Differentiation of species of the Streptococcus bovis/equinus-complex by MALDI-TOF Mass Spectrometry in comparison to sodA sequence analyses

Systematic and Applied Microbiology

Volumn 34, Issue 1, 2011, Pages 52-57

  Hinse, D ^a   Vollmer, T ^a   Erhard, M ^b   Welker, M ^b   Moore, E R B ^c   Kleesiek, K ^a   Dreier, J ^a  

^a RUHR UNIVERSITY BOCHUM   (Germany)

^b AnagnosTec Gesellschaft für Analytische Biochemie und Diagnostik mbH   (Germany)

^c SAHLGRENSKA UNIVERSITY HOSPITAL   (Sweden)

Author keywords

MALDI TOF MS; Mass spectrometry; Microbial taxonomy; SodA sequence analysis; Streptococcus bovis equinus complex

Indexed keywords

MANGANESE; SUPEROXIDE DISMUTASE;

ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CONTROLLED STUDY; DIAGNOSTIC ACCURACY; DNA SEQUENCE; INTERMETHOD COMPARISON; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; RELIABILITY; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; STREPTOCOCCUS BOVIS; STREPTOCOCCUS EQUINUS; SUBSPECIES; TAXONOMIC IDENTIFICATION;

BACTERIAL PROTEINS; BACTERIOLOGICAL TECHNIQUES; CLUSTER ANALYSIS; DNA, BACTERIAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; STREPTOCOCCUS BOVIS; STREPTOCOCCUS EQUI; SUPEROXIDE DISMUTASE;

STREPTOCOCCUS; STREPTOCOCCUS SP. 'GROUP D';

EID: 79951672731     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2010.11.010     Document Type: Article

References (29)

