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Volumn 24, Issue 3, 2011, Pages 172-180

Feasibility of diagnosing renal allograft dysfunction by oligonucleotide array: Gene expression profile correlates with histopathology

Author keywords

Acute allograft rejection; Gene expression; Immune status; Oligonucleotide array; Renal transplant

Indexed keywords

AZATHIOPRINE; CCL1 CHEMOKINE; CD19 ANTIGEN; CXCL13 CHEMOKINE; CYCLOSPORIN A; CYTOCHROME P450 2J2; DACLIZUMAB; MITOGEN ACTIVATED PROTEIN KINASE 7; MYCOPHENOLIC ACID 2 MORPHOLINOETHYL ESTER; PREDNISOLONE; TACROLIMUS;

EID: 79951511541     PISSN: 09663274     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.trim.2010.11.008     Document Type: Article
Times cited : (7)

References (37)
  • 1
    • 33645319718 scopus 로고    scopus 로고
    • Overcoming barriers to long-term graft survival
    • Kaplan B. Overcoming barriers to long-term graft survival. Am J Kidney Dis 2006, 47:S52-S64.
    • (2006) Am J Kidney Dis , vol.47
    • Kaplan, B.1
  • 2
    • 33644844520 scopus 로고    scopus 로고
    • Microarray technology: beyond transcript profiling and genotype analysis
    • Hoheisel J.D. Microarray technology: beyond transcript profiling and genotype analysis. Nat Rev Genet 2006, 7:200-210.
    • (2006) Nat Rev Genet , vol.7 , pp. 200-210
    • Hoheisel, J.D.1
  • 3
    • 0035884614 scopus 로고    scopus 로고
    • Gene expression analysis in human renal allograft biopsy samples using high-density oligoarray technology
    • Akalin E., Hendrix R.C., Polavarapu R.G., Pearson T.C., Neylan J.F., Larsen C.P., et al. Gene expression analysis in human renal allograft biopsy samples using high-density oligoarray technology. Transplantation 2001, 72:948-953.
    • (2001) Transplantation , vol.72 , pp. 948-953
    • Akalin, E.1    Hendrix, R.C.2    Polavarapu, R.G.3    Pearson, T.C.4    Neylan, J.F.5    Larsen, C.P.6
  • 4
    • 0035967217 scopus 로고    scopus 로고
    • Noninvasive diagnosis of renal-allograft rejection by measurement of messenger RNA for perforin and granzyme B in urine
    • Li B., Hartono C., Ding R., Sharma V.K., Ramaswamy R., Qian B., et al. Noninvasive diagnosis of renal-allograft rejection by measurement of messenger RNA for perforin and granzyme B in urine. N Engl J Med 2001, 344:947-954.
    • (2001) N Engl J Med , vol.344 , pp. 947-954
    • Li, B.1    Hartono, C.2    Ding, R.3    Sharma, V.K.4    Ramaswamy, R.5    Qian, B.6
  • 5
  • 6
    • 2942587081 scopus 로고    scopus 로고
    • Arraying the orchestration of allograft pathology
    • Mansfield E.S., Sarwal M.M. Arraying the orchestration of allograft pathology. Am J Transplant 2004, 4:853-862.
    • (2004) Am J Transplant , vol.4 , pp. 853-862
    • Mansfield, E.S.1    Sarwal, M.M.2
  • 9
    • 0038679758 scopus 로고    scopus 로고
    • Molecular heterogeneity in acute renal allograft rejection identified by DNA microarray profiling
    • Sarwal M., Chua M.S., Kambham N., Hsieh S.C., Satterwhite T., Masek M., et al. Molecular heterogeneity in acute renal allograft rejection identified by DNA microarray profiling. N Engl J Med 2003, 349:125-138.
    • (2003) N Engl J Med , vol.349 , pp. 125-138
    • Sarwal, M.1    Chua, M.S.2    Kambham, N.3    Hsieh, S.C.4    Satterwhite, T.5    Masek, M.6
  • 10
    • 4344583771 scopus 로고    scopus 로고
    • Kidney transplant rejection and tissue injury by gene profiling of biopsies and peripheral blood lymphocytes
    • Flechner S.M., Kurian S.M., Head S.R., Sharp S.M., Whisenant T.C., Zhang J., et al. Kidney transplant rejection and tissue injury by gene profiling of biopsies and peripheral blood lymphocytes. Am J Transplant 2004, 4:1475-1489.
    • (2004) Am J Transplant , vol.4 , pp. 1475-1489
    • Flechner, S.M.1    Kurian, S.M.2    Head, S.R.3    Sharp, S.M.4    Whisenant, T.C.5    Zhang, J.6
  • 11
    • 0141905890 scopus 로고    scopus 로고
    • Evaluation of gene expression measurements from commercial microarray platforms
    • Tan P.K., Downey T.J., Spitznagel E.L., Xu P., Fu D., Dimitrov D.S., et al. Evaluation of gene expression measurements from commercial microarray platforms. Nucleic Acids Res 2003, 31:5676-5684.
