Taxonomy of Desmodesmus serratus (Chlorophyceae, Chlorophyta) and related taxa on the basis of morphological and DNA sequence data

Phycologia

Volumn 50, Issue 1, 2011, Pages 23-56

  Fawley, Marvin W ^a,b   Fawley, Karen P ^a   Hegewald, Eberhard ^c  

^a UNIVERSITY OF ARKANSAS   (United States)

^b NORTH DAKOTA STATE UNIVERSITY   (United States)

^c FORSCHUNGSZENTRUM JÜLICH   (Germany)

Author keywords

Compensatory base change; Desmodesmus itascaensis; Desmodesmus perdix; Desmodesmus pseudoserratus; Desmodesmus santosii; Desmodesmus serratoides; Desmodesmus serratus; Genetic recombination; New species; Phylogeny; RbcL; Ribosomal internal transcribed spacer

Indexed keywords

CHLOROPHYCEAE; CHLOROPHYTA; DESMODESMUS; DESMODESMUS SERRATUS; PERDIX;

EID: 79951848560     PISSN: 00318884     EISSN: None     Source Type: Journal    
DOI: 10.2216/10-16.1     Document Type: Article

References (51)

1. ALVERSON A.J. 2008. Molecular systematics and the diatom species. Protist 159: 339-353.
2. AN S.S., FRIEDL T. & HEGEWALD E. 1999. Phylogenetic relationships of Scenedesmus and Scenedesmus-like coccoid green algae as inferred from ITS-2 rDNA sequence comparisons. Plant Biology 1: 418-428. (Pubitemid 29345267)
3. BOHLIN K. 1901. É tude sur la flore algologique d'eau douce des Acores. Bihang till Kongliga Svenska Vetenskaps-Akademiens Handlingar 27: 1-85.
4. CASTELEYN G., ADAMS N.G., VANORMELINGEN P., DEBEER A.-E., SABBE K. & VYVERMAN W. 2009. Natural hybrids in the marine diatom Pseudo-nitzschia pungens (Bacillariophyceae): Genetic and morphological evidence. Protist 160: 343-354.
5. COLEMAN A.W. 2003. ITS2 is a double-edged tool for eukaryote evolutionary comparisons. Trends in Genetics 19: 370-375. (Pubitemid 36794538)
6. COLEMAN A.W. 2009. Is there a molecular key to the level of ''biological species'' in eukaryotes? A DNA guide. Molecular Phylogenetics and Evolution 50: 197-203.
7. CHODAT R. 1926. Scenedesmus. Etude de génétique, de systèmatique expérimentale et d'hydrobiologie. Revue d'Hydrologie 3: 71-258.
8. CORDA A.J.C. 1839. Observations sur les Euastrées et les Cosmariées. Almanach de Carlsbad 9: 213-244.
9. DE QUEIROZ K. 2007. Species concepts and species delimitation. Systematic Biology 56: 879-886. (Pubitemid 350129638)
10. FAWLEY M.W. & FAWLEY K.P. 2004. A simple and rapid technique for the isolation of DNA from microalgae. Journal of Phycology 40: 223-225. (Pubitemid 38241652)
11. FAWLEY M.W., DOUGLAS C.A., STEWART K.D. & MATTOX K.R. 1990. Light-harvesting pigment-protein complexes of the Ulvophyceae (Chlorophyta): Characterization and phylogenetic significance. Journal of Phycology 26: 186-195.
12. FAWLEY M.W., FAWLEY K.P. & OWEN H.A. 2005. Diversity and ecology of small cocoid green algae from Lake Itasca, Minnesota, USA, including Meyerella planktonica, gen. et sp. nov. (Trebouxiophyceae, Chlorophyta). Phycologia 44: 35-48. (Pubitemid 40274199)
13. FARRIS J.S., KÄLLERSJÖM., KLUGE A.G. & BULT C. 1995. Constructing a significance test for incongruence. Systematic Biology 44: 570-572.
14. FELINER G.N. & ROSSELLÓJ.A. 2007. Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in specieslevel evolutionary studies in plants. Molecular Phylogenetics and Evolution 44: 911-919. (Pubitemid 47048931)
