Phylogenetic analysis and antimicrobial activities of Streptomyces isolates from mangrove sediment

Journal of Basic Microbiology

Volumn 51, Issue 1, 2011, Pages 71-79

  Satheeja, Santhi V ^a   Jebakumar, Solomon R D ^a  

^a MADURAI KAMARAJ UNIVERSITY   (India)

Author keywords

16S rRNA; Actinomycete; Mangrove estuary; RFLP; Streptomyces

Indexed keywords

BACTERIAL DNA; RNA 16S;

ANTIBIOSIS; ARTICLE; AVICENNIA; CLASSIFICATION; GENETIC VARIABILITY; GENETICS; ISOLATION AND PURIFICATION; METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS; MICROBIOLOGY; PHYLOGENY; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SALMONELLA TYPHI; SEDIMENT; STREPTOMYCES;

ANTIBIOSIS; AVICENNIA; DNA, BACTERIAL; GENETIC VARIATION; GEOLOGIC SEDIMENTS; METHICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, RIBOSOMAL, 16S; SALMONELLA TYPHI; STREPTOMYCES; WATER MICROBIOLOGY;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS; SALMONELLA TYPHI; STAPHYLOCOCCUS AUREUS; STREPTOMYCES; STREPTOMYCES AUREUS;

EID: 79951537380     PISSN: 0233111X     EISSN: 15214028     Source Type: Journal    
DOI: 10.1002/jobm.201000107     Document Type: Article

References (33)

