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Volumn 30, Issue 8, 2010, Pages 1152-1160

Genotype diversity of hepatitis C virus (HCV) in HCV-associated liver disease patients in Indonesia

Author keywords

Core region; Genotype; Hepatitis C virus; Indonesia; Liver disease

Indexed keywords

ALPHA FETOPROTEIN;

EID: 79951657218     PISSN: 14783223     EISSN: 14783231     Source Type: Journal    
DOI: 10.1111/j.1478-3231.2010.02280.x     Document Type: Article
Times cited : (34)

References (39)
  • 1
    • 25844523297 scopus 로고    scopus 로고
    • Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes
    • Simmonds P, Bukh J, Combet C, et al. Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes. Hepatology 2005; 42: 962-73.
    • (2005) Hepatology , vol.42 , pp. 962-973
    • Simmonds, P.1    Bukh, J.2    Combet, C.3
  • 2
    • 0028218513 scopus 로고
    • Identification of genotypes of hepatitis C virus by sequence comparisons in the core, E1 and NS-5 regions
    • Simmonds P, Smith DB, McOmish F, et al. Identification of genotypes of hepatitis C virus by sequence comparisons in the core, E1 and NS-5 regions. J Gen Virol 1994; 75: 1053-61.
    • (1994) J Gen Virol , vol.75 , pp. 1053-1061
    • Simmonds, P.1    Smith, D.B.2    McOmish, F.3
  • 3
    • 61349087361 scopus 로고    scopus 로고
    • Hepatitis C virus genotype in blood donors and associated liver disease in Indonesia
    • Utama A, Budiarto BR, Monasari D, et al. Hepatitis C virus genotype in blood donors and associated liver disease in Indonesia. Intervirology 2008; 51: 410-6.
    • (2008) Intervirology , vol.51 , pp. 410-416
    • Utama, A.1    Budiarto, B.R.2    Monasari, D.3
  • 4
    • 0028097241 scopus 로고
    • Subtype analysis of hepatitis C virus in Indonesia on the basis of NS5B region sequences
    • Hotta H, Handajani R, Lusida MI, et al. Subtype analysis of hepatitis C virus in Indonesia on the basis of NS5B region sequences. J Clin Microbiol 1994; 32: 3049-51.
    • (1994) J Clin Microbiol , vol.32 , pp. 3049-3051
    • Hotta, H.1    Handajani, R.2    Lusida, M.I.3
  • 5
    • 0030001556 scopus 로고    scopus 로고
    • Differential prevalence of hepatitis C virus subtypes in healthy blood donors, patients on maintenance hemodialysis, and patients with hepatocellular carcinoma in Surabaya, Indonesia
    • Soetjipto, Handajani R, Lusida MI, et al. Differential prevalence of hepatitis C virus subtypes in healthy blood donors, patients on maintenance hemodialysis, and patients with hepatocellular carcinoma in Surabaya, Indonesia. J Clin Microbiol 1996; 34: 2875-80.
    • (1996) J Clin Microbiol , vol.34 , pp. 2875-2880
    • Soetjipto1    Handajani, R.2    Lusida, M.I.3
  • 6
    • 0034071646 scopus 로고    scopus 로고
    • Genotypic analysis of hepatitis C virus in blood donors in Indonesia
    • Inoue Y, Sulaiman HA, Matsubayashi K, et al. Genotypic analysis of hepatitis C virus in blood donors in Indonesia. Am J Trop Med Hyg 2000; 62: 92-8.
    • (2000) Am J Trop Med Hyg , vol.62 , pp. 92-98
    • Inoue, Y.1    Sulaiman, H.A.2    Matsubayashi, K.3
  • 7
    • 0035934568 scopus 로고    scopus 로고
    • Peginterferon alfa-2b plus ribavirin compared with interferon alfa-2b plus ribavirin for initial treatment of chronic hepatitis C: a randomized trial
    • Manns MP, McHutchison JG, Gordon SC, et al. Peginterferon alfa-2b plus ribavirin compared with interferon alfa-2b plus ribavirin for initial treatment of chronic hepatitis C: a randomized trial. Lancet 2001; 358: 958-65.