15. FINLAY B.J. 2002. Global dispersal of free-living microbial eukaryotic species. Science 296: 1061-1063. (Pubitemid 34517112)
16. HASEGAWA M., KISHINO H. & YANO T. 1985. Dating of human- ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22: 160-174. (Pubitemid 16227864)
17. HEGEWALD E. & AN S.S. 1997. Scenedesmus serratus (Corda) Bohlin var. serratus. In: Photomicrographs of the freshwater algae (Ed. by T. Yamagishi & M. Akiyama), 19, 62 pp. Uchida Rokakuho, Tokyo.
18. HEGEWALD E. & KRIENITZ L. 1993. Studies on Scenedesmus costato-granulatus var. elegans (Hortob.) Hegewald et Krienitz comb. et stat. nov. Archives of Hydrobiology Supplement 98, Algological Studies 70: 1-10.
19. HEGEWALD E. & SCHNEPF E. 1978. Investigations on the lakes of Peru and their phytoplankton. 3. Three new taxa of Scenedesmus from tropical Peru. Archives of Hydrobiology Supplement 51, Algological Studies 20: 308-317.
20. HEGEWALD E. & SILVA P. 1988. Annotated catalogue of Scenedesmus and nomenclaturally related genera including original descriptions and figures. Bibliotheca Phycologica 80. J. Cramer, Berlin-Stuttgart. 587 pp.
21. HEGEWALD E., HINDÁK F. & SCHNEPF E. 1990. Studies on the genus Scenedesmus Meyen (Chlorophyta, Chlorococcales) from Southern India, with special reference to the cell wall ultrastructure. Nova Hedwigia, Beiheft 99: 1-75, pl. 1-135.
22. HEGEWALD E., KRIENITZ L. & SCHNEPF E. 1994. Studies on Scenedesmus costato-granulatus Skuja. Nova Hedwigia 59: 97-127. (Pubitemid 2136599)
23. HEGEWALD E., SCHMIDT A., BRABAND A. & TSARENKE P. 2005. Revision of the Desmodesmus (Sphaeropleales, Scenedesmaceae) species with lateral spines-2. The multi-spined to spineless taxa. Algological Studies 116: 1-38. (Pubitemid 41268322)
24. HEGEWALD E.H. 1997. Taxonomy and phylogeny of Scenedesmus. Korean Journal of Phycology 12: 235-246.
25. HINDÁK F. 1990. Studies on the chlorococcal algae (Chlorophyceae). V. Biologia Práce 1990: 1-225.
26. JÄRNEFELT H. 1952. Plankton als Indikator der Trophiegruppen der Seen. Annales Academiae Scientiarum Fennicae 18: 1-29.
27. JOHNSON J.L. 2005. Diversity of Scenedesmus and Desmodesmus. Master's thesis. North Dakota State University, Fargo, North Dakota. 86 pp.
28. JOHNSON J.L., FAWLEY M.W. & FAWLEY K.P. 2007. The diversity of Scenedesmus and Desmodesmus (Chlorophyceae) in Itasca State Park, Minnesota, USA. Phycologia 46: 214-229. (Pubitemid 46417993)
29. KOMÁREK J. & FOTT B. 1983. Chlorophyceae (Grünalgen), Ordnung Chlorococcales. Das Phytoplankton des Sübwassers. Die Binnengewässer. 16, 7. Teil, 1. Hä lfte: 1-1044.
30. LEWIS L.A. & FLETCHER V.R. 2004. Cryptic species of Scenedesmus (Chlorophyta) from desert soil communities of western North America. Journal of Phycology 40: 1127-1137. (Pubitemid 40025136)
31. LÜRLING M. 2003. Phenotypic plasticity in the green algae Desmodesmus and Scenedesmus with special reference to the induction of defensive morphology. Annals of Limnology - International Journal of Limnology 39: 85-101. (Pubitemid 37060359)
32. MADDISON D.R. & MADDISON W.P. 2000. MacClade 4: Analysis of phylogeny and character evolution. Sinauer Associates, Sunderland, Massachusetts.
