Identification of Gram-positive anaerobic cocci by MALDI-TOF mass spectrometry

Systematic and Applied Microbiology

Volumn 34, Issue 1, 2011, Pages 58-62

  Veloo, A C M ^a   Erhard, M ^b   Welker, M ^b   Welling, G W ^a   Degener, J E ^a  

^a UNIVERSITY MEDICAL CENTER GRONINGEN   (Netherlands)

^b AnagnosTec Gesellschaft fur Analytische Biochemie & Diagnostik mbH   (Germany)

Author keywords

Gram positive anaerobic cocci; Identification; MALDI TOF MS

Indexed keywords

BACTERIAL RNA; RNA 16S;

ANAEROCOCCUS VAGINALIS; ARTICLE; BACTERIAL GENE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CONTROLLED STUDY; DATA BASE; FINEGOLDIA MAGNA; FLUORESCENCE IN SITU HYBRIDIZATION; GENE SEQUENCE; GRAM POSITIVE ANAEROBIC COCCI; GRAM POSITIVE COCCI; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; NUCLEOTIDE SEQUENCE; PEPTONIPHILUS IVORII; PHYLOGENETIC TREE; PRIORITY JOURNAL; VALIDATION PROCESS;

ANIMALS; BACTERIA, ANAEROBIC; BACTERIOLOGICAL TECHNIQUES; DNA, BACTERIAL; DNA, RIBOSOMAL; GRAM-POSITIVE COCCI; HUMANS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

ANAEROCOCCUS VAGINALIS; FINEGOLDIA MAGNA; POSIBACTERIA;

EID: 79951674381     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2010.11.005     Document Type: Article

References (22)

