메뉴 건너뛰기




Volumn 12, Issue , 2011, Pages

Strain-specific copy number variation in the intelectin locus on the 129 mouse chromosome 1

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR NKX3.1; UNCLASSIFIED DRUG; CD244 PROTEIN, MOUSE; HOMEODOMAIN PROTEIN; IMMUNOGLOBULIN RECEPTOR; LECTIN; LEUKOCYTE ANTIGEN; NKX3 1 PROTEIN, MOUSE; NKX3-1 PROTEIN, MOUSE;

EID: 79951553427     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-110     Document Type: Article
Times cited : (19)

References (73)
  • 2
    • 0035968315 scopus 로고    scopus 로고
    • Human intelectin is a novel soluble lectin that recognizes galactofuranose in carbohydrate chains of bacterial cell wall
    • 10.1074/jbc.M103162200, 11313366
    • Tsuji S, Uehori J, Matsumoto M, Suzuki Y, Matsuhisa A, Toyoshima K, Seya T. Human intelectin is a novel soluble lectin that recognizes galactofuranose in carbohydrate chains of bacterial cell wall. Journal of Biological Chemistry 2001, 276:23456-23463. 10.1074/jbc.M103162200, 11313366.
    • (2001) Journal of Biological Chemistry , vol.276 , pp. 23456-23463
    • Tsuji, S.1    Uehori, J.2    Matsumoto, M.3    Suzuki, Y.4    Matsuhisa, A.5    Toyoshima, K.6    Seya, T.7
  • 3
    • 0035951070 scopus 로고    scopus 로고
    • Molecular cloning and functional expression of a human intestinal lactoferrin receptor
    • 10.1021/bi0155899, 11747454
    • Suzuki YA, Shin K, Lonnerdal B. Molecular cloning and functional expression of a human intestinal lactoferrin receptor. Biochemistry 2001, 40:15771-15779. 10.1021/bi0155899, 11747454.
    • (2001) Biochemistry , vol.40 , pp. 15771-15779
    • Suzuki, Y.A.1    Shin, K.2    Lonnerdal, B.3
  • 4
    • 0035093154 scopus 로고    scopus 로고
    • Human homologs of the Xenopus oocyte cortical granule lectin XL35
    • 10.1093/glycob/11.1.65, 11181563
    • Lee JK, Schnee J, Pang M, Wolfert M, Baum LG, Moremen KW, Pierce M. Human homologs of the Xenopus oocyte cortical granule lectin XL35. Glycobiology 2001, 11:65-73. 10.1093/glycob/11.1.65, 11181563.
    • (2001) Glycobiology , vol.11 , pp. 65-73
    • Lee, J.K.1    Schnee, J.2    Pang, M.3    Wolfert, M.4    Baum, L.G.5    Moremen, K.W.6    Pierce, M.7
  • 5
    • 0032578849 scopus 로고    scopus 로고
    • Cloning of the novel gene intelectin, which is expressed in intestinal paneth cells in mice
    • 10.1006/bbrc.1998.9513, 9790983
    • Komiya T, Tanigawa Y, Hirohashi S. Cloning of the novel gene intelectin, which is expressed in intestinal paneth cells in mice. Biochemical and Biophysical Research Communications 1998, 251:759-762. 10.1006/bbrc.1998.9513, 9790983.
    • (1998) Biochemical and Biophysical Research Communications , vol.251 , pp. 759-762
    • Komiya, T.1    Tanigawa, Y.2    Hirohashi, S.3
  • 6
    • 3242811092 scopus 로고    scopus 로고
    • Innate BALB/c enteric epithelial responses to Trichinella spiralis: inducible expression of a novel goblet cell lectin, intelectin-2, and its natural deletion in C57BL/10 mice
    • Pemberton A, Knight P, Gamble J, Colledge W, Lee J, Pierce M, Miller H. Innate BALB/c enteric epithelial responses to Trichinella spiralis: inducible expression of a novel goblet cell lectin, intelectin-2, and its natural deletion in C57BL/10 mice. Journal of Immunology 2004, 173:1894-1901.
