메뉴 건너뛰기




Volumn 92, Issue 3, 2011, Pages 516-527

Genetic characterization of Japanese encephalitis virus genotype II strains isolated from 1951 to 1978

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; NONSTRUCTURAL PROTEIN 4B; NUCLEOTIDE;

EID: 79951783216     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.027110-0     Document Type: Article
Times cited : (18)

References (37)
  • 1
    • 34347367279 scopus 로고
    • Japanese encephalitis acquired in Australia
    • Anon.
    • Anon. (1995). Japanese encephalitis acquired in Australia. Emerg Infect Dis 1, 102.
    • (1995) Emerg Infect Dis , vol.1 , pp. 102
  • 2
    • 73149097610 scopus 로고    scopus 로고
    • Japanese encephalitis virus
    • 3rd edn, Edited by B. W. J. Mahy & M. V. H. van Regenmortel. Oxford: Elsevier
    • Barrett, A. D. T. (2008). Japanese encephalitis virus. In Encyclopaedia of Virology, 3rd edn, vol. 5, pp. 182-188. Edited by B. W. J. Mahy & M. V. H. van Regenmortel. Oxford: Elsevier.
    • (2008) Encyclopaedia of Virology , vol.5 , pp. 182-188
    • Barrett, A.D.T.1
  • 3
    • 0025116324 scopus 로고
    • Flavivirus genome organization, expression, and replication
    • Chambers, T. J., Hahn, C. S., Galler, R. & Rice, C. M. (1990). Flavivirus genome organization, expression, and replication. Annu Rev Microbiol 44, 649-688.
    • (1990) Annu Rev Microbiol , vol.44 , pp. 649-688
    • Chambers, T.J.1    Hahn, C.S.2    Galler, R.3    Rice, C.M.4
  • 4
    • 0025609214 scopus 로고
    • Genetic variation of Japanese encephalitis virus in nature
    • Chen, W. R., Tesh, R. B. & Rico-Hesse, R. (1990). Genetic variation of Japanese encephalitis virus in nature. J Gen Virol 71, 2915-2922.
    • (1990) J Gen Virol , vol.71 , pp. 2915-2922
    • Chen, W.R.1    Tesh, R.B.2    Rico-Hesse, R.3
  • 5
    • 0026651728 scopus 로고
    • A new genotype of Japanese encephalitis virus from Indonesia
    • Chen, W. R., Rico-Hesse, R. & Tesh, R. B. (1992). A new genotype of Japanese encephalitis virus from Indonesia. Am J Trop Med Hyg 47, 61-69.
    • (1992) Am J Trop Med Hyg , vol.47 , pp. 61-69
    • Chen, W.R.1    Rico-Hesse, R.2    Tesh, R.B.3
  • 6
    • 35448972183 scopus 로고    scopus 로고
    • Differential effects of mutations in NS4B on West Nile virus replication and inhibition of interferon signaling
    • DOI 10.1128/JVI.00791-07
    • Evans, J. D. & Seeger, C. (2007). Differential effects of mutations in NS4B on West Nile virus replication and inhibition of interferon signaling. J Virol 81, 11809-11816. (Pubitemid 47623813)
    • (2007) Journal of Virology , vol.81 , Issue.21 , pp. 11809-11816
    • Evans, J.D.1    Seeger, C.2
  • 7
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny inference package
    • version 3.2
    • Felsenstein, J. (1989). PHYLIP - phylogeny inference package (version 3.2). Cladistics 5, 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 8
    • 0000969903 scopus 로고
    • Japanese encephalitis in the USSR
    • Grascenkov, N. I. (1964). Japanese encephalitis in the USSR. Bull World Health Organ 30, 161-172.
    • (1964) Bull World Health Organ , vol.30 , pp. 161-172
    • Grascenkov, N.I.1
  • 9
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 11
    • 0027943353 scopus 로고
    • Detection of West Nile and Japanese encephalitis viral genome sequences in cerebrospinal fluid from acute encephalitis cases in Karachi, Pakistan
    • Igarashi, A., Tanaka, M., Morita, K., Takasu, T., Ahmed, A., Akram, D. S. & Waqar, M. A. (1994). Detection of West Nile and Japanese encephalitis viral genome sequences in cerebrospinal fluid from acute encephalitis cases in Karachi, Pakistan. Microbiol Immunol 38, 827-830. (Pubitemid 24339459)
    • (1994) Microbiology and Immunology , vol.38 , Issue.10 , pp. 827-830
    • Igarashi, A.1    Tanaka, M.2    Morita, K.3    Talasu, T.4    Ahmed, A.5    Ahmed, A.6    Akram, D.S.7    Waqar, M.A.8
