-
1
-
-
34548085633
-
Emergence of a convex trade-off between transmission and virulence
-
Alizon S., van Baalen M. Emergence of a convex trade-off between transmission and virulence. Am. Nat. 2005, 165(6):e156.
-
(2005)
Am. Nat.
, vol.165
, Issue.6
-
-
Alizon, S.1
van Baalen, M.2
-
2
-
-
0021085051
-
Epidemiology and genetics in the coevolution of hosts and parasites
-
Anderson R.M., May R.M. Epidemiology and genetics in the coevolution of hosts and parasites. Proc. R. Soc. B 1983, 219:281-313.
-
(1983)
Proc. R. Soc. B
, vol.219
, pp. 281-313
-
-
Anderson, R.M.1
May, R.M.2
-
3
-
-
0042697653
-
Within-host parasite dynamics, emerging trade-off, and evolution of virulence with immune system
-
André J.P., Ferdy J.P., Godelle B. Within-host parasite dynamics, emerging trade-off, and evolution of virulence with immune system. Evolution 2003, 57(7):1489-1497.
-
(2003)
Evolution
, vol.57
, Issue.7
, pp. 1489-1497
-
-
André, J.P.1
Ferdy, J.P.2
Godelle, B.3
-
4
-
-
0028163125
-
Within-host population dynamics and the evolution and maintenance of microparasite virulence
-
Antia R., Levin B.R., May R.M. Within-host population dynamics and the evolution and maintenance of microparasite virulence. Am. Nat. 1994, 144(3):457-472.
-
(1994)
Am. Nat.
, vol.144
, Issue.3
, pp. 457-472
-
-
Antia, R.1
Levin, B.R.2
May, R.M.3
-
5
-
-
34548696201
-
Modeling within-host evolution of HIV: mutation, competition and strain replacement
-
Ball C.L., Gilchrist M.A., Coombs D. Modeling within-host evolution of HIV: mutation, competition and strain replacement. Bull. Math. Biol. 2007, 69(7):2361-2385.
-
(2007)
Bull. Math. Biol.
, vol.69
, Issue.7
, pp. 2361-2385
-
-
Ball, C.L.1
Gilchrist, M.A.2
Coombs, D.3
-
6
-
-
33748198741
-
Within-host competition in genetically diverse malaria infections: parasite virulence and competitive success
-
Bell A.S., de Roode J.C., Sim D., Read A.F. Within-host competition in genetically diverse malaria infections: parasite virulence and competitive success. Evolution 2006, 60(7):1358-1371.
-
(2006)
Evolution
, vol.60
, Issue.7
, pp. 1358-1371
-
-
Bell, A.S.1
de Roode, J.C.2
Sim, D.3
Read, A.F.4
-
7
-
-
0033609141
-
Transmission bottlenecks as determinants of virulence in rapidly evolving pathogens
-
Bergstrom C.T., McElhany P., Real L.A. Transmission bottlenecks as determinants of virulence in rapidly evolving pathogens. Proc. Natl. Acad. Sci. 1999, 96(9):5095-5100.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, Issue.9
, pp. 5095-5100
-
-
Bergstrom, C.T.1
McElhany, P.2
Real, L.A.3
-
9
-
-
33847247125
-
Theory of lethal mutagenesis for viruses
-
Bull J.J., Sanjuan R., Wilke C.O. Theory of lethal mutagenesis for viruses. J. Virol. 2007, 81(6):2930-2939.
-
(2007)
J. Virol.
, vol.81
, Issue.6
, pp. 2930-2939
-
-
Bull, J.J.1
Sanjuan, R.2
Wilke, C.O.3
-
10
-
-
34548333546
-
A single positively selected West Nile viral mutation confers increased virogenesis in American crows
-
Brault A.C., Huang C.Y.H., Langevin S.A., Kinney R.M., Bowen R.A., Ramey W.N., Panella N.A., Holmes E.C., Powers A.M., Mille B.R. A single positively selected West Nile viral mutation confers increased virogenesis in American crows. Nature Genetics 2007, 39:1162-1166.