    • (2003) Nucleic Acids Res , vol.31 , pp. 5676-5684
    • Tan, P.K.1    Downey, T.J.2    Spitznagel, E.L.3    Xu, P.4    Fu, D.5    Dimitrov, D.S.6
  • 12
    • 0034669668 scopus 로고    scopus 로고
    • Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays
    • Kane M.D., Jatkoe T.A., Stumpf C.R., Lu J., Thomas J.D., Madore S.J. Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays. Nucleic Acids Res 2000, 28:4552-4557.
    • (2000) Nucleic Acids Res , vol.28 , pp. 4552-4557
    • Kane, M.D.1    Jatkoe, T.A.2    Stumpf, C.R.3    Lu, J.4    Thomas, J.D.5    Madore, S.J.6
  • 13
    • 0035072249 scopus 로고    scopus 로고
    • Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
    • Hughes T.R., Mao M., Jones A.R., Burchard J., Marton M.J., Shannon K.W., et al. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat Biotechnol 2001, 19:342-347.
    • (2001) Nat Biotechnol , vol.19 , pp. 342-347
    • Hughes, T.R.1    Mao, M.2    Jones, A.R.3    Burchard, J.4    Marton, M.J.5    Shannon, K.W.6
  • 14
    • 12344277615 scopus 로고    scopus 로고
    • Expression profiling by oligonucleotide microarrays spotted on coated polymer slides
    • Nielsen P.S., Ohlsson H., Alsbo C., Andersen M.S., Kauppinen S. Expression profiling by oligonucleotide microarrays spotted on coated polymer slides. J Biotechnol 2005, 116:125-134.
    • (2005) J Biotechnol , vol.116 , pp. 125-134
    • Nielsen, P.S.1    Ohlsson, H.2    Alsbo, C.3    Andersen, M.S.4    Kauppinen, S.5
  • 16
    • 27544472676 scopus 로고    scopus 로고
    • Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary
    • Mao X., Cai T., Olyarchuk J.G., Wei L. Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary. Bioinformatics 2005, 21:3787-3793.
    • (2005) Bioinformatics , vol.21 , pp. 3787-3793
    • Mao, X.1    Cai, T.2    Olyarchuk, J.G.3    Wei, L.4
  • 18
    • 4544382046 scopus 로고    scopus 로고
    • Improved clinical outcomes in Chinese renal allograft recipients receiving lower dose immunosuppressants
    • Wu J.Y., Chen J.H., Wang Y.M., He Q., Wu D.B. Improved clinical outcomes in Chinese renal allograft recipients receiving lower dose immunosuppressants. Transplantation 2004, 78:713-718.
    • (2004) Transplantation , vol.78 , pp. 713-718
    • Wu, J.Y.1    Chen, J.H.2    Wang, Y.M.3    He, Q.4    Wu, D.B.5
  • 19
    • 33847259396 scopus 로고    scopus 로고
    • Clinical significance of protocol biopsy at one month posttransplantation in deceased-donor renal transplantation
    • Mao Y.Y., Chen J.H., Shou Z.F., Wu J.Y., Wang H.P., He Q. Clinical significance of protocol biopsy at one month posttransplantation in deceased-donor renal transplantation. Transpl Immunol 2007, 17:211-214.
    • (2007) Transpl Immunol , vol.17 , pp. 211-214
    • Mao, Y.Y.1    Chen, J.H.2    Shou, Z.F.3    Wu, J.Y.4    Wang, H.P.5    He, Q.6
  • 20
    • 33847761900 scopus 로고    scopus 로고
    • Banff ′05 meeting report: differential diagnosis of chronic allograft injury and elimination of chronic allograft nephropathy ('CAN')
    • Solez K., Colvin R.B., Racusen L.C., Sis B., Halloran P.F., Birk P.E., et al. Banff ′05 meeting report: differential diagnosis of chronic allograft injury and elimination of chronic allograft nephropathy ('CAN'). Am J Transplant 2007, 7:518-526.
    • (2007) Am J Transplant , vol.7 , pp. 518-526
    • Solez, K.1    Colvin, R.B.2    Racusen, L.C.3    Sis, B.4    Halloran, P.F.5    Birk, P.E.6
  • 21
    • 33645084814 scopus 로고    scopus 로고
    • Reporting of rejection after renal transplantation in large immunosuppressive trials: biopsy-proven, clinical, presumed, or treated rejection?
    • Fleiner F., Fritsche L., Glander P., Neumayer H.H., Budde K. Reporting of rejection after renal transplantation in large immunosuppressive trials: biopsy-proven, clinical, presumed, or treated rejection?. Transplantation 2006, 81:655-659.
    • (2006) Transplantation , vol.81 , pp. 655-659
    • Fleiner, F.1    Fritsche, L.2    Glander, P.3    Neumayer, H.H.4    Budde, K.5
  • 22
    • 0348143180 scopus 로고    scopus 로고
    • A random variance model for detection of differential gene expression in small microarray experiments