  • 12
    • 0034466398 scopus 로고    scopus 로고
    • Isolation of Japanese encephalitis virus from mosquitoes (Diptera: Culicidae) collected in the Western Province of Papua New Guinea, 1997-1998
    • Johansen, C. A., van den Hurk, A. F., Ritchie, S. A., Zborowski, P., Nisbet, D. J., Paru, R., Bockarie, M. J., Macdonald, J., Drew, A. C. & other authors (2000). Isolation of Japanese encephalitis virus from mosquitoes (Diptera: Culicidae) collected in the Western Province of Papua New Guinea, 1997-1998. Am J Trop Med Hyg 62, 631-638.
    • (2000) Am J Trop Med Hyg , vol.62 , pp. 631-638
    • Johansen, C.A.1    Van Den Hurk, A.F.2    Ritchie, S.A.3    Zborowski, P.4    Nisbet, D.J.5    Paru, R.6    Bockarie, M.J.7    Macdonald, J.8    Drew, A.C.9
  • 13
    • 17744396121 scopus 로고    scopus 로고
    • Not so different after all: A comparison of methods for detecting amino acid sites under selection
    • DOI 10.1093/molbev/msi105
    • Kosakovsky Pond, S. L. & Frost, S. D. (2005). Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol 22, 1208-1222. (Pubitemid 40577758)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.5 , pp. 1208-1222
    • Kosakovsky, P.S.L.1    Frost, S.D.W.2
  • 15
    • 0033824415 scopus 로고    scopus 로고
    • RDP: Detection of recombination amongst aligned sequences
    • Martin, D. & Rybicki, E. (2000). RDP: detection of recombination amongst aligned sequences. Bioinformatics 16, 562-563.
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 16
    • 13144283628 scopus 로고    scopus 로고
    • A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
    • DOI 10.1089/aid.2005.21.98
    • Martin, D. P., Posada, D., Crandall, K. A. & Williamson, C. (2005a). A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res Hum Retroviruses 21, 98-102. (Pubitemid 40179806)
    • (2005) AIDS Research and Human Retroviruses , vol.21 , Issue.1 , pp. 98-102
    • Martin, D.P.1    Posada, D.2    Crandall, K.A.3    Williamson, C.4
  • 17
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: Recombination detection and analysis from sequence alignments
    • DOI 10.1093/bioinformatics/bth490
    • Martin, D. P., Williamson, C. & Posada, D. (2005b). RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21, 260-262. (Pubitemid 40202028)
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3
  • 18
    • 34547949535 scopus 로고    scopus 로고
    • Crystal structure and activity of Kunjin virus NS3 helicase; protease and helicase domain assembly in the full length NS3 protein
    • Mastrangelo, E., Milani, M., Bollati, M., Selisko, B., Peyrane, F., Pandini, V., Sorrentino, G., Canard, B., Konarev, P. V. & other authors (2007). Crystal structure and activity of Kunjin virus NS3 helicase; protease and helicase domain assembly in the full length NS3 protein. J Mol Biol 372, 444-455.
    • (2007) J Mol Biol , vol.372 , pp. 444-455
    • Mastrangelo, E.1    Milani, M.2    Bollati, M.3    Selisko, B.4    Peyrane, F.5    Pandini, V.6    Sorrentino, G.7    Canard, B.8    Konarev, P.V.9
  • 19
    • 79951804708 scopus 로고    scopus 로고
    • Phylogeography of West Nile virus: From the cradle of evolution in Africa to the New World
    • doi: 10.1128/JVI.01963-10 (Epub ahead of print)
    • May, F. J., Davis, C. T., Tesh, R. B. & Barrett, A. D. T. (2011). Phylogeography of West Nile virus: from the cradle of evolution in Africa to the New World. J Virol, doi: 10.1128/JVI.01963-10 (Epub ahead of print).
    • (2011) J Virol
    • May, F.J.1    Davis, C.T.2    Tesh, R.B.3    Barrett, A.D.T.4
  • 22
    • 2942661866 scopus 로고    scopus 로고
    • Shift in Japanese encephalitis virus (JEV) genotype circulating in northern Vietnam: Implications for frequent introductions of JEV from Southeast Asia to East Asia