1. Watve, M.G., Tickoo, R., Jog, M.M., Bhole, B.D., 2001. How many antibiotics are produced by the genus Streptomyces? Arch. Microbiol., 176, 386-390.
2. Angert, E.R., 2005. Alternatives to binary fission in bacteria. Nat. Rev. Microbiol., 3, 214-224.
3. Bissett, A., Burke, C., Cook, P.L.M., Bowman, J.P., 2007. Bacterial community shifts in organically perturbed sediments. Environ. Microbiol., 9, 46-60.
4. Alongi, D.M., 2002. Present state and future of the world's mangrove forests. Environ. Conserv., 29, 331-349.
5. Urakawa, H., Kita-Tsukamoto, K., Ohwada, K., 1999. Microbial diversity in marine sediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis. Microbiology. 145, 3305-3315.
6. Kennedy, J., Codling, C.E., Jones, B.V., Dobson, A.D.W., Marchesi, J.R., 2008. Diversity of microbes associated with the marine sponge, Haliclona simulans, isolated from Irish waters and identification of polyketide synthase genes from the sponge metagenome. Environ. Microbiol., 10, 1888-1902.
7. Li, Z.Y., Liu, Y., 2006. Marine sponge Craniella austrialiensis -associated bacterial diversity revelation based on 16S rDNA library and biologically active actinomycetes screening, phylogenetic analysis. Lett. Appl. Microbiol., 43, 410-416.
8. Zhang, H., Zhang, W., Jin, Y., Jin, M., Yu, X., 2008. A comparative study on the phylogenetic diversity of culturable actinobacteria isolated from five marine sponge species. Antonie van Leeuwenhoek, 93, 241-248.
9. Lam, K.S., 2006. Discovery of novel metabolites from marine actinomycetes. Curr. Opin. Microbiol., 9, 245-251.
10. Jiang, C., Xu, L., 1996. Diversity of aquatic actinomycetes in lakes of the Middle Plateau, Yunnan, China. Appl. Environ. Microbiol., 62, 249-253.
11. Mincer, T.J., Jensen, P.R., Kauffman, C.A., Fenical, W., 2002. Widespread and persistent populations of a major new marine actinomycete taxon in ocean sediments. Appl. Environ. Microbiol., 68, 5005-5011.
12. You, J.L., Cao, L.X., Liu, G.F., Zhou, S.N., Tan, H.M., Lin, Y.C., 2005. Isolation and characterization of actinomycetes antagonistic to pathogenic Vibrio spp. from nearshore marine sediments. World J. Microbiol. Biotechnol., 21, 679-682.
13. Charteris, W.P., Kelly, P.M., Morelli, L., Collins, J.K., 2002. Antibiotic susceptibility of potentially probiotic Bifidobacterium isolates from the human gastrointestinal tract. Lett. Appl. Microbiol., 26, 333-337.
14. Cappuccino, J.G., Sherman, N., 2004. Microbiology: A Laboratory Manual. Singapore: Pearson Education Inc.
15. Shirling, E.B., Gottlieb, D., 1966. Methods for characterization of Streptomyces species. Int. J. Syst. Evol. Microbiol., 16, 313-340.
16. Hopwood, D.A., Bibb, M.J., Chater, K.F., Kieser, T., Bruton, C.J., Kieser, H., Lydiate, D.J., Smith, C.P., Ward, J.M., Schrempf, H., 1985. Genetic Manipulation of Streptomyces: A Laboratory Manual. John Innes Foundation, Norwich, UK.
17. Rohlf, F.J., 1998. NTSYS-pc. Numerical taxonomy and multivariate analysis system, version 2.02. Exeter Software, Setauket, NY.
18. Cole, J.R., Chai, B., Marsh, T.L., Farris, R.J., Wang, Q. et al., 2003. The Ribosomal Database Project (RDP-II): Previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids. Res., 31, 442-443.
19. Felsenstein, J., 2008. PHYLIP (Phylogeny Inference Package) version 3.68, Department of Genome Sciences, University of Washington, Seattle.
20. The NMITLI BioSuite Team, 2007. BioSuite: A comprehensive bioinformatics software package. Curr. Sci., 92, 29-38.
21. Houghton, R.A., 2007. Balancing the global carbon budget. Annu. Rev. Earth Planet Sci., 35, 313-347.
22. Zheng, Z.H., Zeng, W., Huang, Y.J., Yang, Z.Y., Li, J., Cai, H.R., Su, W.J., 2000. Detection of antitumor and antimicrobial activities in marine organism associated actinomycetes isolated from the Taiwan Straint, China. FEMS. Microbiol. Lett., 188, 87-91.
23. Moran, M.A., Rutherford, L.T., Hodson, R.E., 1995. Evidence for indigenous Streptomyces populations in a marine environment determined with a 16S rRNA probe. Appl. Environ. Microbiol., 61, 3695-3700.
24. Okazaki, T., Okami, Y., 1976. Studies on actinomycetes isolated from shallow sea and their antibiotic substances. In: Arai, T. (ed.), Actinomycetes, the Boundary Microorganisms. Toppan Co Ltd, Tokyo, pp. 123-161.
25. Prudhomme, J., McDaniel, E., Ponts, N., Bertani, S., Fenical, W., Jensen, P., Roch, K.L., 2008. Marine actinomycetes: A new source of compounds against the human malaria parasite. PLos One, 3, e2335, 1-8.
26. Solomon, R.D.J., Santhi, V.S., 2008. Purification of bioactive natural product against human microbial pathogens from marine seaweed Dictyota acutiloba J. Ag. World J. Microbiol. Biotechnol., 24, 1747-1752.
27. Halvorson, H.O., 1998. Aquaculture, marine sciences and oceanography: A confluence connection. New. Engl. J. Higher Ed. Econ. Dev., 13, 28-42.
28. Magarvey, N.A., Keller, J.M., Bernan, V., Dworkin, M., Sherman, D.H., 2004. Isolation and characterization of novel marine-derived actinomycete taxa rich in bioactive metabolites. Appl. Environ. Microbiol., 70, 7520-7529.
29. Blunt, J.W., Copp, B.R., Hu, W.P., Munro, M.H., Northcote, P.T., Prinsep, M.R., 2008. Marine natural products. Nat. Prod. Rep., 25, 35-94.
30. Baines, A.L.D., Xiao, K, and Kinkel, L.L., 2007. Lack of correspondence between genetic and phenotypic groups amongst soil-borne streptomycetes. FEMS Microbiol. Ecol., 59, 564-575.
31. Qin, S., Li, J., Chen, H., Zhao, G., Zhu, W., Jiang, C., Xu, L., Li, W., 2009. Isolation, diversity, and antimicrobial activity of rare actinobacteria from medicinal plants of tropical rain forests in Xishuangbanna, China. Appl. Environ. Microbiol., 75, 6176-6186.
32. Brinkman, F.S.L., Leipe, D.D. 2001. Phylogenetic analysis. In: Baxevanis, A.D., Ouellette, B.F.F. (eds.), Bioinformatics, a Practical Guide to the Analysis of Genes and Proteins. John Wiley and Sons Ltd, New York, pp. 323-358.
33. Zeng, Y., Li, H., Jiao, N., 2007. Phylogenetic diversity of planktonic archaea in the estuarine region of East China Sea. Microbiol. Res., 162, 26-36.