    • (2004) Journal of Immunology , vol.173 , pp. 1894-1901
    • Pemberton, A.1    Knight, P.2    Gamble, J.3    Colledge, W.4    Lee, J.5    Pierce, M.6    Miller, H.7
  • 7
    • 70349554692 scopus 로고    scopus 로고
    • Expression of three intelectins in sheep and response to a Th2 environment
    • 10.1051/vetres/2009035, 2733327, 19549487
    • French AT, Knight PA, Smith WD, Pate JA, Miller HR, Pemberton AD. Expression of three intelectins in sheep and response to a Th2 environment. Vet Res 2009, 40:53. 10.1051/vetres/2009035, 2733327, 19549487.
    • (2009) Vet Res , vol.40 , pp. 53
    • French, A.T.1    Knight, P.A.2    Smith, W.D.3    Pate, J.A.4    Miller, H.R.5    Pemberton, A.D.6
  • 8
    • 60249083675 scopus 로고    scopus 로고
    • Bovine intelectins: cDNA sequencing and expression in the bovine intestine
    • 10.1016/j.rvsc.2008.06.002, 18691728
    • Blease SC, French AT, Knight PA, Gally DL, Pemberton AD. Bovine intelectins: cDNA sequencing and expression in the bovine intestine. Res Vet Sci 2009, 86:254-256. 10.1016/j.rvsc.2008.06.002, 18691728.
    • (2009) Res Vet Sci , vol.86 , pp. 254-256
    • Blease, S.C.1    French, A.T.2    Knight, P.A.3    Gally, D.L.4    Pemberton, A.D.5
  • 11
    • 17644409070 scopus 로고    scopus 로고
    • The X-lectins: a new family with homology to the Xenopus laevis oocyte lectin XL-35
    • 10.1007/s10719-004-5534-6, 15750785
    • Lee JK, Baum LG, Moremen K, Pierce M. The X-lectins: a new family with homology to the Xenopus laevis oocyte lectin XL-35. Glycoconj J 2004, 21:443-450. 10.1007/s10719-004-5534-6, 15750785.
    • (2004) Glycoconj J , vol.21 , pp. 443-450
    • Lee, J.K.1    Baum, L.G.2    Moremen, K.3    Pierce, M.4
  • 12
    • 0030895387 scopus 로고    scopus 로고
    • Cloning and expression of a Xenopus laevis oocyte lectin and characterization of its mRNA levels during early development
    • 10.1093/glycob/7.3.367, 9147045
    • Lee JK, Buckhaults P, Wilkes C, Teilhet M, King ML, Moremen KW, Pierce M. Cloning and expression of a Xenopus laevis oocyte lectin and characterization of its mRNA levels during early development. Glycobiology 1997, 7:367-372. 10.1093/glycob/7.3.367, 9147045.
    • (1997) Glycobiology , vol.7 , pp. 367-372
    • Lee, J.K.1    Buckhaults, P.2    Wilkes, C.3    Teilhet, M.4    King, M.L.5    Moremen, K.W.6    Pierce, M.7
  • 13
    • 3342880250 scopus 로고    scopus 로고
    • Baculovirus expression of mouse lactoferrin receptor and tissue distribution in the mouse
    • 10.1023/B:BIOM.0000027709.42733.e4, 15222482
    • Suzuki YA, Lonnerdal B. Baculovirus expression of mouse lactoferrin receptor and tissue distribution in the mouse. Biometals 2004, 17:301-309. 10.1023/B:BIOM.0000027709.42733.e4, 15222482.
    • (2004) Biometals , vol.17 , pp. 301-309
    • Suzuki, Y.A.1    Lonnerdal, B.2
  • 16
    • 53349091016 scopus 로고    scopus 로고
    • Decreased plasma omentin-1 levels in Type 1 diabetes mellitus
    • 10.1111/j.1464-5491.2008.02568.x, 19046210
    • Tan BK, Pua S, Syed F, Lewandowski KC, O'Hare JP, Randeva HS. Decreased plasma omentin-1 levels in Type 1 diabetes mellitus. Diabet Med 2008, 25:1254-1255. 10.1111/j.1464-5491.2008.02568.x, 19046210.