33. MARTIN D. & RYBICKI E. 2000. RDP: Detection of recombination amongst aligned sequences. Bioinformatics 16: 562-563.
34. MARTIN D.P., WILLIAMSON C. & POSADA D. 2005. RDP2: Recombination detection and analysis from sequence alignments. Bioinformatics 21: 260-262. (Pubitemid 40202028)
35. MATHEWS D.H., SABINA J., ZUKER M. & TURNER D.H. 1999. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. Journal of Molecular Biology 288: 911-940. (Pubitemid 29248642)
36. MÜLLER T., PHILIPPI N., DANDEKAR T., SCHULTZ J. & WOLF M. 2007. Distinguishing species. RNA 13: 1469-1472. (Pubitemid 47347417)
37. PHILIPOSE M.T. 1967. Chlorococcales. Indian Council of Agricultural Research, New Delhi. 365 pp.
38. POSADA D. 2006. ModelTest Server: A web-based tool for the statistical selection of models of nucleotide substitution online. Nucleic Acids Research 34: W700-W703. (Pubitemid 44529861)
39. POSADA D. & CRANDALL K.A. 1998. Modeltest: Testing the model of DNA substitution. Bioinformatics 14, (9), 817-818. (Pubitemid 28552116)
40. SCHLÜTER M., GROENEWEG J. & SOEDER C.J. 1987. Impact on rotifer grazing on population dynamics of green microalgae in high-rate ponds. Water Resources 21: 1293-1297. (Pubitemid 17165571)
41. SMITH G.M. 1916. A monograph of the algal genus Scenedesmus based upon pure culture studies. Transactions of the Wisconsin Academy of Sciences, Arts, and Letters 18: 422-528.
42. SWOFFORD D.L. 2002. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
43. THUNMARK S. 1945. Zur Soziologie des Sübwasserplanktons. Folia Limnologica Scandinavica 3: 1-66.
44. TRAINOR F.J. 2009. Breaking the habit. Integrating plasticity into taxonomy. Systematics and Biodiversity 7: 95-100.
45. TSARENKO P., HEGEWALD E. & KRIENITZ L. 1996. LM and SEM studies on Scenedesmus of Lake Tollense (Baltic Lake District, Germany). Archives of Hydrobiology, Supplement 116 Algological Studies 82: 13-36.
46. TSARENKO P., HEGEWALD E. & BRABAND A. 2005. Scenedesmuslike algae of Ukraine. 1. Diversity and rare taxa from water bodies in Volyn Polissia. Algological Studies 118: 1-45. (Pubitemid 43398242)
47. VAN HANNEN E.J., LURLING M. & VAN DONK E. 2000. Sequence analysis of the ITS-2 region: A tool to identify strains of Scenedesmus. Journal of Phycology 36: 605-607.
48. VANORMELINGEN P., HEGEWALD E., BRABAND A., KITSCHKE M., FRIEDL T., SABBE K. & VYVERMAN W. 2007. The systematics of a small spineless Desmodesmus taxon, D. costato-granulatus (Sphaeropleales, Chlorophyceae), based on ITS-2rDNA sequence analyses and cell wall morphology. Journal of Phycology 43: 378-396. (Pubitemid 46496655)
49. WHITE T.J., BRUNS T., LEE S. & TAYLOR J.W. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: A guide to methods and applications (Ed. by M.A. Innis, D.H. Gelfand, J.J.U. Sninsky & T.J. White), pp. 315-322. Academic Press, New York.
50. ZUKER M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research 31: 3406-15. (Pubitemid 37442169)
51. ZWICKL D.J. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence data sets under the maximum likelihood criterion. Ph.D. dissertation. The University of Texas at Austin.