-
(2007)
Nature Genetics
, vol.39
, pp. 1162-1166
-
-
Brault, A.C.1
Huang, C.Y.H.2
Langevin, S.A.3
Kinney, R.M.4
Bowen, R.A.5
Ramey, W.N.6
Panella, N.A.7
Holmes, E.C.8
Powers, A.M.9
Mille, B.R.10
-
11
-
-
0024572669
-
A competitive exclusion principle for pathogen virulence
-
Bremermann H.J., Thieme H.R. A competitive exclusion principle for pathogen virulence. J. Math. Biol. 1989, 27:179-190.
-
(1989)
J. Math. Biol.
, vol.27
, pp. 179-190
-
-
Bremermann, H.J.1
Thieme, H.R.2
-
12
-
-
0027509085
-
Genetic bottlenecks and population passages cause profound fitness differences in RNA viruses
-
Clark D.K., Duarte E.A., Moya A., Elena S.F., Domingo E., Holland J. Genetic bottlenecks and population passages cause profound fitness differences in RNA viruses. J. Virol. 1993, 67(1):222-228.
-
(1993)
J. Virol.
, vol.67
, Issue.1
, pp. 222-228
-
-
Clark, D.K.1
Duarte, E.A.2
Moya, A.3
Elena, S.F.4
Domingo, E.5
Holland, J.6
-
13
-
-
35348941195
-
Evaluating the importance of within- and between-host selection pressures on the evolution of chronic pathogens
-
Coombs D., Gilchrist M.A., Ball C.L. Evaluating the importance of within- and between-host selection pressures on the evolution of chronic pathogens. Theor. Popul. Biol. 2007, 72:576-591.
-
(2007)
Theor. Popul. Biol.
, vol.72
, pp. 576-591
-
-
Coombs, D.1
Gilchrist, M.A.2
Ball, C.L.3
-
14
-
-
0344185353
-
Optimal viral production
-
Coombs D., Gilchrist M.A., Percus J., Perelson A.S. Optimal viral production. Bull. Math. Biol. 2003, 65:1003-1023.
-
(2003)
Bull. Math. Biol.
, vol.65
, pp. 1003-1023
-
-
Coombs, D.1
Gilchrist, M.A.2
Percus, J.3
Perelson, A.S.4
-
15
-
-
21144456523
-
Virulence and competitive ability in genetically diverse malaria infections
-
de Roode J.C., Pansini R., Cheesman S.J., Helinski M.E.H., Huijben S., Wargo A.R., Bell A.S., Chan B.H.K., Walliker D., Read A.F. Virulence and competitive ability in genetically diverse malaria infections. Proc. Natl. Acad. Sci. USA 2005, 102:7624-7628.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 7624-7628
-
-
de Roode, J.C.1
Pansini, R.2
Cheesman, S.J.3
Helinski, M.E.H.4
Huijben, S.5
Wargo, A.R.6
Bell, A.S.7
Chan, B.H.K.8
Walliker, D.9
Read, A.F.10
-
17
-
-
0015133749
-
Self-organization of matter and the evolution of biological macromolecules
-
Eigen M. Self-organization of matter and the evolution of biological macromolecules. Naturwissenschaften 1971, 58:465-523.
-
(1971)
Naturwissenschaften
, vol.58
, pp. 465-523
-
-
Eigen, M.1
-
19
-
-
0030093154
-
Models of parasite virulence
-
Frank S.A. Models of parasite virulence. Q. Rev. Biol. 1996, 71:37-78.
-
(1996)
Q. Rev. Biol.
, vol.71
, pp. 37-78
-
-
Frank, S.A.1
-
20
-
-
0347598162
-
Trade-offs and the evolution of virulence of microparasites: do details matter?
-
Ganusov V.V., Antia R. Trade-offs and the evolution of virulence of microparasites: do details matter?. Theor. Popul. Biol. 2003, 64:211-220.
-
(2003)
Theor. Popul. Biol.
, vol.64
, pp. 211-220
-
-
Ganusov, V.V.1
Antia, R.2
-
21
-
-
31344431556
-
Evolution of virulence: interdependence, constraints and selection using nested models
-
Gilchrist M.A., Coombs D. Evolution of virulence: interdependence, constraints and selection using nested models. Theor. Popul. Biol. 2006, 69:145-153.
-
(2006)
Theor. Popul. Biol.