    • (2001) Lancet , vol.358 , pp. 958-965
    • Manns, M.P.1    McHutchison, J.G.2    Gordon, S.C.3
  • 8
    • 0037179698 scopus 로고    scopus 로고
    • Peginterferon alfa-2a plus ribavirin for chronic hepatitis C virus infection
    • Fried MW, Shiffman ML, Reddy KR, et al. Peginterferon alfa-2a plus ribavirin for chronic hepatitis C virus infection. N Engl J Med 2002; 347: 975-82.
    • (2002) N Engl J Med , vol.347 , pp. 975-982
    • Fried, M.W.1    Shiffman, M.L.2    Reddy, K.R.3
  • 9
    • 0344643420 scopus 로고    scopus 로고
    • The rate of fibrosis progression is an independent predictor of the response to antiviral therapy in chronic hepatitis C
    • Myers RP, Patel K, Pianko S, et al. The rate of fibrosis progression is an independent predictor of the response to antiviral therapy in chronic hepatitis C. J Viral Hepat 2003; 10: 16-22.
    • (2003) J Viral Hepat , vol.10 , pp. 16-22
    • Myers, R.P.1    Patel, K.2    Pianko, S.3
  • 10
    • 1542378867 scopus 로고    scopus 로고
    • Peginterferonalpha2a and ribavirin combination therapy in chronic hepatitis C: a randomized study of treatment duration and ribavirin dose
    • Hadziyannis SJ, Sette H Jr, Morgan TR, et al. Peginterferonalpha2a and ribavirin combination therapy in chronic hepatitis C: a randomized study of treatment duration and ribavirin dose. Ann Intern Med 2004; 140: 346-55.
    • (2004) Ann Intern Med , vol.140 , pp. 346-355
    • Hadziyannis, S.J.1    Sette Jr., H.2    Morgan, T.R.3
  • 11
    • 2542590982 scopus 로고    scopus 로고
    • Peginterferon alfa-2a (40 kd) and ribavirin for black American patients with chronic HCV genotype 1
    • Jeffers LJ, Cassidy W, Howell CD, et al. Peginterferon alfa-2a (40 kd) and ribavirin for black American patients with chronic HCV genotype 1. Hepatology 2004; 39: 1702-8.
    • (2004) Hepatology , vol.39 , pp. 1702-1708
    • Jeffers, L.J.1    Cassidy, W.2    Howell, C.D.3
  • 12
    • 22344457187 scopus 로고    scopus 로고
    • Association of amino acid substitution pattern in core protein of hepatitis C virus genotype 1b high viral load and non-virological response to interferon-ribavirin combination therapy
    • Akuta N, Suzuki F, Sezaki H, et al. Association of amino acid substitution pattern in core protein of hepatitis C virus genotype 1b high viral load and non-virological response to interferon-ribavirin combination therapy. Intervirology 2005; 48: 372-80.
    • (2005) Intervirology , vol.48 , pp. 372-380
    • Akuta, N.1    Suzuki, F.2    Sezaki, H.3
  • 13
    • 28944436403 scopus 로고    scopus 로고
    • Predictive factors of virological nonresponse to interferon-ribavirin combination therapy for patients infected with hepatitis C virus of genotype 1b and high viral load
    • Akuta N, Suzuki F, Sezaki H, et al. Predictive factors of virological nonresponse to interferon-ribavirin combination therapy for patients infected with hepatitis C virus of genotype 1b and high viral load. JMed Virol 2006; 78: 83-90.
    • (2006) JMed Virol , vol.78 , pp. 83-90
    • Akuta, N.1    Suzuki, F.2    Sezaki, H.3
  • 14
    • 35549000195 scopus 로고    scopus 로고
    • Prediction of response to pegylated interferon and ribavirin in hepatitis C by polymorphisms in the viral core protein and very early dynamics of viremia
    • Akuta N, Suzuki F, Kawamura Y, et al. Prediction of response to pegylated interferon and ribavirin in hepatitis C by polymorphisms in the viral core protein and very early dynamics of viremia. Intervirology 2007; 50: 361-8.