    • (2008) Diabet Med , vol.25 , pp. 1254-1255
    • Tan, B.K.1    Pua, S.2    Syed, F.3    Lewandowski, K.C.4    O'Hare, J.P.5    Randeva, H.S.6
  • 19
    • 1842528161 scopus 로고    scopus 로고
    • Proteomic analysis of mouse jejunal epithelium and its response to infection with the intestinal nematode, Trichinella spiralis
    • 10.1002/pmic.200300658, 15048991
    • Pemberton AD, Knight PA, Wright SH, Miller HR. Proteomic analysis of mouse jejunal epithelium and its response to infection with the intestinal nematode, Trichinella spiralis. Proteomics 2004, 4:1101-1108. 10.1002/pmic.200300658, 15048991.
    • (2004) Proteomics , vol.4 , pp. 1101-1108
    • Pemberton, A.D.1    Knight, P.A.2    Wright, S.H.3    Miller, H.R.4
  • 20
    • 21544454393 scopus 로고    scopus 로고
    • Identification of novel genes in intestinal tissue which are regulated post infection with an intestinal nematode parasite
    • 10.1128/IAI.73.7.4025-4033.2005, 1168561, 15972490
    • Datta R, deSchoolmeester ML, Hedeler C, Paton N, Brass AM, Else KJ. Identification of novel genes in intestinal tissue which are regulated post infection with an intestinal nematode parasite. Infection and Immunity 2005, 73:4025-4033. 10.1128/IAI.73.7.4025-4033.2005, 1168561, 15972490.
    • (2005) Infection and Immunity , vol.73 , pp. 4025-4033
    • Datta, R.1    deSchoolmeester, M.L.2    Hedeler, C.3    Paton, N.4    Brass, A.M.5    Else, K.J.6
  • 22
    • 77249117206 scopus 로고    scopus 로고
    • Intelectin is required for IL-13-induced monocyte chemotactic protein-1 and -3 expression in lung epithelial cells and promotes allergic airway inflammation
    • 10.1152/ajplung.90612.2008, 19965981
    • Gu N, Kang G, Jin C, Xu Y, Zhang Z, Erle DJ, Zhen G. Intelectin is required for IL-13-induced monocyte chemotactic protein-1 and -3 expression in lung epithelial cells and promotes allergic airway inflammation. Am J Physiol Lung Cell Mol Physiol 298:L290-296. 10.1152/ajplung.90612.2008, 19965981.
    • Am J Physiol Lung Cell Mol Physiol , vol.298
    • Gu, N.1    Kang, G.2    Jin, C.3    Xu, Y.4    Zhang, Z.5    Erle, D.J.6    Zhen, G.7
  • 24
    • 0037500141 scopus 로고    scopus 로고
    • Evolution by gene duplication: an update
    • Zhang J. Evolution by gene duplication: an update. Trends Ecol Evol 2003, 18:292-298.
    • (2003) Trends Ecol Evol , vol.18 , pp. 292-298
    • Zhang, J.1
  • 25
    • 33744785379 scopus 로고    scopus 로고
    • An epigenetic state associated with areas of gene duplication
    • 10.1101/gr.5023706, 1473183, 16687731
    • Gimelbrant AA, Chess A. An epigenetic state associated with areas of gene duplication. Genome Res 2006, 16:723-729. 10.1101/gr.5023706, 1473183, 16687731.