1. Abdulamir A.S., Hafidh R.R., Mahdi L.K., Al-Jeboori T., Abubaker F. Investigation into the controversial association of Streptococcus gallolyticus with colorectal cancer and adenoma. BMC Cancer 2009, 9:403.
2. Clermont O., Dhanji H., Upton M., Gibreel T., Fox A., Boyd D., Mulvey M.R., Nordmann P., Ruppe E., Sarthou J.L., Frank T., Vimont S., Arlet G., Branger C., Woodford N., Denamur E. Rapid detection of the O25b-ST131 clone of Escherichia coli encompassing the CTX-M-15-producing strains. J. Antimicrob. Chemother. 2009, 64:274-277.
3. Coykendall A.L., Gustafson K.B. Deoxyribonucleic acid hybridizations among strains of Streptococcus salivarius and Streptococcus bovis. Int. J. Syst. Bacteriol. 1985, 35:274-280.
4. Dieckmann R., Helmuth R., Erhard M., Malorny B. Rapid classification and identification of salmonellae at the species and subspecies levels by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry. Appl. Environ. Microbiol. 2008, 74:7767-7778.
5. Farrow J.A.E., Kruze J., Phillips B.A., Bramley A.J., Collins M.D. Taxonomic studies on Streptococcus bovis and Streptococcus equinus: description of Streptococcus alactolyticus sp. nov. and Streptococcus saccharolyticus sp. nov. Syst. Appl. Microbiol. 1984, 5:467-482.
6. Fox G.E., Wisotzkey J.D., Jurtshuk P. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 1992, 42:166-170.
7. Glazunova O.O., Raoult D., Roux V. Partial sequence comparison of the rpoB, sodA, groEL and gyrB genes within the genus Streptococcus. Int. J. Syst. Evol. Microbiol. 2009, 59:2317-2322.
8. Glazunova O.O., Raoult D., Roux V. Partial recN gene sequencing: a new tool for identification and phylogeny within the genus Streptococcus. Int. J. Syst. Evol. Microbiol. 2010, 60:2140-2148.
9. Gold J.S., Bayar S., Salem R.R. Association of Streptococcus bovis bacteremia with colonic neoplasia and extracolonic malignancy. Arch. Surg. 2004, 139:760-765.
10. Herrera P., Kwon Y.M., Ricke S.C. Ecology and pathogenicity of gastrointestinal Streptococcus bovis. Anaerobe 2009, 15:44-54.
11. Kallow W., Erhard M., Shah H.N., Raptakis E., Welker M. MALDI-TOF MS for microbial identification: years of experimental development to an established protocol. Mass spectrometry for microbial proteomics 2010, 255-276. John Wiley & Sons, Ltd, Chichester. H.N. Shah, S.E. Gharbia (Eds.).
12. Kumar S., Tamura K., Jakobsen I.B., Nei M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 2001, 17:1244-1245.
13. Lartigue M.F., Hery-Arnaud G., Haguenoer E., Domelier A.S., Schmit P.O., Van Der Mee-Marquet N., Lanotte P., Mereghetti L., Kostrzewa M., Quentin R. Identification of Streptococcus agalactiae isolates from various phylogenetic lineages by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J. Clin. Microbiol. 2009, 47:2284-2287.
14. Naber C.K., Bauhofer A., Block M., Buerke M., Erbel R., Graninger W., Herrmann M., Horstkotte D., Kern P., Lode H., Mehlhorn U., Meyer J., Mügge A., Niebel J., Peters G., Saha P.M., Werdan K. S2 Leitlinie zur Diagnostik und Therapie der infektiösen Endokarditis. Z. Kardiol. 2004, 93:1005-1021.
15. Nagy E., Maier T., Urban E., Terhes G., Kostrzewa M. Species identification of clinical isolates of Bacteroides by matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry. Clin. Microbiol. Infect. 2009, 15:796-802.
16. Osawa R., Fujisawa T., Sly L.I. Streptococcus gallolyticus sp. nov.; gallate degrading organisms formerly assigned to Streptococcus bovis. Syst. Appl. Microbiol. 1995, 18:74-78.
17. Poyart C., Quesne G., Coulon S., Berche P., Trieu-Cuot P. Identification of streptococci to species level by sequencing the gene encoding the manganese-dependent superoxide dismutase. J. Clin. Microbiol. 1998, 36:41-47.
18. Poyart C., Quesne G., Trieu-Cuot P. Taxonomic dissection of the Streptococcus bovis group by analysis of manganese-dependent superoxide dismutase gene (sodA) sequences: reclassification of 'Streptococcus infantarius subsp. coli' as Streptococcus lutetiensis sp. nov. and of Streptococcus bovis biotype 11.2 as Streptococcus pasteurianus sp. nov. Int. J. Syst. Evol. Microbiol. 2002, 52:1247-1255.
19. Pukall R., Schumann P., Clermont D., Bizet C. Bacillus aeolius DSM 15084T (=CIP 107628T) is a strain of Bacillus licheniformis. Int. J. Syst. Evol. Microbiol. 2008, 58:1268-1270.
20. Risch M., Radjenovic D., Han J.N., Wydler M., Nydegger U., Risch L. Comparison of MALDI TOF with conventional identification of clinically relevant bacteria. Swiss Med. Wkly. 2010, 140:w13095.
21. Sauer S., Kliem M. Mass spectrometry tools for the classification and identification of bacteria. Nat. Rev. Microbiol. 2010, 8:74-82.
22. Schlegel L., Grimont F., Collins M.D., Regnault B., Grimont P.A., Bouvet A. Streptococcus infantarius sp. nov., Streptococcus infantarius subsp. infantarius subsp. nov. and Streptococcus infantarius subsp. coli subsp. nov., isolated from humans and food. Int. J. Syst. Evol. Microbiol. 2000, 50(Pt 4):1425-1434.
23. Schlegel L., Grimont F., Ageron E., Grimont P.A., Bouvet A. Reappraisal of the taxonomy of the Streptococcus bovis/Streptococcus equinus complex and related species: description of Streptococcus gallolyticus subsp. gallolyticus subsp. nov., S. gallolyticus subsp. macedonicus subsp. nov. and S. gallolyticus subsp. pasteurianus subsp. nov. Int. J. Syst. Evol. Microbiol. 2003, 53:631-645.
24. Seng P., Drancourt M., Gouriet F., La Scola B., Fournier P.E., Rolain J.M., Raoult D. Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin. Infect. Dis. 2009, 49:543-551.
25. Sillanpää J., Nallapareddy S.R., Singh K.V., Ferraro M.J., Murray B.E. Adherence characteristics of endocarditis-derived Streptococcus gallolyticus ssp. gallolyticus (Streptococcus bovis biotype I) isolates to host extracellular matrix proteins. FEMS Microbiol. Lett. 2008, 289:104-109.
26. Sneath P.H., Sokal R.R. Numerical taxonomy. Nature 1962, 193:855-860.
27. Tamura K., Nei M., Kumar S. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc. Natl. Acad. Sci. U.S.A. 2004, 101:11030-11035.
28. Ueda K., Seki T., Kudo T., Yoshida T., Kataoka M. Two distinct mechanisms cause heterogeneity of 16S rRNA. J. Bacteriol. 1999, 181:78-82.
29. Vollmer T., Hinse D., Kleesiek K., Dreier J. Interactions between endocarditis-derived Streptococcus gallolyticus subsp. gallolyticus isolates and human endothelial cells. BMC Microbiol. 2010, 10:78.