메뉴 건너뛰기




Volumn 48, Issue 5, 2010, Pages 586-593

Evaluation of the sensitivity and specificity of primer pairs and the efficiency of RNA extraction procedures to improve noroviral detection from oysters by nested reverse transcription-polymerase chain reaction

Author keywords

nested RT PCR; norovirus; oyster; primer sensitivity and specificity; RNA extraction efficiency

Indexed keywords

DIAGNOSTIC AGENT; PRIMER DNA; RNA;

EID: 79951538115     PISSN: 12258873     EISSN: 12258873     Source Type: Journal    
DOI: 10.1007/s12275-010-0047-4     Document Type: Article
Times cited : (6)

References (31)
  • 1
    • 0034129940 scopus 로고    scopus 로고
    • Genetic classification of 'Norwalk-like viruses
    • Ando, T., J. S. Noel, and R. L. Fankhauser. 2000. Genetic classification of 'Norwalk-like viruses'. J. Infect. Dis. 181, S336-S348.
    • (2000) J. Infect. Dis. , vol.181
    • Ando, T.1    Noel, J.S.2    Fankhauser, R.L.3
  • 3
    • 32344446102 scopus 로고    scopus 로고
    • Emergence of a new norovirus genotype II.4 variant associated with global outbreaks of gastroenteritis
    • Bull, R. A., E. T. V. Tu, C. J. McIver, W. D. Rawlinson, and P. A. White. 2006. Emergence of a new norovirus genotype II. 4 variant associated with global outbreaks of gastroenteritis. J. Clin. Microbiol. 44, 327-333.
    • (2006) J. Clin. Microbiol. , vol.44 , pp. 327-333
    • Bull, R.A.1    Tu, E.T.V.2    McIver, C.J.3    Rawlinson, W.D.4    White, P.A.5
  • 4
    • 33745770265 scopus 로고    scopus 로고
    • Detection of human adenoviruses and enteroviruses in Korean oysters using cell culture, integrated cell culture-PCR, and direct PCR
    • Choo, Y. J. and S. J. Kim. 2006. Detection of human adenoviruses and enteroviruses in Korean oysters using cell culture, integrated cell culture-PCR, and direct PCR. J. Microbiol. 44, 162-170.
    • (2006) J. Microbiol. , vol.44 , pp. 162-170
    • Choo, Y.J.1    Kim, S.J.2
  • 5
    • 65549169079 scopus 로고    scopus 로고
    • Outbreaks of noroviral gastroenteritis in Florida, 2006-2007
    • Doyle, T. J., L. Stark, R. Hammond, and R. S. Hopkins. 2009. Outbreaks of noroviral gastroenteritis in Florida, 2006-2007. Epidemiol. Infect. 137, 617-625.
    • (2009) Epidemiol. Infect. , vol.137 , pp. 617-625
    • Doyle, T.J.1    Stark, L.2    Hammond, R.3    Hopkins, R.S.4
  • 7
    • 23744441977 scopus 로고    scopus 로고
    • Multiple norovirus genotypes characterised from an oyster-associated outbreak of gastroenteritis
    • Gallimore, C. I., J. S. Cheesbrough, K. Lamden, C. Bingham, and J. J. Gray. 2005. Multiple norovirus genotypes characterised from an oyster-associated outbreak of gastroenteritis. Int. J. Food Microbiol. 103, 323-330.
    • (2005) Int. J. Food Microbiol. , vol.103 , pp. 323-330
    • Gallimore, C.I.1    Cheesbrough, J.S.2    Lamden, K.3    Bingham, C.4    Gray, J.J.5
  • 8
    • 0342683816 scopus 로고    scopus 로고
    • Seminested RT-PCR systems for small round structured viruses and detection of enteric viruses in seafood
    • Häfliger, D., M. Gilgen, J. Lüthy, and P. Hübner. 1997. Seminested RT-PCR systems for small round structured viruses and detection of enteric viruses in seafood. Int. J. Food Microbiol. 37, 27-36.
    • (1997) Int. J. Food Microbiol. , vol.37 , pp. 27-36
    • Häfliger, D.1    Gilgen, M.2    Lüthy, J.3    Hübner, P.4
  • 10
    • 0037388633 scopus 로고    scopus 로고
    • Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR
    • Kageyama, T., S. Kojima, M. Shinohara, K. Uchida, S. Fukushi, F. B. Hoshino, N. Takeda, and K. Katayama. 2003. Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR. J. Clin. Microbiol. 41, 1548-1557.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 1548-1557
    • Kageyama, T.1    Kojima, S.2    Shinohara, M.3    Uchida, K.4    Fukushi, S.5    Hoshino, F.B.6    Takeda, N.7    Katayama, K.8