, vol.69
, pp. 145-153
-
-
Gilchrist, M.A.1
Coombs, D.2
-
22
-
-
2942670254
-
Optimizing within host viral fitness: infected cell lifespan and virion production rate
-
Gilchrist M.A., Coombs D., Perelson A.S. Optimizing within host viral fitness: infected cell lifespan and virion production rate. J. Theor. Biol. 2004, 229:281-288.
-
(2004)
J. Theor. Biol.
, vol.229
, pp. 281-288
-
-
Gilchrist, M.A.1
Coombs, D.2
Perelson, A.S.3
-
23
-
-
0036402639
-
Modeling host-parasite coevolution: a nested approach based on mechanistic models
-
Gilchrist M.A., Sasaki A. Modeling host-parasite coevolution: a nested approach based on mechanistic models. J. Theor. Biol. 2002, 218:289-308.
-
(2002)
J. Theor. Biol.
, vol.218
, pp. 289-308
-
-
Gilchrist, M.A.1
Sasaki, A.2
-
24
-
-
2942633190
-
Some basic properties of immune selection
-
Iwasa Y., Michor F., Nowak M.A. Some basic properties of immune selection. J. Theor. Biol. 2004, 229:179-188.
-
(2004)
J. Theor. Biol.
, vol.229
, pp. 179-188
-
-
Iwasa, Y.1
Michor, F.2
Nowak, M.A.3
-
25
-
-
6344228566
-
Virus evolution within patients increases pathogenicity
-
Iwasa Y., Michor F., Nowak M.A. Virus evolution within patients increases pathogenicity. J. Theor. Biol. 2005, 232:17-26.
-
(2005)
J. Theor. Biol.
, vol.232
, pp. 17-26
-
-
Iwasa, Y.1
Michor, F.2
Nowak, M.A.3
-
26
-
-
0021733694
-
Deleterious mutations as an evolutionary factor: 1. The advantage of recombination
-
Kondrashov A.S. Deleterious mutations as an evolutionary factor: 1. The advantage of recombination. Genet. Res. 1984, 44:199-217.
-
(1984)
Genet. Res.
, vol.44
, pp. 199-217
-
-
Kondrashov, A.S.1
-
27
-
-
33748428600
-
Interference among deleterious mutations favours sex and recombination in finite populations
-
Keightley P.D., Otto S.P. Interference among deleterious mutations favours sex and recombination in finite populations. Nature 2006, 443:89-92.
-
(2006)
Nature
, vol.443
, pp. 89-92
-
-
Keightley, P.D.1
Otto, S.P.2
-
28
-
-
0028162824
-
Risk of population extinction from fixation of new deleterious mutations
-
Lande R. Risk of population extinction from fixation of new deleterious mutations. Evolution 1994, 48(5):1460-1469.
-
(1994)
Evolution
, vol.48
, Issue.5
, pp. 1460-1469
-
-
Lande, R.1
-
29
-
-
73349098458
-
Antigenic diversity, transmission mechanisms, and the evolution of pathogens
-
Lange A., Ferguson N.M. Antigenic diversity, transmission mechanisms, and the evolution of pathogens. PLoS Comput. Biol. 2009, 5:e1000536.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Lange, A.1
Ferguson, N.M.2
-
30
-
-
0000432785
-
Selection of intermediate rates on increase in host-parasite systems
-
Levin S., Pimentel D. Selection of intermediate rates on increase in host-parasite systems. Am. Nat. 1981, 117(3):308-315.
-
(1981)
Am. Nat.
, vol.117
, Issue.3
, pp. 308-315
-
-
Levin, S.1
Pimentel, D.2
-
31
-
-
0028203644
-
Short-sighted evolution and the virulence of pathogenic microorganisms
-
Levin B.R., Bull J.J. Short-sighted evolution and the virulence of pathogenic microorganisms. Trends Microbiol. 1994, 2:76-81.
-
(1994)
Trends Microbiol.
, vol.2
, pp. 76-81
-
-
Levin, B.R.1
Bull, J.J.2
-
32
-
-
73449108787
-
The evolutionary dynamics of a rapidly mutating virus within and between hosts: the case of hepatitis C virus
-
Luciani F., Alizon S. The evolutionary dynamics of a rapidly mutating virus within and between hosts: the case of hepatitis C virus. PLoS Comput. Biol. 2009, 5:e1000565.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Luciani, F.1
Alizon, S.2
-
33
-
-
0025682946
-
Mutation load and the survival of small populations
-
Lynch M., Gabriel W. Mutation load and the survival of small populations. Evolution 1990, 44(7):1725-1737.
