simulation models
-
ACM
-
-, "Verification and validation of simulation models," in 37th Winter Simulation Conference. ACM, 2005, pp. 130-143.
-
(2005)
37th Winter Simulation Conference
, pp. 130-143
-
-
Sargent, R.G.1
-
25
-
-
33645961551
-
An architecture for modelling emergence in CA-like systems
-
European Conference: Advances in Artificial Life, ser. Springer
-
F. Polack, S. Stepney, H. Turner, P. Welch, and F. Barnes, "An architecture for modelling emergence in CA-like systems," in European Conference: Advances in Artificial Life, ser. LNAI, vol. 3630. Springer, 2005, pp. 433-442.
-
(2005)
LNAI
, vol.3630
, pp. 433-442
-
-
Polack, F.1
Stepney, S.2
Turner, H.3
Welch, P.4
Barnes, F.5
-
26
-
-
84870231907
-
Complex systems models: Engineering simulations
-
MIT press
-
F. A. C. Polack, T. Hoverd, A. T. Sampson, S. Stepney, and J. Timmis, "Complex systems models: Engineering simulations," in ALife XI. MIT press, 2008.
-
(2008)
ALife XI
-
-
Polack, F.A.C.1
Hoverd, T.2
Sampson, A.T.3
Stepney, S.4
Timmis, J.5
-
28
-
-
84928448540
-
Tests of computer simulation validity: What do they measure?
-
H. Stanislaw, "Tests of computer simulation validity: what do they measure?" Simulation and Gaming, vol. 17, no. 2, pp. 173-191, 1986.
-
(1986)
Simulation and Gaming
, vol.17
, Issue.2
, pp. 173-191
-
-
Stanislaw, H.1
-
29
-
-
70350340101
-
Using UML to model EAE and its regulatory network
-
International Conference on Artificial Immune Systems, ser. Springer
-
M. Read, P. S. Andrews, J. Timmis, and V. Kumar, "Using UML to model EAE and its regulatory network," in International Conference on Artificial Immune Systems, ser. LNCS, vol. 5666. Springer, 2009.
-
(2009)
LNCS
, vol.5666
-
-
Read, M.1
Andrews, P.S.2
Timmis, J.3
Kumar, V.4
-
31
-
-
70449883728
-
Investigating patterns for the process-oriented modelling and simulation of space in complex systems
-
MIT Press
-
P. S. Andrews, A. T. Sampson, J. M. Bjorndalen, S. Stepney, J. Timmis, D. N. Warren, and P. H. Welch, "Investigating patterns for the process-oriented modelling and simulation of space in complex systems," in Artificial Life XI. MIT Press, 2008.
-
(2008)
Artificial Life XI
-
-
Andrews, P.S.1
Sampson, A.T.2
Bjorndalen, J.M.3
Stepney, S.4
Timmis, J.5
Warren, D.N.6
Welch, P.H.7
-
32
-
-
70449814773
-
Birds on the Wall: Distributing a process-oriented simulation
-
IEEE Press
-
A. T. Sampson, J. M. Bjørndalen, and P. S. Andrews, "Birds on the Wall: Distributing a process-oriented simulation," in Congress on Evolutionary Computation. IEEE Press, 2009, pp. 225-231.
-
(2009)
Congress on Evolutionary Computation
, pp. 225-231
-
-
Sampson, A.T.1
Bjørndalen, J.M.2
Andrews, P.S.3
-
33
-
-
70450042505
-
Modelling and simulation of granuloma formation in visceral Leishmaniasis
-
IEEE Press
-
A. J. Flügge, J. Timmis, P. Andrews, J. Moore, and P. Kaye, "Modelling and simulation of granuloma formation in visceral Leishmaniasis," in Congress on Evolutionary Computation. IEEE Press, 2009, pp. 3052-3059.