  • 12
    • 24744449119 scopus 로고    scopus 로고
    • Outbreaks of gastroenteritis that occurred during school excursions in Korea were associated with several waterborne strains of norovirus
    • Kim, S. H., D. S. Cheon, J. H. Kim, D. H. Lee, W. H. Jheong, Y. J. Heo, H. M. Chung, Y. Jee, and J. S. Lee. 2005. Outbreaks of gastroenteritis that occurred during school excursions in Korea were associated with several waterborne strains of norovirus. J. Clin. Microbiol. 43, 4836-4839.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 4836-4839
    • Kim, S.H.1    Cheon, D.S.2    Kim, J.H.3    Lee, D.H.4    Jheong, W.H.5    Heo, Y.J.6    Chung, H.M.7    Jee, Y.8    Lee, J.S.9
  • 13
    • 34447513270 scopus 로고    scopus 로고
    • Molecular identification and genetic analysis of norovirus genogroups I and II in water environments: Comparative analysis of different reverse transcription-PCR assays
    • La Rosa, G., S. Fontana, A. Di Grazia, M. Iaconelli, M. Pourshaban, and M. Muscillo. 2007. Molecular identification and genetic analysis of norovirus genogroups I and II in water environments: Comparative analysis of different reverse transcription-PCR assays. Appl. Environ. Microbiol. 73, 4152-4161.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 4152-4161
    • la Rosa, G.1    Fontana, S.2    Di Grazia, A.3    Iaconelli, M.4    Pourshaban, M.5    Muscillo, M.6
  • 14
    • 0033818477 scopus 로고    scopus 로고
    • A comparative analysis of Freon substitutes in the purification of reovirus and calicivirus
    • Mendez, I. I., L. L. Hermann, P. R. Hazelton, and K. M. Coombs. 2000. A comparative analysis of Freon substitutes in the purification of reovirus and calicivirus. J. Virol. Methods 90, 59-67.
    • (2000) J. Virol. Methods , vol.90 , pp. 59-67
    • Mendez, I.I.1    Hermann, L.L.2    Hazelton, P.R.3    Coombs, K.M.4
  • 15
  • 16
    • 0035022428 scopus 로고    scopus 로고
    • Improved method for the recovery of hepatitis A virus from oysters
    • Mullendore, J. L., M. D. Sobsey, and Y. C. Shieh. 2001. Improved method for the recovery of hepatitis A virus from oysters. J. Virol. Methods 94, 25-35.
    • (2001) J. Virol. Methods , vol.94 , pp. 25-35
    • Mullendore, J.L.1    Sobsey, M.D.2    Shieh, Y.C.3
  • 17
    • 2442666955 scopus 로고    scopus 로고
    • Detection of enteric viruses in shellfish from the Norwegian coast
    • Myrmel, M., E. M. M. Berg, E. Rimstad, and B. Grinde. 2004. Detection of enteric viruses in shellfish from the Norwegian coast. Appl. Environ. Microbiol. 70, 2678-2684.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 2678-2684
    • Myrmel, M.1    Berg, E.M.M.2    Rimstad, E.3    Grinde, B.4
  • 18
    • 0035722816 scopus 로고    scopus 로고
    • Selection of more appropriate PCR primer pairs for improved efficiency in detecting Norwalk-like virus (NLV) RNA
    • Naitou, H. and T. Morita. 2001. Selection of more appropriate PCR primer pairs for improved efficiency in detecting Norwalk-like virus (NLV) RNA. J. Gen. Appl. Microbiol. 47, 241-246.
    • (2001) J. Gen. Appl. Microbiol. , vol.47 , pp. 241-246
    • Naitou, H.1    Morita, T.2
  • 19
    • 55949131128 scopus 로고    scopus 로고
    • Bioaccumulation, retention, and depuration of enteric viruses by Crassostrea virginica and Crassostrea ariakensis oysters
    • Nappier, S. P., T. K. Graczyk, and K. J. Schwab. 2008. Bioaccumulation, retention, and depuration of enteric viruses by Crassostrea virginica and Crassostrea ariakensis oysters. Appl. Environ. Microbiol. 74, 6825-6831.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 6825-6831
    • Nappier, S.P.1    Graczyk, T.K.2    Schwab, K.J.3
  • 21
    • 33847134845 scopus 로고    scopus 로고
