메뉴 건너뛰기




Volumn 26, Issue 24, 2010, Pages 3098-3104

State reduction for network intervention in probabilistic Boolean networks

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGICAL MODEL; GASTROINTESTINAL TUMOR; GENE REGULATORY NETWORK; GENETICS; HUMAN; PROBABILITY; STATISTICAL MODEL;

EID: 79951757406     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq575     Document Type: Article
Times cited : (28)

References (25)
  • 1
    • 33846424927 scopus 로고    scopus 로고
    • Control of Boolean networks: hardness results and algorithms for the tree structured nqtworks
    • Akutsu, T. et al. (2007) Control of Boolean networks: hardness results and algorithms for the tree structured nqtworks. J. Theor. Biol., 244, 670-677.
    • (2007) J. Theor. Biol. , vol.244 , pp. 670-677
    • Akutsu, T.1
  • 3
    • 24344481300 scopus 로고    scopus 로고
    • Steady-state probabilities for attractors in probabilistic Boolean networks
    • Brun, M. et al. (2005) Steady-state probabilities for attractors in probabilistic Boolean networks. Signal Process., 85, 1993-2013.
    • (2005) Signal Process. , vol.85 , pp. 1993-2013
    • Brun, M.1
  • 4
    • 34250810708 scopus 로고    scopus 로고
    • Intervention in probabilistic gene regulatory networks
    • Datta, A. et al. (2006) Intervention in probabilistic gene regulatory networks. Curr. Bioinform., 1, 167-184.
    • (2006) Curr. Bioinform. , vol.1 , pp. 167-184
    • Datta, A.1
  • 5
    • 0000790476 scopus 로고    scopus 로고
    • On the effects of using the grassman-taksar-heyman method in iterative aggregation-disaggregation
    • Dayar, T. and Stewart, W.J. (1996) On the effects of using the grassman-taksar-heyman method in iterative aggregation-disaggregation. SIAM J. Sci. Comput., 17, 287-303.
    • (1996) SIAM J. Sci. Comput. , vol.17 , pp. 287-303
    • Dayar, T.1    Stewart, W.J.2
  • 6
    • 0037400061 scopus 로고    scopus 로고
    • Mappings between probabilistic Boolean networks
    • Dougherty, E.R. and Shmulevich, I. (2003) Mappings between probabilistic Boolean networks. Signal Process., 83, 799-809.
    • (2003) Signal Process. , vol.83 , pp. 799-809
    • Dougherty, E.R.1    Shmulevich, I.2
  • 7
    • 0034302007 scopus 로고    scopus 로고
    • Coeffcient of determination in nonlinear signal processing
    • Dougherty, E.R. et al. (2000) Coeffcient of determination in nonlinear signal processing. Signal Process., 80, 2219-2235.
    • (2000) Signal Process. , vol.80 , pp. 2219-2235
    • Dougherty, E.R.1
  • 8
    • 77954197426 scopus 로고    scopus 로고
    • A CoD-based reduction algorithm for designing stationary control policies on Boolean networks
    • Ghaffari, N. et al. (2010) A CoD-based reduction algorithm for designing stationary control policies on Boolean networks. Bioinformatics, 26, 1556-1563.
    • (2010) Bioinformatics , vol.26 , pp. 1556-1563
    • Ghaffari, N.1
  • 9
    • 3042588848 scopus 로고    scopus 로고
    • A directed-graph algorithm to grow genetic regulatory subnetworks from seed genes based on strength of connection
    • Hashimoto, R. et al. (2004) A directed-graph algorithm to grow genetic regulatory subnetworks from seed genes based on strength of connection. Bioinformatics, 20, 1241-1247.
    • (2004) Bioinformatics , vol.20 , pp. 1241-1247
    • Hashimoto, R.1
  • 10
    • 27344445788 scopus 로고    scopus 로고
    • Stationary distributions and mean first passage times of perturbed Markov chains
    • Hunter, J.J. (2005) Stationary distributions and mean first passage times of perturbed Markov chains. Linear Algebra Appli., 410, 217-243.
    • (2005) Linear Algebra Appli , vol.410 , pp. 217-243
    • Hunter, J.J.1
  • 11
    • 1542303732 scopus 로고    scopus 로고
    • Reduction mappings between probabilistic Boolean networks
    • Ivanov, I. and Dougherty, E.R. (2004) Reduction mappings between probabilistic Boolean networks. EURASIP JASP, 1, 125-131.
    • (2004) EURASIP JASP , vol.1 , pp. 125-131
    • Ivanov, I.1    Dougherty, E.R.2
  • 12
    • 34247875949 scopus 로고    scopus 로고
    • Dynamics preserving size reduction mappings for probabilistic Boolean networks
