Isolation of hyperthermal stress responsive genes in soft coral (Scleronephthya gracillimum)

Molecular and Cellular Toxicology

Volumn 6, Issue 4, 2010, Pages 387-393

  Woo, Seonock ^a   Jeon, Hye Young ^a   Lee, Jongrak ^b   Song, Jun Im ^c   Park, Hong Seog ^d   Yum, Seungshic ^a  

^a Korea Research Institute of Ships and Ocean Engineering   (South Korea)

^b IN THE SEA Korea Co Ltd   (South Korea)

^c Ewha Womans University   (South Korea)

^d Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

Differentially expressed genes; Hyperthermal stress; Real time quantitative PCR; Scleronephthya gracillimum; Soft coral

Indexed keywords

EID: 79951718663     PISSN: 1738642X     EISSN: 20928467     Source Type: Journal    
DOI: 10.1007/s13273-010-0051-0     Document Type: Article

References (30)

1. Costanza, R. et al. The value of the world's ecosystem services and natural capital. Nature 387:253-260 (1997).
2. Liang, P. & Pardee, A. B. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257:967-971 (1992).
3. Liang, P., Averboukh, L. & Pardee, A. B. Distribution and cloning of eukaryotic mRNAs by means of differential display: refinements and optimization. Nucleic Acids Res 21:3269-3275 (1993).
4. Liang, P. et al. Differential display using one-base anchored oligo-dT primers. Nucleic Acids Res 22:5763-5764 (1994).
5. Hwang, I. T. et al. Annealing control primer system for improving specificity of PCR amplification. Biotechniques 35:1180-1184 (2003).
6. Kim, Y. J. et al. Annealing control primer system for identification of differentially expressed genes on agarose gels. Biotechniques 36:424-426, 428, 430 passim (2004).
7. Duchen, M. R. Mitochondria and calcium: from cell signalling to cell death. J Physiol 529 Pt 1:57-68 (2000).
8. Pan, J. S. et al. Oxidative stress disturbs energy metabolism of mitochondria in ethanol-induced gastric mucosa injury. World J Gastroenterol 14:5857-5867 (2008).
9. Chin, D. & Means, A. R. Calmodulin: a prototypical calcium sensor. Trends Cell Biol 10:322-328 (2000).
10. Hoeflich, K. P. & Ikura, M. Calmodulin in action: diversity in target recognition and activation mechanisms. Cell 108:739-742 (2002).
11. Moreto, J. et al. Differential involvement of H- and K-Ras in Raf-1 activation determines the role of calmodulin in MAPK signaling. Cell Signal 21:1827-1836 (2009).
12. 2+-binding chaperone of the endoplasmic reticulum. Int J Biochem Cell Biol 37:260-266 (2005).
13. Jia, L. et al. Novel anti-oxidative role of calreticulin in protecting A549 human type II alveolar epithelial cells against hypoxic injury. Am J Physiol Cell Physiol 294:C47-55 (2008).
14. Alur, M. et al. Suppressive roles of calreticulin in prostate cancer growth and metastasis. Am J Pathol 175:882-890 (2009).
15. Carafoli, E. Historical review: mitochondria and calcium: ups and downs of an unusual relationship. Trends Biochem Sci 28:175-181 (2003).
16. del Arco, A. & Satrustegui, J. Molecular cloning of Aralar, a new member of the mitochondrial carrier superfamily that binds calcium and is present in human muscle and brain. J Biol Chem 273:23327-23334 (1998).
17. Okuda, T. et al. PQBP-1 transgenic mice show a late-onset motor neuron disease-like phenotype. Hum Mol Genet 12:711-725 (2003).
18. Arosio, P. & Levi, S. Ferritin, iron homeostasis, and oxidative damage. Free Radic Biol Med 33:457-463 (2002).
19. Torti, S. V. et al. The molecular cloning and characterization of murine ferritin heavy chain, a tumor necrosis factor-inducible gene. J Biol Chem 263:12638-12644 (1988).
20. Torti, F. M. & Torti, S. V. Regulation of ferritin genes and protein. Blood 99:3505-3516 (2002).
21. Barbeito, A. G. et al. Abnormal iron metabolism and oxidative stress in mice expressing a mutant form of the ferritin light polypeptide gene. J Neurochem 109:1067-1078 (2009).
22. Turner, M. W. The role of mannose-binding lectin in health and disease. Mol Immunol 40:423-429 (2003).
23. Arnold, J. & Grune, T. PARP-mediated proteasome activation: a co-ordination of DNA repair and protein degradation? Bioessays 24:1060-1065 (2002).
24. Simbulan-Rosenthal, C. M. et al. Transient poly(ADP-ribosyl) ation of nuclear proteins and role of poly(ADP-ribose) polymerase in the early stages of apoptosis. J Biol Chem 273:13703-13712 (1998).
25. Finlin, B. S. et al. RERG is a novel ras-related, estrogen-regulated and growth-inhibitory gene in breast cancer. J Biol Chem 276:42259-42267 (2001).
26. Key, M. D., Andres, D. A., Der, C. J. & Repasky, G. A. Characterization of RERG: an estrogen-regulated tumor suppressor gene. Methods Enzymol 407:513-527 (2006).
27. Blobel, C. P. Metalloprotease-disintegrins: links to cell adhesion and cleavage of TNF alpha and Notch. Cell 90:589-592 (1997).
28. Primakoff, P. & Myles, D. G. The ADAM gene family: surface proteins with adhesion and protease activity. Trends Genet 16:83-87 (2000).
29. Woo, S. et al. Efficient isolation of intact RNA from the soft coral Scleronephthya gracillimum (Kükenthal) for gene expression analyses. Integr Biosci 9:205-209 (2005).
30. Woo, S. et al. Effects of heavy metals on antioxidants and stress-responsive gene expression in Javanese medaka (Oryzias javanicus). Comp Biochem Physiol C Toxicol Pharmacol 149:289-299 (2009).