1. Arnold R.J., Reilly J.P. Observation of Escherichia coli ribosomal proteins and their posttranslational modifications by mass spectometry. Anal. Biochem. 1999, 269:105-112.
2. Boom R., Sol C.J., Salimans M.M., Jansen C.L., Wertheim-van Dillen P.M., van der Noordaa J. Rapid and simple method for purification of nucleic acids. J. Clin. Microbiol. 1990, 28:495-503.
3. Downes J., Wade W.G. Peptostreptococcus stomatis sp. nov., isolated from the human oral cavity. Int. J. Syst. Evol. Microbiol. 2006, 56:751-754.
4. Ezaki T., Kawamura Y., Li N., Li Z.Y., Zhao L., Shu S. Proposal of the genera Anaerococcus gen. nov., Peptoniphilus gen. nov. and Gallicola gen. nov. for members of the genus Peptostreptococcus. Int. J. Syst. Evol. Microbiol. 2001, 51:1521-1528.
5. Grosse-Herrenthey A., Maier T., Gessler F., Schaumann R., Böhnel H., Kostrzewa M., Krüger M. Challenging the problem of clostridial identification with matrix-assisted laser desorption and ionization-time-of-flight mass spectrometry (MALDI-TOF MS). Anaerobe 2008, 14:242-249.
6. Hiraishi A. Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification. Lett. Appl. Microbiol. 1992, 15:210-213.
7. Jousimies-Somer H.R., Summanen P., Citron D.M., Baron E.J., Wexler H.M., Finegold S.M. Anaerobic Bacteriology Manual 2002, Star Publishing Company, Belmont, CA. 6th edn.
8. Kallow W., Erhard M., Shah H.N., Raptakis E., Welker M. MALDI-TOF MS and microbial identification: years of experimental development to an established protocol. S. Mass spectrometry for microbial proteomics 2010, 255-276. Wiley, Chichester. H.N. Shah, S.E. Gharbia, V. Encheva (Eds.).
9. Keys C.J., Dare D.J., Sutton H., Wells G., Lunt M., McKenna T., McDowall M., Shah H.N. Compilation of a MALDI-TOF mass spectral database for the rapid screening and characterisation of bacteria implicated in human infectious diseases. Infect. Genet. Evol. 2004, 4:221-242.
10. Ludwig W., Strunk O., Klugbauer S., Klugbauer N., Weizenegger M., Neumaier J., Bachleitner M., Schleifer K.H. Bacterial phylogeny based on comparative sequence analysis. Electrophoresis 1998, 19:554-568.
11. Maidak B.L., Cole J.R., Parker C.T., Garrity G.M., Larsen N., Li B., Lilburn T.G., McCaughey M.J., Olsen G.J., Overbeek R., Pramanik S., Schmidt T.M., Tiedje J.M., Woese C.R. A new version of the RDP (Ribosomal Database Project). Nucleic Acids Res. 1999, 27:171-173.
12. Murdoch D.A., Collins M.D., Willems A., Hardie J.M., Young K.A., Magee J.T. Description of three new species of the genus Peptostreptococcus from human clinical specimens: Peptostreptococcus harei sp. nov., Peptostreptococcus ivorii sp. nov. and Peptostreptococcus octavius sp. nov. Int. J. Syst. Bacteriol. 1997, 47:781-787.
13. Murdoch D.A., Mitchelmore I.J., Tabaqchali S. The clinical importance of gram positive anaerobic cocci isolated at St. Bartholomew's hospital, London, in 1987. J. Med. Microbiol. 1994, 41:36-43.
14. Murdoch D.A., Shah H.N. Reclassification of Peptostreptococcus magnus (Prevot 1933) Holdeman and Moore 1972 as Finegoldia magna comb. nov. and Peptostreptococcus micros (Prevot 1933) Smith 1957 as Micromonas micros comb. nov. Anaerobe 1999, 5:555-559.
15. Nagy E., Urban E., Terhes G., Kostrzewa M. Species identification of clinical isolates of Bacteroides by matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry. Clin. Microbiol. Infect. 2009, 15:796-802.
16. Seng P., Drancourt M., Gouriet F., La Scola B., Fournier P.-E., Rolain J.M., Raoult D. Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectometry. Clin. Infect. Dis. 2009, 49:543-551.
17. Song Y., Liu C., Finegold S.M. Peptoniphilus gorbachii sp. nov., Peptoniphilus olsenii sp. nov., and Anaerococcus murdochii sp. nov. isolated from clinical specimens of human origin. J. Clin. Microbiol. 2007, 45:1746-1752.
18. Song Y., Liu C., McTeague M., Vu A., Liu J.Y., Finegold S.M. Rapid identification of gram-positive anaerobic coccal species originally classified in the genus Peptostreptococcus by multiplex PCR assays using genus- and species-specific primers. Microbiology 2003, 149:1719-1727.
19. Stackebrandt E., Päuker O., Erhard M. Grouping myxococci (Corallococcus) strains by matrix-assisted laser desorption time-of-flight (MALDI TOF) mass spectrometry: comparison with gene sequence phylogenies. Curr. Microbiol. 2005, 50:71-77.
20. Stîngu C.S., Rodloff A.C., Jentsch H., Schaumann R., Eschrich K. Rapid identification of oral anaerobic bacteria cultivated from subgingival biofilm by MALDI-TOF-MS. Oral. Microbiol. Immunol. 2008, 23:372-376.
21. Tindall B.J., Euzéby J.P. Proposal of Parvimonos gen. nov. and Quatrionicoccus gen. nov. as replacements for the illegitimate, prokaryotic, generic names Micromonas Murdoch and Shah 2000 and Quadricoccus Maszenan et al. 2002, respectively. Int. J. Syst. Evol. Microbiol. 2006, 56:2711-2713.
22. Wildeboer-Veloo A.C.M., Harmsen H.J.M., Welling G.W., Degener J.E. Development of 16S rRNA-based probes for the identification of Gram-positive anaerobic cocci isolated from human clinical specimens. Clin. Microbiol. Infect. 2007, 3:985-992.