    • (2006) Genome Res , vol.16 , pp. 723-729
    • Gimelbrant, A.A.1    Chess, A.2
  • 26
    • 0034684681 scopus 로고    scopus 로고
    • Delayed expulsion of the nematode Trichinella spiralis in mice lacking the mucosal mast cell-specific granule chymase, mouse mast cell protease-1
    • 10.1084/jem.192.12.1849, 2213497, 11120781
    • Knight PA, Wright SH, Lawrence CE, Paterson YY, Miller HR. Delayed expulsion of the nematode Trichinella spiralis in mice lacking the mucosal mast cell-specific granule chymase, mouse mast cell protease-1. Journal of Experimental Medicine 2000, 192:1849-1856. 10.1084/jem.192.12.1849, 2213497, 11120781.
    • (2000) Journal of Experimental Medicine , vol.192 , pp. 1849-1856
    • Knight, P.A.1    Wright, S.H.2    Lawrence, C.E.3    Paterson, Y.Y.4    Miller, H.R.5
  • 29
    • 58149507192 scopus 로고    scopus 로고
    • Effects of retroviruses on host genome function
    • 10.1146/annurev.genet.42.110807.091501, 18694346
    • Jern P, Coffin JM. Effects of retroviruses on host genome function. Annu Rev Genet 2008, 42:709-732. 10.1146/annurev.genet.42.110807.091501, 18694346.
    • (2008) Annu Rev Genet , vol.42 , pp. 709-732
    • Jern, P.1    Coffin, J.M.2
  • 31
    • 0034076151 scopus 로고    scopus 로고
    • Molecular cloning of transmembrane and soluble forms of a novel rat natural killer cell receptor related to 2B4
    • 10.1007/s002510050624, 10803843
    • Kumaresan PR, Stepp SE, Bennett M, Kumar V, Mathew PA. Molecular cloning of transmembrane and soluble forms of a novel rat natural killer cell receptor related to 2B4. Immunogenetics 2000, 51:306-313. 10.1007/s002510050624, 10803843.
    • (2000) Immunogenetics , vol.51 , pp. 306-313
    • Kumaresan, P.R.1    Stepp, S.E.2    Bennett, M.3    Kumar, V.4    Mathew, P.A.5
  • 32
    • 38849101781 scopus 로고    scopus 로고
    • Significant gene content variation characterizes the genomes of inbred mouse strains
    • 10.1101/gr.6754607, 2099583, 17989247
    • Cutler G, Marshall LA, Chin N, Baribault H, Kassner PD. Significant gene content variation characterizes the genomes of inbred mouse strains. Genome Res 2007, 17:1743-1754. 10.1101/gr.6754607, 2099583, 17989247.
    • (2007) Genome Res , vol.17 , pp. 1743-1754
    • Cutler, G.1    Marshall, L.A.2    Chin, N.3    Baribault, H.4    Kassner, P.D.5
  • 33
    • 35649018206 scopus 로고    scopus 로고
    • Recurrent DNA copy number variation in the laboratory mouse
    • 10.1038/ng.2007.19, 17965714
    • Egan CM, Sridhar S, Wigler M, Hall IM. Recurrent DNA copy number variation in the laboratory mouse. Nat Genet 2007, 39:1384-1389. 10.1038/ng.2007.19, 17965714.
    • (2007) Nat Genet , vol.39 , pp. 1384-1389
    • Egan, C.M.1    Sridhar, S.2    Wigler, M.3    Hall, I.M.4
  • 34
    • 63449086972 scopus 로고    scopus 로고
    • The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells
    • 10.1038/ng.350, 2728431, 19270704
    • Cahan P, Li Y, Izumi M, Graubert TA. The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells. Nat Genet 2009, 41:430-437. 10.1038/ng.350, 2728431, 19270704.
    • (2009) Nat Genet , vol.41 , pp. 430-437
    • Cahan, P.1    Li, Y.2    Izumi, M.3    Graubert, T.A.4
  • 35
    • 77951860138 scopus 로고    scopus 로고
    • Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome
    • 10.1101/gr.102970.109, 2860164, 20308636
    • Quinlan AR, Clark RA, Sokolova S, Leibowitz ML, Zhang Y, Hurles ME, Mell JC, Hall IM. Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome. Genome Res 2010, 20:623-635. 10.1101/gr.102970.109, 2860164, 20308636.