    • Ivanov, I. et al. (2007) Dynamics preserving size reduction mappings for probabilistic Boolean networks. IEEE Trans. Signal Process., 55, 2310-2322.
    • (2007) IEEE Trans. Signal Process. , vol.55 , pp. 2310-2322
    • Ivanov, I.1
  • 14
    • 0014671878 scopus 로고
    • Homeostasis and differentiation in random genetic control networks
    • Kauffman, S.A. (1969) Homeostasis and differentiation in random genetic control networks. Nature, 224, 177-178.
    • (1969) Nature , vol.224 , pp. 177-178
    • Kauffman, S.A.1
  • 15
    • 1842687878 scopus 로고    scopus 로고
    • The yeast cell-cycle network is robustly designed
    • Li, F. et al. (2004) The yeast cell-cycle network is robustly designed. Proc. Natl Acad. Sci. USA, 101, 4781-4786.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 4781-4786
    • Li, F.1
  • 16
    • 34250836844 scopus 로고    scopus 로고
    • A control model for Markovian genetic regulatory networks
    • 4070/2006
    • Ng, M.K. et al. (2006) A control model for Markovian genetic regulatory networks. Trans. Comput. Syst. Biol., 4070/2006, 36-48.
    • (2006) Trans. Comput. Syst. Biol. , pp. 36-48
    • Ng, M.K.1
  • 17
    • 33744466566 scopus 로고    scopus 로고
    • Optimal infinite-horizon control for probabilistic Boolean networks
    • Pal, R. et al. (2006) Optimal infinite-horizon control for probabilistic Boolean networks. IEEE Trans. Signal Process., 54, 2375-2387.
    • (2006) IEEE Trans. Signal Process. , vol.54 , pp. 2375-2387
    • Pal, R.1
  • 18
    • 33847665105 scopus 로고    scopus 로고
    • Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas
    • Price, N.D. et al. (2007) Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas. Proc. Natl Acad. Sci. USA, 104, 3414-3419.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 3414-3419
    • Price, N.D.1
  • 19
    • 53149114883 scopus 로고    scopus 로고
    • Effect of function perturbation on the steady-state distribution of genetic regulatory networks: optimal structural intervention
    • Qian, X. and Dougherty, E.R. (2008) Effect of function perturbation on the steady-state distribution of genetic regulatory networks: optimal structural intervention. IEEE Trans. Signal Process., 56, 4966-4976.
    • (2008) IEEE Trans. Signal Process. , vol.56 , pp. 4966-4976
    • Qian, X.1    Dougherty, E.R.2
  • 20
    • 69149096214 scopus 로고    scopus 로고
    • Intervention in gene regulatory networks via greedy control policies based on long-run behavior
    • Qian, X. et al. (2009) Intervention in gene regulatory networks via greedy control policies based on long-run behavior. BMC Syst. Biol., 3, 16.
    • (2009) BMC Syst. Biol. , vol.3 , pp. 16
    • Qian, X.1
  • 21
    • 0001296683 scopus 로고
    • Perturbation theory and finite Markov chains
    • Schweitzer, P.J. (1968) Perturbation theory and finite Markov chains. J. Appl. Probab., 5, 401-413.
    • (1968) J. Appl. Probab. , vol.5 , pp. 401-413
    • Schweitzer, P.J.1
  • 23
    • 0035999984 scopus 로고    scopus 로고
    • Binary analysis and optimization-based normalization of gene expression data
    • Shmulevich, I. and Zhang, W. (2002) Binary analysis and optimization-based normalization of gene expression data. Bioinformatics, 18, 555-565.
    • (2002) Bioinformatics , vol.18 , pp. 555-565
    • Shmulevich, I.1    Zhang, W.2
  • 24
    • 0036184629 scopus 로고    scopus 로고
    • Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks
    • Shmulevich, I. et al. (2002) Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks. Bioinformatics, 18, 261-274.
    • (2002) Bioinformatics , vol.18 , pp. 261-274
    • Shmulevich, I.1
  • 25
    • 53549127821 scopus 로고    scopus 로고
    • Intervention in gene regulatory networks via a stationary mean- first-passage-time control policy
    • Vahedi, G. et al. (2008) Intervention in gene regulatory networks via a stationary mean- first-passage-time control policy. IEEE Trans. Biomed. Eng., 55, 2319-2331.
    • (2008) IEEE Trans. Biomed. Eng. , vol.55 , pp. 2319-2331
    • Vahedi, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.