-
(1990)
Evolution
, vol.44
, Issue.7
, pp. 1725-1737
-
-
Lynch, M.1
Gabriel, W.2
-
34
-
-
77954318388
-
Lethal mutagenesis and evolutionary epidemiology
-
Martin G., Gandon S. Lethal mutagenesis and evolutionary epidemiology. Philos. Trans. B 2010, 365(1548):1953-1968.
-
(2010)
Philos. Trans. B
, vol.365
, Issue.1548
, pp. 1953-1968
-
-
Martin, G.1
Gandon, S.2
-
36
-
-
0034099647
-
The effects of Hill-Robertson interference between weakly selected mutations on patterns of molecular evolution and variation
-
McVean G.A.T., Charlesworth B. The effects of Hill-Robertson interference between weakly selected mutations on patterns of molecular evolution and variation. Genetics 2000, 155:929-944.
-
(2000)
Genetics
, vol.155
, pp. 929-944
-
-
McVean, G.A.T.1
Charlesworth, B.2
-
37
-
-
49049118638
-
Linking within- and between-host dynamics in the evolutionary epidemiology of infectious diseases
-
Mideo N., Alizon S., Day T. Linking within- and between-host dynamics in the evolutionary epidemiology of infectious diseases. Trends Ecol. Evol. 2008, 23:511-517.
-
(2008)
Trends Ecol. Evol.
, vol.23
, pp. 511-517
-
-
Mideo, N.1
Alizon, S.2
Day, T.3
-
38
-
-
33847044691
-
The evolution of epidemic influenza
-
Nelson M.I., Holmes E.C. The evolution of epidemic influenza. Nat. Rev. Gen. 2007, 8:196-204.
-
(2007)
Nat. Rev. Gen.
, vol.8
, pp. 196-204
-
-
Nelson, M.I.1
Holmes, E.C.2
-
39
-
-
0029072721
-
Exponential increases of RNA virus fitness during large population transmissions
-
Novella I.S., Duarte E.A., Elena S.F., Moya A., Domingo E., Holland J.J. Exponential increases of RNA virus fitness during large population transmissions. Proc. Natl. Acad. Sci. 1995, 92:5841-5844.
-
(1995)
Proc. Natl. Acad. Sci.
, vol.92
, pp. 5841-5844
-
-
Novella, I.S.1
Duarte, E.A.2
Elena, S.F.3
Moya, A.4
Domingo, E.5
Holland, J.J.6
-
40
-
-
0025639078
-
The evolutionary dynamics of HIV-1 quasispecies and the development of immunodeficiency disease
-
Nowak M.A., May R.M., ANderson R.M. The evolutionary dynamics of HIV-1 quasispecies and the development of immunodeficiency disease. AIDS 1990, 4:1095-1103.
-
(1990)
AIDS
, vol.4
, pp. 1095-1103
-
-
Nowak, M.A.1
May, R.M.2
Anderson, R.M.3
-
41
-
-
20044379738
-
Intersegmental recombination between the haemagglutinin and matrix genes was responsible for the emergence of a highly pathogenic H7N3 avian influenza virus in British Columbia
-
Pasick J., Handel K., Robinson J., Copps J., Ridd D., Hills K., Kehler H., Cottam-Birt C., Neufeld J., Berhane Y., Czu S. Intersegmental recombination between the haemagglutinin and matrix genes was responsible for the emergence of a highly pathogenic H7N3 avian influenza virus in British Columbia. J. Gen. Virol. 2005, 86:727-731.
-
(2005)
J. Gen. Virol.
, vol.86
, pp. 727-731
-
-
Pasick, J.1
Handel, K.2
Robinson, J.3
Copps, J.4
Ridd, D.5
Hills, K.6
Kehler, H.7
Cottam-Birt, C.8
Neufeld, J.9
Berhane, Y.10
Czu, S.11
-
42
-
-
67651100815
-
Evolutionary analysis of the dynamics of infectious disease
-
Pybus O.G., Rambaut A. Evolutionary analysis of the dynamics of infectious disease. Nat. Rev. Gen. 2009, 10:540-550.