    • (2007) Intervirology , vol.50 , pp. 361-368
    • Akuta, N.1    Suzuki, F.2    Kawamura, Y.3
  • 15
    • 33846593397 scopus 로고    scopus 로고
    • Predictive factors of early and sustained responses to peginterferon plus ribavirin combination therapy in Japanese patients infected with hepatitis C virus genotype 1b: amino acid substitutions in the core region and low-density lipoprotein cholesterol levels
    • Akuta N, Suzuki F, Kawamura Y, et al. Predictive factors of early and sustained responses to peginterferon plus ribavirin combination therapy in Japanese patients infected with hepatitis C virus genotype 1b: amino acid substitutions in the core region and low-density lipoprotein cholesterol levels. J Hepatol 2007; 46: 403-10.
    • (2007) J Hepatol , vol.46 , pp. 403-410
    • Akuta, N.1    Suzuki, F.2    Kawamura, Y.3
  • 16
    • 34748866821 scopus 로고    scopus 로고
    • Predictors of viral kinetics to peginterferon plus ribavirin combination therapy in Japanese patients infected with hepatitis C virus genotype 1b
    • Akuta N, Suzuki F, Kawamura Y, et al. Predictors of viral kinetics to peginterferon plus ribavirin combination therapy in Japanese patients infected with hepatitis C virus genotype 1b. J Med Virol 2007; 79: 1686-95.
    • (2007) J Med Virol , vol.79 , pp. 1686-1695
    • Akuta, N.1    Suzuki, F.2    Kawamura, Y.3
  • 17
    • 62849110379 scopus 로고    scopus 로고
    • Randomized trial of high-dose Interferon-a-2b combined with Ribavirin in patients with chronic hepatitis C: correlation between amino acid substitutions in the Core/NS5A region and virological response to interferon therapy
    • Mori N, Imamura M, Kawakami Y, et al. Randomized trial of high-dose Interferon-a-2b combined with Ribavirin in patients with chronic hepatitis C: correlation between amino acid substitutions in the Core/NS5A region and virological response to interferon therapy. J Med Virol 2009; 81: 640-9.
    • (2009) J Med Virol , vol.81 , pp. 640-649
    • Mori, N.1    Imamura, M.2    Kawakami, Y.3
  • 18
    • 34748887873 scopus 로고    scopus 로고
    • Amino acid substitutions in the hepatitis C virus core region are the important predictor of hepatocarcinogenesis
    • Akuta N, Suzuki F, Kawamura Y, et al. Amino acid substitutions in the hepatitis C virus core region are the important predictor of hepatocarcinogenesis. Hepatology 2007; 46: 1357-64.
    • (2007) Hepatology , vol.46 , pp. 1357-1364
    • Akuta, N.1    Suzuki, F.2    Kawamura, Y.3
  • 19
    • 66449096358 scopus 로고    scopus 로고
    • Amino acid substitutions in the hepatitis C virus core region of genotype 1b are the important predictor of severe insulin resistance in patients without cirrhosis and diabetes mellitus
    • Akuta N, Suzuki F, HirakawaM, et al. Amino acid substitutions in the hepatitis C virus core region of genotype 1b are the important predictor of severe insulin resistance in patients without cirrhosis and diabetes mellitus. J MedVirol 2009; 81: 1032-9.
    • (2009) J MedVirol , vol.81 , pp. 1032-1039
    • Akuta, N.1    Suzuki, F.2    Hirakawa, M.3
  • 20
    • 77950605678 scopus 로고    scopus 로고
    • Impact of amino acid substitutions in the hepatitis C virus genotype 1b core region in liver steatosis and hepatic oxidative stress in patients with chronic hepatitis C
    • Tachi Y, Katano Y, Honda T, et al. Impact of amino acid substitutions in the hepatitis C virus genotype 1b core region in liver steatosis and hepatic oxidative stress in patients with chronic hepatitis C. Liver Int 2010; 30: 554-9.
    • (2010) Liver Int , vol.30 , pp. 554-559
    • Tachi, Y.1    Katano, Y.2    Honda, T.3
  • 21
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4: 406-25.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 22
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences.J Mol Evol 1980; 16: 111-20.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 23
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, et al. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.. Mol Biol Evol 2007; 24: 1596-9.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3
  • 24
    • 33846209513 scopus 로고    scopus 로고
    • Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: the 50 untranslated region (UTR) fails to classify subtypes
    • Hraber PT, Fischer W, Bruno WJ, et al. Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: the 50 untranslated region (UTR) fails to classify subtypes. Virol J 2006; 3: 103.