    • (2010) Genome Res , vol.20 , pp. 623-635
    • Quinlan, A.R.1    Clark, R.A.2    Sokolova, S.3    Leibowitz, M.L.4    Zhang, Y.5    Hurles, M.E.6    Mell, J.C.7    Hall, I.M.8
  • 36
    • 64849083125 scopus 로고    scopus 로고
    • CNV-seq, a new method to detect copy number variation using high-throughput sequencing
    • 10.1186/1471-2105-10-80, 2667514, 19267900
    • Xie C, Tammi MT. CNV-seq, a new method to detect copy number variation using high-throughput sequencing. BMC Bioinformatics 2009, 10:80. 10.1186/1471-2105-10-80, 2667514, 19267900.
    • (2009) BMC Bioinformatics , vol.10 , pp. 80
    • Xie, C.1    Tammi, M.T.2
  • 37
    • 34548488920 scopus 로고    scopus 로고
    • Haploinsufficient prostate tumor suppression by Nkx3.1: a role for chromatin accessibility in dosage-sensitive gene regulation
    • 10.1074/jbc.M702438200, 17602165
    • Mogal AP, van der Meer R, Crooke PS, Abdulkadir SA. Haploinsufficient prostate tumor suppression by Nkx3.1: a role for chromatin accessibility in dosage-sensitive gene regulation. J Biol Chem 2007, 282:25790-25800. 10.1074/jbc.M702438200, 17602165.
    • (2007) J Biol Chem , vol.282 , pp. 25790-25800
    • Mogal, A.P.1    van der Meer, R.2    Crooke, P.S.3    Abdulkadir, S.A.4
  • 38
    • 0034660036 scopus 로고    scopus 로고
    • DNA-binding sequence of the human prostate-specific homeodomain protein NKX3.1
    • 10.1093/nar/28.12.2389, 102730, 10871372
    • Steadman DJ, Giuffrida D, Gelmann EP. DNA-binding sequence of the human prostate-specific homeodomain protein NKX3.1. Nucleic Acids Res 2000, 28:2389-2395. 10.1093/nar/28.12.2389, 102730, 10871372.
    • (2000) Nucleic Acids Res , vol.28 , pp. 2389-2395
    • Steadman, D.J.1    Giuffrida, D.2    Gelmann, E.P.3
  • 39
    • 77955065411 scopus 로고    scopus 로고
    • Somatic expression of LINE-1 elements in human tissues
    • 10.1093/nar/gkq132, 2896524, 20215437
    • Belancio VP, Roy-Engel AM, Pochampally RR, Deininger P. Somatic expression of LINE-1 elements in human tissues. Nucleic Acids Res 2010, 38:3909-3922. 10.1093/nar/gkq132, 2896524, 20215437.
    • (2010) Nucleic Acids Res , vol.38 , pp. 3909-3922
    • Belancio, V.P.1    Roy-Engel, A.M.2    Pochampally, R.R.3    Deininger, P.4
  • 40
    • 2442680252 scopus 로고    scopus 로고
    • Analysis of segmental duplications and genome assembly in the mouse
    • 10.1101/gr.2238404, 479105, 15123579
    • Bailey JA, Church DM, Ventura M, Rocchi M, Eichler EE. Analysis of segmental duplications and genome assembly in the mouse. Genome Res 2004, 14:789-801. 10.1101/gr.2238404, 479105, 15123579.
    • (2004) Genome Res , vol.14 , pp. 789-801
    • Bailey, J.A.1    Church, D.M.2    Ventura, M.3    Rocchi, M.4    Eichler, E.E.5
  • 41
    • 39149133136 scopus 로고    scopus 로고
    • The two channel catfish intelectin genes exhibit highly differential patterns of tissue expression and regulation after infection with Edwardsiella ictaluri
    • Takano T, Sha Z, Peatman E, Terhune J, Liu H, Kucuktas H, Li P, Edholm ES, Wilson M, Liu Z. The two channel catfish intelectin genes exhibit highly differential patterns of tissue expression and regulation after infection with Edwardsiella ictaluri. Dev Comp Immunol 2008, 32:697-705.