    • Nga, P. T., del Carmen Parquet, M., Cuong, V. D., Ma, S. P., Hasebe, F., Inoue, S., Makino, Y., Takagi, M., Nam, V. S. & Morita, K. (2004). Shift in Japanese encephalitis virus (JEV) genotype circulating in northern Vietnam: implications for frequent introductions of JEV from Southeast Asia to East Asia. J Gen Virol 85, 1625-1631.
    • (2004) J Gen Virol , vol.85 , pp. 1625-1631
    • Nga, P.T.1    Del Carmen Parquet, M.2    Cuong, V.D.3    Ma, S.P.4    Hasebe, F.5    Inoue, S.6    Makino, Y.7    Takagi, M.8    Nam, V.S.9    Morita, K.10
  • 24
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • DOI 10.1006/viro.1999.0056
    • Padidam, M., Sawyer, S. & Fauquet, C. M. (1999). Possible emergence of new geminiviruses by frequent recombination. Virology 265, 218-225. (Pubitemid 30022217)
    • (1999) Virology , vol.265 , Issue.2 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 25
    • 17744395033 scopus 로고    scopus 로고
    • Datamonkey: Rapid detection of selective pressure on individual sites of codon alignments
    • DOI 10.1093/bioinformatics/bti320
    • Pond, S. L. & Frost, S. D. (2005). Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21, 2531-2533. (Pubitemid 40731616)
    • (2005) Bioinformatics , vol.21 , Issue.10 , pp. 2531-2533
    • Kosakovsky, P.S.L.1    Frost, S.D.W.2
  • 26
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada, D. & Crandall, K. A. (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817-818. (Pubitemid 28552116)
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 30
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • DOI 10.1093/bioinformatics/btg180
    • Ronquist, F. & Huelsenbeck, J. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574. (Pubitemid 37038874)
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 31
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Smith, J. M. (1992). Analyzing the mosaic structure of genes. J Mol Evol 34, 126-129.
    • (1992) J Mol Evol , vol.34 , pp. 126-129
    • Smith, J.M.1
  • 32
  • 34
    • 2442705213 scopus 로고    scopus 로고
    • Conserved RNA secondary structures in Flaviviridae genomes
    • DOI 10.1099/vir.0.19462-0
    • Thurner, C., Witwer, C., Hofacker, I. L. & Stadler, P. F. (2004). Conserved RNA secondary structures in Flaviviridae genomes. J Gen Virol 85, 1113-1124. (Pubitemid 38659775)
    • (2004) Journal of General Virology , vol.85 , Issue.5 , pp. 1113-1124
    • Thurner, C.1    Witwer, C.2    Hofacker, I.L.3    Stadler, P.F.4
  • 35
    • 33645539869 scopus 로고    scopus 로고
    • Genome analysis and phylogenetic relationships between east, central and west African isolates of Yellow fever virus
    • von Lindern, J. J., Aroner, S., Barrett, N. D., Wicker, J. A., Davis, C. T. & Barrett, A. D. (2006). Genome analysis and phylogenetic relationships between east, central and west African isolates of Yellow fever virus. J Gen Virol 87, 895-907.
    • (2006) J Gen Virol , vol.87 , pp. 895-907
    • Von Lindern, J.J.1    Aroner, S.2    Barrett, N.D.3    Wicker, J.A.4    Davis, C.T.5    Barrett, A.D.6
  • 36
    • 0033799517 scopus 로고    scopus 로고
    • Molecular characterization of the first Australian isolate of Japanese encephalitis virus, the FU strain
    • Williams, D. T., Wang, L. F., Daniels, P. W. & Mackenzie, J. S. (2000). Molecular characterization of the first Australian isolate of Japanese encephalitis virus, the FU strain. J Gen Virol 81, 2471-2480.
    • (2000) J Gen Virol , vol.81 , pp. 2471-2480
    • Williams, D.T.1    Wang, L.F.2    Daniels, P.W.3    Mackenzie, J.S.4
  • 37
    • 0026597059 scopus 로고
    • Codon usage in the G+C-rich Streptomyces genome
    • Wright, F. & Bibb, M. J. (1992). Codon usage in the G+C-rich Streptomyces genome. Gene 113, 55-65.
    • (1992) Gene , vol.113 , pp. 55-65
    • Wright, F.1    Bibb, M.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.