-
(2009)
Congress on Evolutionary Computation
, pp. 3052-3059
-
-
Flügge, A.J.1
Timmis, J.2
Andrews, P.3
Moore, J.4
Kaye, P.5
-
34
-
-
4544377918
-
MASON: A Java multi-agent simulation library
-
Argonne National Laboratory, Online. Available
-
G. C. Balan, C. Cioffi-Revilla, S. Luke, L. Panait, and S. Paus, "MASON: A Java multi-agent simulation library," in Agent 2003 Conference. Argonne National Laboratory, 2003. [Online]. Available: http://agent2002.anl.gov/Agent2003.pdf
-
(2003)
Agent 2003 Conference
-
-
Balan, G.C.1
Cioffi-Revilla, C.2
Luke, S.3
Panait, L.4
Paus, S.5
-
35
-
-
32444443811
-
MASON: A new multi-agent simulation toolkit
-
Online. Available
-
S. Luke, C. Cioffi-Revilla, L. Panait, and K. Sullivan, "MASON: A new multi-agent simulation toolkit," in Swarmfest Workshop, 2004. [Online]. Available: http://cs.gmu.edu/ eclab/projects/mason/publications/SwarmFest04.pdf
-
Swarmfest Workshop, 2004
-
-
Luke, S.1
Cioffi-Revilla, C.2
Panait, L.3
Sullivan, K.4
-
36
-
-
0034985055
-
Induction of a type 1 regulatory CD4 T cell response following Vβ8.2 DNA vaccination results in immune deviation and protection from experimental autoimmune encephalomyelitis
-
V. Kumar, J. Maglione, J. Thatte, B. Pederson, E. Sercarz, , and E. S. Ward, "Induction of a type 1 regulatory CD4 T cell response following Vβ8.2 DNA vaccination results in immune deviation and protection from experimental autoimmune encephalomyelitis," International Immunology, vol. 13, no. 6, pp. 835-841, 2001.
-
(2001)
International Immunology
, vol.13
, Issue.6
, pp. 835-841
-
-
Kumar, V.1
Maglione, J.2
Thatte, J.3
Pederson, B.4
Sercarz, E.5
Ward, E.S.6
-
37
-
-
34548489444
-
Consequences of intraspecific variation for the structure and function of ecological communities: Part 1. Model development and predicted patterns of diversity
-
October
-
J. Bown, E.Pachepsky, A. Eberst, U. Bausenwein, P. Millard, G. Squire, and J. Crawford, "Consequences of intraspecific variation for the structure and function of ecological communities: Part 1. model development and predicted patterns of diversity," Ecological Modelling, vol. 207, no. 2-4, pp. 264-276, October 2007.
-
(2007)
Ecological Modelling
, vol.207
, Issue.2-4
, pp. 264-276
-
-
Bown, J.1
Pachepsky, E.2
Eberst, A.3
Bausenwein, U.4
Millard, P.5
Squire, G.6
Crawford, J.7
-
38
-
-
38949162890
-
Competition among plants: Concepts, individual-based modelling approaches, and a proposal for a future research strategy
-
In Press, Corrected Proof
-
U. Berger, C. Piou, K. Schiffers, and V. Grimm, "Competition among plants: Concepts, individual-based modelling approaches, and a proposal for a future research strategy," Perspectives in Plant Ecology, Evolution and Systematics, vol. In Press, Corrected Proof, 2008.
-
(2008)
Perspectives in Plant Ecology, Evolution and Systematics
-
-
Berger, U.1
Piou, C.2
Schiffers, K.3
Grimm, V.4
-
39
-
-
0007562232
-
-
Ph.D. dissertation, Department of Computer Science, University of York, yCST 99/05
-
T. P. Kelly, "Arguing safety - a systematic approach to managing safety cases," Ph.D. dissertation, Department of Computer Science, University of York, 1999, yCST 99/05.
-
(1999)
Arguing Safety - A Systematic Approach to Managing Safety Cases
-
-
Kelly, T.P.1
-
40
-
-
85178866688
-
Integrative hybrid modelling of plant shoot branching
-
Online. Available
-
P. Garnett, S. Stepney, and O. Leyser, "Integrative hybrid modelling of plant shoot branching," in Workshop on Functional Structural Plant Models, 2007, pp. 9.1-9.5. [Online]. Available: http://wwwusers.cs.york.ac.uk/ ~susan/bib/ss/nonstd/fpsm07.pdf
-
Workshop on Functional Structural Plant Models, 2007
-
-
Garnett, P.1
Stepney, S.2
Leyser, O.3
|