    • (2008) Dev Comp Immunol , vol.32 , pp. 697-705
    • Takano, T.1    Sha, Z.2    Peatman, E.3    Terhune, J.4    Liu, H.5    Kucuktas, H.6    Li, P.7    Edholm, E.S.8    Wilson, M.9    Liu, Z.10
  • 42
    • 0033674228 scopus 로고    scopus 로고
    • Coordinated localisation of mucins and trefoil peptides in the ulcer associated cell lineage and the gastrointestinal mucosa
    • 10.1136/gut.47.6.792, 1728152, 11076877
    • Longman RJ, Douthwaite J, Sylvester PA, Poulsom R, Corfield AP, Thomas MG, Wright NA. Coordinated localisation of mucins and trefoil peptides in the ulcer associated cell lineage and the gastrointestinal mucosa. Gut 2000, 47:792-800. 10.1136/gut.47.6.792, 1728152, 11076877.
    • (2000) Gut , vol.47 , pp. 792-800
    • Longman, R.J.1    Douthwaite, J.2    Sylvester, P.A.3    Poulsom, R.4    Corfield, A.P.5    Thomas, M.G.6    Wright, N.A.7
  • 44
    • 0042787650 scopus 로고    scopus 로고
    • Haploinsufficiency at the Nkx3.1 locus. A paradigm for stochastic, dosage-sensitive gene regulation during tumor initiation
    • 10.1016/S1535-6108(03)00047-3, 12676585
    • Magee JA, Abdulkadir SA, Milbrandt J. Haploinsufficiency at the Nkx3.1 locus. A paradigm for stochastic, dosage-sensitive gene regulation during tumor initiation. Cancer Cell 2003, 3:273-283. 10.1016/S1535-6108(03)00047-3, 12676585.
    • (2003) Cancer Cell , vol.3 , pp. 273-283
    • Magee, J.A.1    Abdulkadir, S.A.2    Milbrandt, J.3
  • 45
    • 77649232845 scopus 로고    scopus 로고
    • Changes of serum omentin-1 levels in normal subjects and in patients with impaired glucose regulation and with newly diagnosed and untreated type 2 diabetes
    • 10.1016/j.diabres.2010.01.013, 20129687
    • Pan HY, Guo L, Li Q. Changes of serum omentin-1 levels in normal subjects and in patients with impaired glucose regulation and with newly diagnosed and untreated type 2 diabetes. Diabetes Res Clin Pract 2010, 88:29-33. 10.1016/j.diabres.2010.01.013, 20129687.
    • (2010) Diabetes Res Clin Pract , vol.88 , pp. 29-33
    • Pan, H.Y.1    Guo, L.2    Li, Q.3
  • 47
    • 77954233083 scopus 로고    scopus 로고
    • Effects of aerobic training on serum omentin-1 and cardiometabolic risk factors in overweight and obese men
    • Saremi A, Asghari M, Ghorbani A. Effects of aerobic training on serum omentin-1 and cardiometabolic risk factors in overweight and obese men. J Sports Sci 2010, 1-6.
    • (2010) J Sports Sci , pp. 1-6
    • Saremi, A.1    Asghari, M.2    Ghorbani, A.3
  • 49
    • 0034905327 scopus 로고    scopus 로고
    • 2B4 (CD244) and CS1: novel members of the CD2 subset of the immunoglobulin superfamily molecules expressed on natural killer cells and other leukocytes
    • 10.1034/j.1600-065X.2001.1810120.x, 11513145
    • Boles KS, Stepp SE, Bennett M, Kumar V, Mathew PA. 2B4 (CD244) and CS1: novel members of the CD2 subset of the immunoglobulin superfamily molecules expressed on natural killer cells and other leukocytes. Immunol Rev 2001, 181:234-249. 10.1034/j.1600-065X.2001.1810120.x, 11513145.
