메뉴 건너뛰기




Volumn 27, Issue 4, 2011, Pages 524-533

Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID;

EID: 79951535078     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq661     Document Type: Article
Times cited : (15)

References (33)
  • 1
    • 58349086772 scopus 로고    scopus 로고
    • Sirius: decomposing isotope patterns for metabolite identification
    • Böcker, S. et al. (2009) Sirius: decomposing isotope patterns for metabolite identification. Bioinformatics, 25, 218-224.
    • (2009) Bioinformatics , vol.25 , pp. 218-224
    • Böcker, S.1
  • 2
    • 58349095392 scopus 로고    scopus 로고
    • Bag of peaks: interpretation of nmr spectrometry
    • Brelstaff, G. et al. (2009) Bag of peaks: interpretation of nmr spectrometry. Bioinformatics, 25, 258-264.
    • (2009) Bioinformatics , vol.25 , pp. 258-264
    • Brelstaff, G.1
  • 3
    • 34447566205 scopus 로고    scopus 로고
    • Robust baseline correction algorithm for signal dense nmr spectra
    • Chang, D. et al. (2007) Robust baseline correction algorithm for signal dense nmr spectra. J. Magn. Reson., 187, 288-292.
    • (2007) J. Magn. Reson. , vol.187 , pp. 288-292
    • Chang, D.1
  • 4
    • 0037370286 scopus 로고    scopus 로고
    • Factors affecting the robustness of metabolite fingerprinting using 1H-NMR spectra
    • Defernez, M. and Colquhoun, I.J. (2003) Factors affecting the robustness of metabolite fingerprinting using 1H-NMR spectra. Phytochemistry, 62, 1009-1017.
    • (2003) Phytochemistry , vol.62 , pp. 1009-1017
    • Defernez, M.1    Colquhoun, I.J.2
  • 6
    • 0038121709 scopus 로고    scopus 로고
    • Peak alignment of NMR signals by means of a genetic algorithm
    • Forshed, J. et al. (2003) Peak alignment of NMR signals by means of a genetic algorithm. Anal.Chim. Acta, 487, 189-199.
    • (2003) Anal. Chim. Acta , vol.487 , pp. 189-199
    • Forshed, J.1
  • 7
    • 23644457673 scopus 로고    scopus 로고
    • A comparison of methods for alignment of NMR peaks in the context of cluster analysis
    • Forshed, J. et al. (2005) A comparison of methods for alignment of NMR peaks in the context of cluster analysis. J. Pharm. Biomed. Anal., 38, 824-832.
    • (2005) J. Pharm. Biomed. Anal. , vol.38 , pp. 824-832
    • Forshed, J.1
  • 10
    • 16444371874 scopus 로고    scopus 로고
    • Genetic algorithm opimization for pre-processing and variable selection of spectroscopic data
    • Jarvis, R.M. and Goodacre, R. (2005) Genetic algorithm opimization for pre-processing and variable selection of spectroscopic data. Bioinformatics, 21, 860-868.
    • (2005) Bioinformatics , vol.21 , pp. 860-868
    • Jarvis, R.M.1    Goodacre, R.2
  • 11
    • 51849086430 scopus 로고    scopus 로고
    • Feature selection by lorentzian peak reconstruction for 1-h nmr post processing
    • IEEE Press
    • Koh, H.-W. et al. (2008) Feature selection by lorentzian peak reconstruction for 1-h nmr post processing. In Proceedings of CBMS 2008. IEEE Press, pp. 608-613.
    • (2008) Proceedings of CBMS 2008 , pp. 608-613
    • Koh, H.-W.1
  • 12
    • 84890262130 scopus 로고    scopus 로고
    • Generalizations of the lp norm for time series and its application to self-organizing maps
    • Cottrell, M. (ed)
    • Lee, J. and Verleysen, M. (2005) Generalizations of the lp norm for time series and its application to self-organizing maps. In Cottrell, M. (ed), 5th Workshop on Self-Organizing Maps., Vol. 1, pp. 733-740.
    • (2005) 5th Workshop on Self-Organizing Maps , vol.1 , pp. 733-740
    • Lee, J.1    Verleysen, M.2
  • 14
    • 79951524287 scopus 로고    scopus 로고
    • Mathworks Inc. Available at
    • Mathworks Inc. (2008) Matlab 2008b. Available at http://www.mathworks.com.
    • (2008) Matlab 2008b
  • 15
    • 33748453548 scopus 로고    scopus 로고
    • Metabolomics and the challenges ahead
    • Mendes, P. (2006) Metabolomics and the challenges ahead. Briefings in Bioinformatics, 7, 172.
    • (2006) Briefings in Bioinformatics , vol.7 , pp. 172
    • Mendes, P.1
  • 17
    • 34948814692 scopus 로고    scopus 로고
    • Metabolomics technologies and metabolite identification
    • Moco, S. et al. (2007) Metabolomics technologies and metabolite identification. Trends Anal. Chem., 26, 855-866.
    • (2007) Trends Anal. Chem. , vol.26 , pp. 855-866
    • Moco, S.1
  • 18
    • 33845993649 scopus 로고    scopus 로고
    • Unsupervised parameter optimization for automated retention time alignment of severely shifted gas chromatography data using the piecewise alignment algorithm
    • Pierce, K.M. et al. (2007) Unsupervised parameter optimization for automated retention time alignment of severely shifted gas chromatography data using the piecewise alignment algorithm. J. Chromatogr. A, 1141, 106-116.
    • (2007) J. Chromatogr. A , vol.1141 , pp. 106-116
    • Pierce, K.M.1
  • 19