    • Wright G.W., Simon R.M. A random variance model for detection of differential gene expression in small microarray experiments. Bioinformatics 2003, 19:2448-2455.
    • (2003) Bioinformatics , vol.19 , pp. 2448-2455
    • Wright, G.W.1    Simon, R.M.2
  • 24
    • 37549029793 scopus 로고    scopus 로고
    • The properties of high-dimensional data spaces: implications for exploring gene and protein expression data
    • Clarke R., Ressom H.W., Wang A., Xuan J., Liu M.C., Gehan E.A., et al. The properties of high-dimensional data spaces: implications for exploring gene and protein expression data. Nat Rev Cancer 2008, 8:37-49.
    • (2008) Nat Rev Cancer , vol.8 , pp. 37-49
    • Clarke, R.1    Ressom, H.W.2    Wang, A.3    Xuan, J.4    Liu, M.C.5    Gehan, E.A.6
  • 25
    • 33644779844 scopus 로고    scopus 로고
    • WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data
    • Yi M., Horton J.D., Cohen J.C., Hobbs H.H., Stephens R.M. WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data. BMC Bioinform 2006, 7:30.
    • (2006) BMC Bioinform , vol.7 , pp. 30
    • Yi, M.1    Horton, J.D.2    Cohen, J.C.3    Hobbs, H.H.4    Stephens, R.M.5
  • 28
    • 73249144602 scopus 로고    scopus 로고
    • Functional genomic analysis of peripheral blood during early acute renal allograft rejection
    • Gunther O.P., Balshaw R.F., Scherer A., Hollander Z., Mui A., Triche T.J., et al. Functional genomic analysis of peripheral blood during early acute renal allograft rejection. Transplantation 2009, 88:942-951.
    • (2009) Transplantation , vol.88 , pp. 942-951
    • Gunther, O.P.1    Balshaw, R.F.2    Scherer, A.3    Hollander, Z.4    Mui, A.5    Triche, T.J.6
  • 29
    • 67650931599 scopus 로고    scopus 로고
    • Diagnosing rejection in renal transplants: a comparison of molecular- and histopathology-based approaches
    • Reeve J., Einecke G., Mengel M., Sis B., Kayser N., Kaplan B., et al. Diagnosing rejection in renal transplants: a comparison of molecular- and histopathology-based approaches. Am J Transplant 2009, 9:1802-1810.
    • (2009) Am J Transplant , vol.9 , pp. 1802-1810
    • Reeve, J.1    Einecke, G.2    Mengel, M.3    Sis, B.4    Kayser, N.5    Kaplan, B.6
  • 31
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M., Shalon D., Davis R.W., Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995, 270:467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 34
    • 3142550122 scopus 로고    scopus 로고
    • High-resolution global profiling of genomic alterations with long oligonucleotide microarray
    • Brennan C., Zhang Y., Leo C., Feng B., Cauwels C., Aguirre A.J., et al. High-resolution global profiling of genomic alterations with long oligonucleotide microarray. Cancer Res 2004, 64:4744-4748.
    • (2004) Cancer Res , vol.64 , pp. 4744-4748
    • Brennan, C.1    Zhang, Y.2    Leo, C.3    Feng, B.4    Cauwels, C.5    Aguirre, A.J.6
  • 35
    • 12244250731 scopus 로고    scopus 로고
    • The role of chemokines and chemokine receptors in alloantigen-independent and alloantigen-dependent transplantation injury
    • DeVries M.E., Hosiawa K.A., Cameron C.M., Bosinger S.E., Persad D., Kelvin A.A., et al. The role of chemokines and chemokine receptors in alloantigen-independent and alloantigen-dependent transplantation injury. Semin Immunol 2003, 15:33-48.
    • (2003) Semin Immunol , vol.15 , pp. 33-48
    • DeVries, M.E.1    Hosiawa, K.A.2    Cameron, C.M.3    Bosinger, S.E.4    Persad, D.5    Kelvin, A.A.6
  • 36
    • 16244408001 scopus 로고    scopus 로고
    • BCA-1/CXCL13 expression is associated with CXCR5-positive B-cell cluster formation in acute renal transplant rejection
    • Steinmetz O.M., Panzer U., Kneissler U., Harendza S., Lipp M., Helmchen U., et al. BCA-1/CXCL13 expression is associated with CXCR5-positive B-cell cluster formation in acute renal transplant rejection. Kidney Int 2005, 67:1616-1621.
    • (2005) Kidney Int , vol.67 , pp. 1616-1621
    • Steinmetz, O.M.1    Panzer, U.2    Kneissler, U.3    Harendza, S.4    Lipp, M.5    Helmchen, U.6


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