    • (2001) Immunol Rev , vol.181 , pp. 234-249
    • Boles, K.S.1    Stepp, S.E.2    Bennett, M.3    Kumar, V.4    Mathew, P.A.5
  • 50
    • 0032956398 scopus 로고    scopus 로고
    • Activating interactions in human NK cell recognition: the role of 2B4-CD48
    • 10.1002/(SICI)1521-4141(199905)29:05<1676::AID-IMMU1676>3.0.CO;2-Y, 10359122
    • Nakajima H, Cella M, Langen H, Friedlein A, Colonna M. Activating interactions in human NK cell recognition: the role of 2B4-CD48. Eur J Immunol 1999, 29:1676-1683. 10.1002/(SICI)1521-4141(199905)29:05<1676::AID-IMMU1676>3.0.CO;2-Y, 10359122.
    • (1999) Eur J Immunol , vol.29 , pp. 1676-1683
    • Nakajima, H.1    Cella, M.2    Langen, H.3    Friedlein, A.4    Colonna, M.5
  • 52
    • 0033922792 scopus 로고    scopus 로고
    • Polymorphism in the 2B4 gene of inbred mouse strains
    • 10.1007/s002510000198, 10941850
    • Kumaresan PR, Huynh VT, Mathew PA. Polymorphism in the 2B4 gene of inbred mouse strains. Immunogenetics 2000, 51:758-761. 10.1007/s002510000198, 10941850.
    • (2000) Immunogenetics , vol.51 , pp. 758-761
    • Kumaresan, P.R.1    Huynh, V.T.2    Mathew, P.A.3
  • 53
    • 79952192312 scopus 로고    scopus 로고
    • Ensembl Release 46
    • Ensembl Release 46. , http://aug2007.archive.ensembl.org/
  • 54
    • 0031955116 scopus 로고    scopus 로고
    • Consed: a graphical tool for sequence finishing
    • Gordon D, Abajian C, Green P. Consed: a graphical tool for sequence finishing. Genome Res 1998, 8:195-202.
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 55
    • 79952189422 scopus 로고    scopus 로고
    • NCBI microbial genomes BLAST
    • NCBI microbial genomes BLAST. , http://www.ncbi.nlm.nih.gov/sutils/genom_table.cgi
  • 56
    • 84874604550 scopus 로고    scopus 로고
    • FASTX-Toolkit
    • FASTX-Toolkit. , http://hannonlab.cshl.edu/fastx_toolkit/
  • 57
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • 10.1101/gr.078212.108, 2577856, 18714091
    • Li H, Ruan J, Durbin R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 2008, 18:1851-1858. 10.1101/gr.078212.108, 2577856, 18714091.
    • (2008) Genome Res , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 58
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • 10.1101/gr.074492.107, 2336801, 18349386
    • Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008, 18:821-829. 10.1101/gr.074492.107, 2336801, 18349386.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 59
    • 0035189310 scopus 로고    scopus 로고
    • Spidey: a tool for mRNA-to-genomic alignments
    • 311166, 11691860
    • Wheelan SJ, Church DM, Ostell JM. Spidey: a tool for mRNA-to-genomic alignments. Genome Res 2001, 11:1952-1957. 311166, 11691860.
    • (2001) Genome Res , vol.11 , pp. 1952-1957
    • Wheelan, S.J.1    Church, D.M.2    Ostell, J.M.3
  • 61
    • 79952190405 scopus 로고    scopus 로고
    • Softberry - RNASPL
    • Softberry - RNASPL. , http://linux1.softberry.com/berry.phtml?topic=rnaspl&group=programs&subgroup=gfind
  • 62
    • 54549111418 scopus 로고    scopus 로고
    • KnotInFrame: prediction of -1 ribosomal frameshift events
    • 10.1093/nar/gkn578, 2566878, 18820303
    • Theis C, Reeder J, Giegerich R. KnotInFrame: prediction of -1 ribosomal frameshift events. Nucleic Acids Res 2008, 36:6013-6020. 10.1093/nar/gkn578, 2566878, 18820303.