-
(2009)
Nat. Rev. Gen.
, vol.10
, pp. 540-550
-
-
Pybus, O.G.1
Rambaut, A.2
-
43
-
-
33847649474
-
Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution
-
Pybus O.G., Rambaut A., Belshaw R., Freckleton R.P., Drummond A.J., Holmes E.C. Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution. Mol. Biol. Evol. 2007, 24(3):845-852.
-
(2007)
Mol. Biol. Evol.
, vol.24
, Issue.3
, pp. 845-852
-
-
Pybus, O.G.1
Rambaut, A.2
Belshaw, R.3
Freckleton, R.P.4
Drummond, A.J.5
Holmes, E.C.6
-
44
-
-
44449164435
-
The genomic and epidemiological dynamics of human influenza A virus
-
Rambaut A., Pybus O.G., Nelson I., Viboud C., Taubenberger J.K., Holmes E.C. The genomic and epidemiological dynamics of human influenza A virus. Nature 2008, 453:615-619.
-
(2008)
Nature
, vol.453
, pp. 615-619
-
-
Rambaut, A.1
Pybus, O.G.2
Nelson, I.3
Viboud, C.4
Taubenberger, J.K.5
Holmes, E.C.6
-
45
-
-
0028326175
-
The evolution of virulence
-
Read A. The evolution of virulence. Trends Microbiol. 1994, 2:73-76.
-
(1994)
Trends Microbiol.
, vol.2
, pp. 73-76
-
-
Read, A.1
-
47
-
-
12144289244
-
Recombination resulting in virulence shift in avian influenza outbreak, Chile
-
Suarez D.L., Senne D.A., Banks J., Brown I.H., Essen S.C., Lee C.W., Manvell R.J., Mathieu-Benson C., Moreno V., Pedersen J.C., Panigrahy B., Rojas H., Spackman E., Alexander D.J. Recombination resulting in virulence shift in avian influenza outbreak, Chile. Emerg. Infect. Dis. 2004, 10(4):693-699.
-
(2004)
Emerg. Infect. Dis.
, vol.10
, Issue.4
, pp. 693-699
-
-
Suarez, D.L.1
Senne, D.A.2
Banks, J.3
Brown, I.H.4
Essen, S.C.5
Lee, C.W.6
Manvell, R.J.7
Mathieu-Benson, C.8
Moreno, V.9
Pedersen, J.C.10
Panigrahy, B.11
Rojas, H.12
Spackman, E.13
Alexander, D.J.14
-
48
-
-
21644477889
-
Changes in human immunodeficiency virus type 1 fitness and genetic diversity during disease progression
-
Troyer R.M., Collins K.R., Abraha A., Fraundorf E., Moore D.M., Krizan R.W., Toossi Z., Colebunders R.L., Jensen M.A., Mullins J.I., Vanham G., Arts E.J. Changes in human immunodeficiency virus type 1 fitness and genetic diversity during disease progression. J. Virol. 2005, 79:9006-9018.
-
(2005)
J. Virol.
, vol.79
, pp. 9006-9018
-
-
Troyer, R.M.1
Collins, K.R.2
Abraha, A.3
Fraundorf, E.4
Moore, D.M.5
Krizan, R.W.6
Toossi, Z.7
Colebunders, R.L.8
Jensen, M.A.9
Mullins, J.I.10
Vanham, G.11
Arts, E.J.12
-
49
-
-
0028995656
-
The dynamics of multiple infection and the evolution of virulence
-
van Baalen M., Sabelis M.W. The dynamics of multiple infection and the evolution of virulence. Am. Nat. 1995, 146:881-910.
-
(1995)
Am. Nat.
, vol.146
, pp. 881-910
-
-
van Baalen, M.1
Sabelis, M.W.2
-
50
-
-
24944485118
-
Quasispecies theory in the context of population genetics
-
Wilke C.O. Quasispecies theory in the context of population genetics. BMC Evol. Biol. 2005, 5:44.
-
(2005)
BMC Evol. Biol.
, vol.5
, pp. 44
-
-
Wilke, C.O.1
|