The white-rotting genus Phanerochaete is polyphyletic and distributed throughout the phleboid clade of the Polyporales (Basidiomycota)

Fungal Diversity

Volumn 42, Issue , 2010, Pages 107-118

  Wu, Sheng Hua ^a   Nilsson, Henrik R ^b,c   Chen, Cheng Tao ^a   Yu, Shi Yi ^a   Hallenberg, Nils ^b  

^a NATIONAL MUSEUM OF NATURAL SCIENCE   (Taiwan)

^b UNIVERSITY OF GOTHENBURG   (Sweden)

^c UNIVERSITY OF TARTU   (Estonia)

Author keywords

Hjortstamia; Phlebiopsis; Phylogeny; Rhizochaete; Taxonomy

Indexed keywords

APHYLLOPHORALES; BACTERIA (MICROORGANISMS); BASIDIOMYCOTA; HYMENOCHAETALES; PHANEROCHAETE; PHANEROCHAETE VELUTINA; PHLEBIOPSIS; RHIZOCHAETE; THELEPHORA;

EID: 79951576650     PISSN: 15602745     EISSN: None     Source Type: Journal    
DOI: 10.1007/s13225-010-0031-7     Document Type: Article

References (39)

1. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW (2009) GenBank. Nucleic Acids Res 37: D26-D31
3. Bidartondo M (2008) Preserving accuracy in GenBank. Science 319:1616
4. Binder M, Hibbett DS, Larsson KH, Larsson E, Langer E, Langer G (2005) The phylogenetic distribution of resupinate forms across the major clades of homobasidiomycetes. Syst Biodivers 3:113-157
5. Boidin J, Gilles G (2002) à propos du genre Lopharia sensu lato. Bull Soc Mycol Fr 118:91-115
6. Boidin J, Lanquetin P (1984) Répertoire des donées utiles pour effectuer les tests d'intercompatibilité chez basidiomycètes. III. Aphyllophorales non porées. Cryptogam Mycol 5:193-245
7. Boidin J, Mugnier J, Canales R (1998) Taxonomie moleculaire des Aphyllophorales. Mycotaxon 66:445-491
8. Burdsall HH Jr (1985) A contribution to the taxonomy of the genus Phanerochaete (Corticiaceae, Aphyllophorales). Mycol Mem 10:1-165
9. Donk MA (1964) A conspectus of the families of Aphyllophorales. Persoonia 3:199-324
10. Eriksson J, Ryvarden L (1976) The Corticiaceae of North Europe 4. Hyphodermella-Mycoacia. Fungiflora, Oslo
11. Eriksson J, Hjortstam K, Ryvarden L (1979) The Corticiaceae of North Europe 5. Mycoaciella-Phanerochaete. Fungiflora, Oslo
12. Farris JS, Albert VA, Källersjö M, Lipscomb D, Kluge AG (1996) Parsimony jackknifing outperforms neighbor-joining. Cladistics 12:99-124
13. Galtier N, Gouy M, Gautier C (1996) SeaView and Phylo-win, two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12:543-548
14. Gilbertson RL, Ryvarden L (1986) North American polypores, vol 1. Abortiporus-Lindtneria. Fungiflora, Oslo
15. Ginns J (1976) Merulius: s.s. and s.l., taxonomic disposition and identification of species. Can J Bot 54:100-167
16. Goloboff PA, Farris JS, Nixon KC (2008) TNT, a free program for phylogenetic analysis. Cladistics 24:774-786
17. Greslebin A, Nakasone KK, Rajchenberg M (2004) Rhizochaete, a new genus of phanerochaetoid fungi. Mycologia 96:260-271
18. Hibbett DS (2007) After the gold rush, or before the flood? Evolutionary morphology of mushroom-forming fungi (Agaricomycetes) in the early 21st century. Mycol Res 111:1001-1018
19. Hibbett DS, Binder M, Bischoff JM, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking R, Lumbsch T, Lutzoni F, Matheny PB, McLaughlin DJ, Powell MJ, Redhead S, Schoch CL, Spatafora JW, Stalpers JA, Vilgalys R, Aime MC, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai Y-C, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde K, Ironside JE, Kõljalg U, Kurtzman CP, Larsson K-H, Lichtwardt R, Longcore J, Mia̧dlikowska J, Miller A, Moncalvo J-M, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schüßler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiß M, White MM, Winka K, Yao Y-J, Zhang N (2007) A higher-level phylogenetic classification of the Fungi. Mycol Res 111:509-547
20. Hjortstam K (1998) A checklist to genera and species of corticoid fungi (Basidiomycotina, Aphyllophorales). Windahlia 23:1-54
21. Hjortstam K, Ryvarden L (1990) Lopharia and Porostereum (Corticiaceae). Synop Fungorum 4:1-68
22. Hjortstam K, Ryvarden L (2007) Checklist of corticoid fungi (Basidiomycotina) from the tropics, subtropics and the southern hemisphere. Synop Fungorum 22:27-146
23. Hjortstam K, Ryvarden L (2009) A preliminary checklist of Aphyllophorales from the Seychelles. Synop Fungorum 26:10-23
24. Jülich W (1978) Studies in resupinate Basidiomycetes. V. Persoonia 10:137-140
25. Jülich W (1981) Higher taxa of Basidiomycetes. Bibl Mycol 85:1-485
26. Katoh K, Toh H (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9:286-298
27. de Koker TH, Nakasone KK, Haarhof J, Burdsall HH Jr, Janse B J H (2003) Phylogenetic relationships of the genus Phanerochaete inferred from the internal transcribed spacer region. Mycol Res 107:1032-1040
28. Larsson K-H (2007) Re-thinking the classification of corticioid fungi. Mycol Res 111:1040-1063
29. Larsson K-H, Larsson E, Koljalg U (2004) High phylogenetic diversity among corticioid homobasidiomycetes. Mycol Res 108:983-1002
30. Moncalvo J-M, Vilgalys R, Readhead SA, Johnson JE, James TY, Aime MC, Hoffsetter V, Verduin S J W, Larsson E, Baroni TJ, Thorn RG, Jacobsson S, Clemencon H, Miller OK Jr (2002) One hundred and seventeen clades of euagarics. Mol Phylogenet Evol 23:257-400
31. Nakasone KK (1990) Cultural studies and identification of woodinhabiting Corticiaceae and selected Hymenomycetes from North America. Mycol Mem 15:1-412
32. Nilsson RH, Ryberg M, Kristiansson E, Abarenkov K, Larsson K-H, Koljalg U (2006) Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective. PLoS ONE 1: e59
33. Nylander J A A (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University
34. Parmasto E (1959) On the distribution of some rare species of Polyporaceae. Eesti NSV Tead Akad Toim Biol 8:266-278
35. Parmasto E (1968) Cospectus systematis Corticiacearum. Institute of Zoology and Botany, Tartu
36. Parmasto E (1986) On the origin of hymenomycetes (what are corticoid fungi). Windahlia 16:3-20
37. Parmasto E, Nilsson RH, Larsson K-H (2004) Cortbase version 2-extensive updates of a nomenclatural database for corticioid fungi (Hymenomycetes). Phyloinformatics 1:5
38. Ronquist F, Huelsenbeck JP (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574
39. Wu SH (1990) The Corticiaceae (Basidiomycetes) subfamilies Phlebioideae, Phanerochaetoideae, and Hyphodermoideae in Taiwan. Acta Bot Fenn 142:1-123