    • (2008) Nucleic Acids Res , vol.36 , pp. 6013-6020
    • Theis, C.1    Reeder, J.2    Giegerich, R.3
  • 63
    • 24944555175 scopus 로고    scopus 로고
    • RepeatMasker Open 3.0
    • RepeatMasker Open 3.0. , http://www.repeatmasker.org
  • 64
    • 0029654258 scopus 로고
    • A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
    • 10.1016/0378-1119(95)00714-8, 8566757
    • Sonnhammer EL, Durbin R. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene 1995, 167:GC1-10. 10.1016/0378-1119(95)00714-8, 8566757.
    • (1995) Gene , vol.167
    • Sonnhammer, E.L.1    Durbin, R.2
  • 65
    • 1542347045 scopus 로고    scopus 로고
    • ZPicture: dynamic alignment and visualization tool for analyzing conservation profiles
    • 10.1101/gr.2129504, 353235, 14993211
    • Ovcharenko I, Loots GG, Hardison RC, Miller W, Stubbs L. zPicture: dynamic alignment and visualization tool for analyzing conservation profiles. Genome Res 2004, 14:472-477. 10.1101/gr.2129504, 353235, 14993211.
    • (2004) Genome Res , vol.14 , pp. 472-477
    • Ovcharenko, I.1    Loots, G.G.2    Hardison, R.C.3    Miller, W.4    Stubbs, L.5
  • 67
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • 10.1093/nar/gkh340, 390337, 15034147
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32:1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 68
    • 45949109669 scopus 로고    scopus 로고
    • MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences
    • 69, 10.1093/bib/bbn017, 2562624, 18417537
    • Kumar S, Nei M, Dudley J, Tamura K. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 2008, 9:299-306. 69, 10.1093/bib/bbn017, 2562624, 18417537.
    • (2008) Brief Bioinform , vol.9 , pp. 299-306
    • Kumar, S.1    Nei, M.2    Dudley, J.3    Tamura, K.4
  • 69
    • 77958146520 scopus 로고    scopus 로고
    • Plotrix, a package in the red light district of R
    • Lemon J. Plotrix, a package in the red light district of R. R-News 2006, 6:8-12.
    • (2006) R-News , vol.6 , pp. 8-12
    • Lemon, J.1
  • 71
    • 3242888285 scopus 로고    scopus 로고
    • RVISTA 2.0: evolutionary analysis of transcription factor binding sites
    • 10.1093/nar/gkh383, 441521, 15215384
    • Loots GG, Ovcharenko I. rVISTA 2.0: evolutionary analysis of transcription factor binding sites. Nucleic Acids Res 2004, 32:W217-221. 10.1093/nar/gkh383, 441521, 15215384.
    • (2004) Nucleic Acids Res , vol.32
    • Loots, G.G.1    Ovcharenko, I.2
  • 72
    • 77950640390 scopus 로고    scopus 로고
    • The value of position-specific priors in motif discovery using MEME
    • 10.1186/1471-2105-11-179, 2868008, 20380693
    • Bailey TL, Boden M, Whitington T, Machanick P. The value of position-specific priors in motif discovery using MEME. BMC Bioinformatics 2010, 11:179. 10.1186/1471-2105-11-179, 2868008, 20380693.
    • (2010) BMC Bioinformatics , vol.11 , pp. 179
    • Bailey, T.L.1    Boden, M.2    Whitington, T.3    Machanick, P.4
  • 73
    • 0016700864 scopus 로고
    • Detection of specific sequences among DNA fragments separated by gel electrophoresis
    • 10.1016/S0022-2836(75)80083-0, 1195397
    • Southern EM. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 1975, 98:503-517. 10.1016/S0022-2836(75)80083-0, 1195397.
    • (1975) J Mol Biol , vol.98 , pp. 503-517
    • Southern, E.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.