    • 72449164088 scopus 로고    scopus 로고
    • icoshift: a versatile tool for the rapid alignment of 1D NMR spectra
    • Savorani, F. et al. (2010) icoshift: a versatile tool for the rapid alignment of 1D NMR spectra. J. Magn. Reson., 202, 190-202.
    • (2010) J. Magn. Reson. , vol.202 , pp. 190-202
    • Savorani, F.1
  • 22
    • 79951531403 scopus 로고    scopus 로고
    • Preprocessing of nuclear magnetic resonance spectrometry data
    • (MLR-01-2007). ISSN: 1865-3960
    • Schleif, F.-M. (2007) Preprocessing of nuclear magnetic resonance spectrometry data. Mach. Learn. Rep., 1(MLR-01-2007). ISSN: 1865-3960.
    • (2007) Mach. Learn. Rep. , pp. 1
    • Schleif, F.-M.1
  • 23
    • 79951532522 scopus 로고    scopus 로고
    • Nmrj: a feasability study for a fully Java based platform independent MR processing and analysing program
    • Glasgow
    • Schlumm, T. and Riemer, T. (2001) Nmrj: a feasability study for a fully Java based platform independent MR processing and analysing program. In Proceedings of the International Society for Magnetic Resonance in Medicine, Vol. 9, pp. 798, Glasgow.
    • (2001) Proceedings of the International Society for Magnetic Resonance in Medicine , vol.9 , pp. 798
    • Schlumm, T.1    Riemer, T.2
  • 24
    • 0001876029 scopus 로고
    • Computer simulations in magnetic resonance. an object oriented programming approach
    • Smith, S. et al. (1994) Computer simulations in magnetic resonance. an object oriented programming approach. J. Magn. Reson., 106a, 75-105.
    • (1994) J. Magn. Reson. , vol.106 A , pp. 75-105
    • Smith, S.1
  • 25
    • 64549094728 scopus 로고    scopus 로고
    • Metabolomic studies on geographical grapes and their wines using 1H NMR analysis coupled with multivariate statistics
    • Son, H. et al. (2009) Metabolomic studies on geographical grapes and their wines using 1H NMR analysis coupled with multivariate statistics. J. Agric. Food Chem., 57, 1481-1490.
    • (2009) J. Agric. Food Chem. , vol.57 , pp. 1481-1490
    • Son, H.1
  • 26
    • 67650927732 scopus 로고    scopus 로고
    • The cellular geometry of growth drives the amino acid economy of caenorhabditis elegans
    • Swire, J. et al. (2009) The cellular geometry of growth drives the amino acid economy of caenorhabditis elegans. Proc. Roy. Soc. B, 276 (1668), 2747-2754.
    • (2009) Proc. Roy. Soc. B , vol.276 , Issue.1668 , pp. 2747-2754
    • Swire, J.1
  • 27
    • 64249158872 scopus 로고    scopus 로고
    • Metabolomic profiling of drug responses in acute myeloid leukaemia cell lines
    • Tiziani, S. et al. (2009) Metabolomic profiling of drug responses in acute myeloid leukaemia cell lines. PLoS ONE, 4, e4251.
    • (2009) PLoS ONE , vol.4
    • Tiziani, S.1
  • 28
    • 0001173405 scopus 로고    scopus 로고
    • Partial linear fit: a new NMR spectroscopy preporcessing tool for pattern recognition applications
    • Vogels, J.T.W.E. et al. (1996) Partial linear fit: a new NMR spectroscopy preporcessing tool for pattern recognition applications. J. Chemom., 10, 425-438.
    • (1996) J. Chemom. , vol.10 , pp. 425-438
    • Vogels, J.T.W.E.1
  • 29
    • 0142040405 scopus 로고    scopus 로고
    • Metabolomics in systems biology
    • Weckwerth, W. (2003) Metabolomics in systems biology. Ann. Rev. Plant Biol., 54, 669-689.
    • (2003) Ann. Rev. Plant Biol. , vol.54 , pp. 669-689
    • Weckwerth, W.1
  • 30
    • 33745700438 scopus 로고    scopus 로고
    • Targeted profiling: Quantitative analysis of 1h nmr metabolomics data
    • Weljie, A.M. et al. (2006) Targeted profiling: Quantitative analysis of 1h nmr metabolomics data. Anal. Chem., 78, 4430-4442.
    • (2006) Anal. Chem. , vol.78 , pp. 4430-4442
    • Weljie, A.M.1
  • 31
    • 58149341281 scopus 로고    scopus 로고
    • Metabominer semi-automated identification of metabolites from 2d nmr spectra of complex biofluids
    • Xia, J. et al. (2008) Metabominer semi-automated identification of metabolites from 2d nmr spectra of complex biofluids. BMC Bioinformatics, 9, 507-522.
    • (2008) BMC Bioinformatics , vol.9 , pp. 507-522
    • Xia, J.1
  • 32
    • 49749092328 scopus 로고    scopus 로고
    • Baseline correction for nmr spectroscopic metabolomics data analysis
    • Xi, Y. and Rocke, D.M. (2008) Baseline correction for nmr spectroscopic metabolomics data analysis. BMC Bioinformatics, 9, 324-333.
    • (2008) BMC Bioinformatics , vol.9 , pp. 324-333
    • Xi, Y.1    Rocke, D.M.2
  • 33
    • 33749861562 scopus 로고    scopus 로고
    • Hires a tool for comprehensive assessment and interpretation of metabolomic data
    • Zhao, Q. et al. (2006) Hires a tool for comprehensive assessment and interpretation of metabolomic data. Bioinformatics, 22, 2562-2564.
    • (2006) Bioinformatics , vol.22 , pp. 2562-2564
    • Zhao, Q.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.