    • Genotyping and quantitation of noroviruses in oysters from two distinct sea areas in Japan
    • Nishida, T., O. Nishio, M. Kato, T. Chuma, H. Kato, H. Iwata, and H. Kimura. 2007. Genotyping and quantitation of noroviruses in oysters from two distinct sea areas in Japan. Microbiol. Immunol. 51, 177-184.
    • (2007) Microbiol. Immunol. , vol.51 , pp. 177-184
    • Nishida, T.1    Nishio, O.2    Kato, M.3    Chuma, T.4    Kato, H.5    Iwata, H.6    Kimura, H.7
  • 22
    • 24744437767 scopus 로고    scopus 로고
    • Genetic analysis of noroviruses in Chiba prefecture, Japan, between 1999 and 2004
    • Okada, M., T. Ogawa, I. Kaiho, and K. Shinozaki. 2005. Genetic analysis of noroviruses in Chiba prefecture, Japan, between 1999 and 2004. J. Clin. Microbiol. 43, 4391-4401.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 4391-4401
    • Okada, M.1    Ogawa, T.2    Kaiho, I.3    Shinozaki, K.4
  • 23
    • 0036136272 scopus 로고    scopus 로고
    • Improved detection of human enteric viruses in foods by RT-PCR
    • Sair, A. I., D. H. D'souza, C. L. Moe, and L. A. Jaykus. 2002. Improved detection of human enteric viruses in foods by RT-PCR. J. Virol. Methods 100, 57-69.
    • (2002) J. Virol. Methods , vol.100 , pp. 57-69
    • Sair, A.I.1    D'Souza, D.H.2    Moe, C.L.3    Jaykus, L.A.4
  • 24
    • 0031865535 scopus 로고    scopus 로고
    • Application of RT-PCR designed from the sequence of the local SRSV strain to the screening in viral gastroenteritis outbreaks
    • Saito, H., S. Saito, K. Kamada, S. Harata, H. Sato, M. Morita, and Y. Miyajima. 1998. Application of RT-PCR designed from the sequence of the local SRSV strain to the screening in viral gastroenteritis outbreaks. Microbiol. Immunol. 42, 439-446.
    • (1998) Microbiol. Immunol. , vol.42 , pp. 439-446
    • Saito, H.1    Saito, S.2    Kamada, K.3    Harata, S.4    Sato, H.5    Morita, M.6    Miyajima, Y.7
  • 25
    • 65549124502 scopus 로고    scopus 로고
    • Foodborne outbreak of gastroenteritis due to Norovirus and Vibrio parahaemolyticus
    • Sala, M. R., C. Arias, A. Domínguez, R. Bartolomé, and J. M. Muntada. 2009. Foodborne outbreak of gastroenteritis due to Norovirus and Vibrio parahaemolyticus. Epidemiol. Infect. 137, 626-629.
    • (2009) Epidemiol. Infect. , vol.137 , pp. 626-629
    • Sala, M.R.1    Arias, C.2    Domínguez, A.3    Bartolomé, R.4    Muntada, J.M.5
  • 29
    • 27544489421 scopus 로고    scopus 로고
    • Norovirus pathway in water environment estimated by genetic analysis of strains from patients of gastroenteritis, sewage, treated wastewater, river water and oysters
    • Ueki, Y., D. Sano, T. Watanabe, K. Akiyama, and T. Omura. 2005. Norovirus pathway in water environment estimated by genetic analysis of strains from patients of gastroenteritis, sewage, treated wastewater, river water and oysters. Water Res. 39, 4271-4280.
    • (2005) Water Res. , vol.39 , pp. 4271-4280
    • Ueki, Y.1    Sano, D.2    Watanabe, T.3    Akiyama, K.4    Omura, T.5
  • 30
    • 0003497338 scopus 로고
    • U.S. FoodDrug Administration, Arlington, VA, USA: AOAC International
    • U. S. Food and Drug Administration. 1992. Bacteriological analytical manual. AOAC International, Arlington, VA, USA.
    • (1992) Bacteriological Analytical Manual
  • 31
    • 0036701645 scopus 로고    scopus 로고
    • Rational optimization of generic primers used for Norwalk-like virus detection by reverse transcriptase polymerase chain reaction
    • Vennema, H., E. De Bruin, and M. Koopmans. 2002. Rational optimization of generic primers used for Norwalk-like virus detection by reverse transcriptase polymerase chain reaction. J. Clin. Virol. 25, 233-235.
    • (2002) J. Clin. Virol. , vol.25 , pp. 233-235
    • Vennema, H.1    de Bruin, E.2    Koopmans, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.