    • (2006) Virol J , vol.3 , pp. 103
    • Hraber, P.T.1    Fischer, W.2    Bruno, W.J.3
  • 25
    • 33745136792 scopus 로고    scopus 로고
    • Analysis of the 50 noncoding region versus the NS5b region in genotyping hepatitis C virus isolates from blood donors in France
    • Cantaloube JF, Laperche S, Gallian P, et al. Analysis of the 50 noncoding region versus the NS5b region in genotyping hepatitis C virus isolates from blood donors in France. J Clin Microbiol 2006; 44: 2051-6.
    • (2006) J Clin Microbiol , vol.44 , pp. 2051-2056
    • Cantaloube, J.F.1    Laperche, S.2    Gallian, P.3
  • 26
    • 9044233638 scopus 로고    scopus 로고
    • Survey of type 6 group variants of hepatitis C virus in Southeast Asia by using a core-based genotyping assay
    • Mellor J, Walsh EA, Prescott LE, et al. Survey of type 6 group variants of hepatitis C virus in Southeast Asia by using a core-based genotyping assay. J Clin Microbiol 1996; 34: 417-23.
    • (1996) J Clin Microbiol , vol.34 , pp. 417-423
    • Mellor, J.1    Walsh, E.A.2    Prescott, L.E.3
  • 27
    • 0031059949 scopus 로고    scopus 로고
    • New hepatitis C virus (HCV) genotyping system that allows for identification of HCV genotypes 1a, 1b, 2a, 2b, 3a, 3b, 4, 5a, and 6a
    • Ohno O, Mizokami M, Wu RR, et al. New hepatitis C virus (HCV) genotyping system that allows for identification of HCV genotypes 1a, 1b, 2a, 2b, 3a, 3b, 4, 5a, and 6a. J Clin Microbiol 1997; 35: 201-7.
    • (1997) J Clin Microbiol , vol.35 , pp. 201-207
    • Ohno, O.1    Mizokami, M.2    Wu, R.R.3
  • 28
    • 0242677585 scopus 로고    scopus 로고
    • Comparison of hepatitis C virus genotyping by 5' noncoding region- and core-based reverse transcriptase PCR assay with sequencing and use of the assay for determining subtype distribution in India
    • Lole KS, Jha JA, Shrotri SP, et al. Comparison of hepatitis C virus genotyping by 5' noncoding region- and core-based reverse transcriptase PCR assay with sequencing and use of the assay for determining subtype distribution in India. J Clin Microbiol 2003; 41: 5240-4.
    • (2003) J Clin Microbiol , vol.41 , pp. 5240-5244
    • Lole, K.S.1    Jha, J.A.2    Shrotri, S.P.3
  • 29
    • 0242684422 scopus 로고    scopus 로고
    • Comparative study of different methods to genotype hepatitis C virus type 6 variants
    • Chinchai T, Labout J, Noppornpanth S, et al. Comparative study of different methods to genotype hepatitis C virus type 6 variants. J Virol Methods 2003; 109: 195-201.
    • (2003) J Virol Methods , vol.109 , pp. 195-201
    • Chinchai, T.1    Labout, J.2    Noppornpanth, S.3
  • 30
    • 34547130793 scopus 로고    scopus 로고
    • Pretreatment sequence diversity differences in the full-length hepatitis C virus open reading frame correlate with early response to therapy
    • Donlin MJ, Cannon NA, Yao E, et al. Pretreatment sequence diversity differences in the full-length hepatitis C virus open reading frame correlate with early response to therapy. J Virol 2007; 81: 8211-24.
    • (2007) J Virol , vol.81 , pp. 8211-8224
    • Donlin, M.J.1    Cannon, N.A.2    Yao, E.3
  • 31
    • 36549058800 scopus 로고    scopus 로고
    • Guidelines for the antiviral therapy of hepatitis C virus carriers with normal serum aminotransferase based on platelet counts
    • Okanoue T, Itoh Y, Minami M, et al. Guidelines for the antiviral therapy of hepatitis C virus carriers with normal serum aminotransferase based on platelet counts. Hepatol Res 2008; 38: 27-36.
