Detection and normalization of medical terms using domain-specific term frequency and adaptive ranking

Proceedings of the IEEE/EMBS Region 8 International Conference on Information Technology Applications in Biomedicine, ITAB

Volumn , Issue , 2010, Pages

  Kim, Mi Young ^a   Goebel, Randy ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CLINICAL TRIAL; CUT-OFF; DOCUMENT RETRIEVAL; DOMAIN SPECIFIC; LANGUAGE MODELING; MEDICAL INFORMATION; MEDICAL TERMS; MEDLINE; NATURAL LANGUAGES; RANKING METHODS; RELEVANT DOCUMENTS; TERM FREQUENCY;

COMPUTATIONAL LINGUISTICS; HEALTH CARE; INFORMATION TECHNOLOGY; NATURAL LANGUAGE PROCESSING SYSTEMS; ONTOLOGY;

INFORMATION RETRIEVAL;

EID: 79951616814     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ITAB.2010.5687670     Document Type: Conference Paper

References (12)

1. O. Bodenreider, "The Unified Medical Language System (UMLS): integrating biomedical terminology". Nucleic Acids Res 32 Database issue:D267-70.2004. (Pubitemid 38081653)
2. M. Dai, "An Efficient Solution for Mapping Free Text to Ontology Terms". AMJA Summit on Translational Bioinformatics. San Francisco, CA,2008
3. S. Gaudan, A. Jimeno Yepes, V. Lee, D. Rebholz-Schuhmann, "Combining evidence, specificity, and proximity towards the normalization of gene ontology terms in text", EURASIP Journal on Bioiriformatics and Systems Biology, v.8 n.l, pp.I-9, January 2008
4. A. Jimeno, E. Jimenez-Ruiz, V. Lee, S. Gaudan, R. Berlanga, and D. Rebholz-Schuhmann, "Assessment of disease named entity recognition on a corpus of annotated sentences", BMC bioiriformatics, 9 Suppl 3():S3, 2008
5. F. Mougin, A. Burgun, and O. Bodenreider, "Mapping data elements to terminological resources for integrating biomedical data sources", BMC Bioinformatics 7(S-3), 2006
6. J. Hakenberg, C. Plake, L. Royer, and H. Strobelt, U. Leser, and M. Schroeder, "Gene mention normalization and interaction extraction with context models and sentence motifs", Genome Bioi, 9 Suppl 2: S14, 2008
7. H.W. Chun, Y. Tsuruoka, J.D. Kim, R. Shiba, N. Nagata, T. Hishiki, and J. Tsujii, "Extraction of gene-disease relations from Medline using domain dictionaries and machine learning" Pac Symp Biocomput, pp. 4-15,2006
8. Bundschus M, Dejori M, Stetter M, Tresp V, Kriegel HP, "Extraction of semantic biomedical relations from text using conditional random fields", BMC Bioinformatics, Apr 23;9:207, 2008
9. A. Neveol, W. Kim, W. John Wilbur, and Zhiyong Lu, "Exploring Two Biomedical Text Genres for Disease Recognition", Proc. of the Workshop on BioNLP, pp.144-152, 2009
10. L.K. Tanabe and W. J. Wilbur, "A Priority Model for Named Entities". Proc. of HLT- NAACL BioNLP Workshop, pp.33-40, 2006
11. Jay M. Ponte and W. Bruce Croft, "A Language Modeling Approach to Information Retrieval", Proc. of ACM SIGJR conference on Research and development in information retrieval, pp.206-214, 1998
12. th Joint Conference on Information Sciences, p. 1481-1484, 2005