    • (2008) Hepatol Res , vol.38 , pp. 27-36
    • Okanoue, T.1    Itoh, Y.2    Minami, M.3
  • 32
    • 0036196640 scopus 로고    scopus 로고
    • A natural intergenotypic of hepatitis C virus identified in St. Petersburg
    • Kalinina O, Norder H, Mukomolov S, et al. A natural intergenotypic of hepatitis C virus identified in St. Petersburg. J Virol 2002; 76: 4034-43.
    • (2002) J Virol , vol.76 , pp. 4034-4043
    • Kalinina, O.1    Norder, H.2    Mukomolov, S.3
  • 33
    • 1642503756 scopus 로고    scopus 로고
    • Evidence of intratypic recombination in natural populations of hepatitis C virus
    • Colina R, Casane D, Vasquez S, et al. Evidence of intratypic recombination in natural populations of hepatitis C virus. J Gen Virol 2004; 85: 31-7.
    • (2004) J Gen Virol , vol.85 , pp. 31-37
    • Colina, R.1    Casane, D.2    Vasquez, S.3
  • 34
    • 33749553986 scopus 로고    scopus 로고
    • A natural inter-genotypic (2b/1b) recombinant of hepatitis C virus in the Philippines
    • Kageyama S, Agdamag DM, Alesna ET, et al. A natural inter-genotypic (2b/1b) recombinant of hepatitis C virus in the Philippines. J Med Virol 2006; 78: 1423-8.
    • (2006) J Med Virol , vol.78 , pp. 1423-1428
    • Kageyama, S.1    Agdamag, D.M.2    Alesna, E.T.3
  • 35
    • 33746214690 scopus 로고    scopus 로고
    • Identification of a naturally occurring recombinant genotype 2/6 hepatitis C virus
    • Noppornpanth S, Lien TX, Poovorawan Y, et al. Identification of a naturally occurring recombinant genotype 2/6 hepatitis C virus. J Virol 2006; 80: 7569-77.
    • (2006) J Virol , vol.80 , pp. 7569-7577
    • Noppornpanth, S.1    Lien, T.X.2    Poovorawan, Y.3
  • 36
    • 33751270386 scopus 로고    scopus 로고
    • Serendipitous identification of natural intergenotypic recombinants of hepatitis C virus in Ireland
    • Moreau I, Hegarty S, Levis J, et al. Serendipitous identification of natural intergenotypic recombinants of hepatitis C virus in Ireland. Virol J 2006; 3: 95.
    • (2006) Virol J , vol.3 , pp. 95
    • Moreau, I.1    Hegarty, S.2    Levis, J.3
  • 37
    • 34247111934 scopus 로고    scopus 로고
    • New natural intergenotypic (2/5) recombinant of hepatitis C virus
    • Legrand-Abravanel F, Claudinon J, Nicot F, et al. New natural intergenotypic (2/5) recombinant of hepatitis C virus. J Virol 2007; 81: 4357-62.
    • (2007) J Virol , vol.81 , pp. 4357-4362
    • Legrand-Abravanel, F.1    Claudinon, J.2    Nicot, F.3
  • 38
    • 42649083676 scopus 로고    scopus 로고
    • Detection of hepatitis C virus natural recombinant RF1_2k/1b strain among intravenous drug users in Uzbekistan
    • Kurbanov F, Tanaka Y, Avazova D, et al. Detection of hepatitis C virus natural recombinant RF1_2k/1b strain among intravenous drug users in Uzbekistan. Hepatol Res 2008; 38: 457-64.
    • (2008) Hepatol Res , vol.38 , pp. 457-464
    • Kurbanov, F.1    Tanaka, Y.2    Avazova, D.3
  • 39
    • 74849128651 scopus 로고    scopus 로고
    • Molecular epidemiology of HCV genotypes among injection drug users in Taiwan: full-length sequences of two new subtype 6w strains and a recombinant form_2b6w
    • Lee YM, Lin HJ, Chen YJ, et al. Molecular epidemiology of HCV genotypes among injection drug users in Taiwan: full-length sequences of two new subtype 6w strains and a recombinant form_2b6w. J Med Virol 2010; 82: 57-68.
    • (2010) J Med Virol , vol.82 , pp. 57-68
    • Lee, Y.M.1    Lin, H.J.2    Chen, Y.J.3


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