Spectroscopic characterization of the interaction of phenosafranin and safranin O with double Stranded, heat denatured and single stranded calf thymus DNA

Journal of Fluorescence

Volumn 21, Issue 1, 2011, Pages 247-255

  Saha, Ishita ^a   Kumar, Gopinatha Suresh ^a  

^a INDIAN INSTITUTE OF CHEMICAL BIOLOGY   (India)

Author keywords

DNA binding; Fluorescence techniques; Phenosafranin; Safranin O

Indexed keywords

ABSORBANCES; BINDING AFFINITIES; BINDING PROCESS; CALF THYMUS DNA; DNA BASE PAIRS; DNA BINDING; DNA CONFORMATIONS; DYE MOLECULE; FLUORESCENCE EMISSION; FLUORESCENCE QUENCHING; FLUORESCENCE SPECTRA; FLUORESCENCE TECHNIQUE; FLUORESCENCE TECHNIQUES; INTERCALATIVE BINDING; PHENOSAFRANIN; SAFRANIN O; SALT DEPENDENCE; SCATCHARD PLOTS; SINGLE-STRANDED DNA; SPECTROSCOPIC CHARACTERIZATION;

BINDING ENERGY; DENATURATION; DNA; ENERGY TRANSFER; FLUORESCENCE; LIGHT POLARIZATION; MOLECULES; QUENCHING;

NUCLEIC ACIDS;

DNA; PHENAZINE DERIVATIVE; PHENOSAFRANINE; SAFRANIN T;

ANIMAL; ARTICLE; CATTLE; CHEMISTRY; DNA DENATURATION; HEAT; METHODOLOGY; SPECTROFLUOROMETRY;

ANIMALS; CATTLE; DNA; HOT TEMPERATURE; NUCLEIC ACID DENATURATION; PHENAZINES; SPECTROMETRY, FLUORESCENCE;

EID: 79951509658     PISSN: 10530509     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10895-010-0712-3     Document Type: Article

References (30)

1. MJ Waring 1981 DNA modification and cancer Annu Rev Biochem 50 159 192 1:CAS:528:DyaL3MXkslaqtrY%3D 10.1146/annurev.bi.50.070181.001111 6168236
2. LH Hurley 2001 Secondary DNA structures as molecular targets for cancer therapeutics Biochem Soc Trans 29 692 696 1:CAS:528:DC%2BD3MXpt1Crs7o%3D 10.1042/BST0290692 11709056 (Pubitemid 33131762)
3. LH Hurley 2002 DNA and its associated processes as targets for cancer therapy Nat Rev 2 188 200 1:CAS:528:DC%2BD38Xis1KktL0%3D 10.1038/nrc749 (Pubitemid 37328788)
4. R Martines L Chacon-Garcia 2005 The search of DNA-intercalators as antitumoral drugs: what it worked and what did not work Curr Med Chem 12 2 127 151 (Pubitemid 40089830)
5. R Palchaudhuri PJ Hergenrother 2007 DNA as a target for anticancer compounds: methods to determine the mode of binding and the mechanism of action Curr Opin Biotechnol 18 6 497 503 1:CAS:528:DC%2BD1cXislOrsA%3D%3D 10.1016/j.copbio.2007.09.006 17988854
6. M Maiti G Suresh Kumar 2007 Molecular aspects on the Interaction of protoberberine, benzophenanthridine, and aristolochia group of alkaloids with nucleic acid structures and biological perspectives Med Res Rev 27 5 649 695 1:CAS:528:DC%2BD2sXhtFGgtL%2FN 10.1002/med.20087 16894530 (Pubitemid 47282448)
7. Henderson N, Dougherty T (1992) Photodynamic therapy: basic principles and clinical applications. Marcel Dekker Inc., New York
8. MF Broglia ML Gomez SG Bertolotti HA Montejanoz CM Previtali 2005 photophysical properties of safranine and phenosafranine J Photochem Photobiol A Chem 173 2 115 120 1:CAS:528:DC%2BD2MXkvFWmsro%3D 10.1016/j.jphotochem.2005.01. 010 (Pubitemid 40801140)
9. S Chatterjee S Nandi SC Bhattacharyya 2005 Fluorescence resonance energy transfer from fluorescein to safranine T in solutions and in micellar medium J Photochem Photobiol A Chem 173 2 221 227 1:CAS:528:DC%2BD2MXkvFWms7Y%3D 10.1016/j.jphotochem.2005.02.006 (Pubitemid 40801153)
10. RK Dutta SN Bhatt 1996 Interaction of phenazinium dyes and methyl orange with micells of various charge types Colloids Surf A: Physicochem Eng Asp 106 2-3 127 134 1:CAS:528:DyaK28XlvVKmsw%3D%3D 10.1016/0927-7757(95)03374-2 (Pubitemid 26149971)
11. W Sun J You X Hu K Jia 2006 Microdetection of double stranded DNA by linear sweep voltametry with phenosafranine Anal Sci 22 691 696 1:CAS:528:DC%2BD28XltVejsrg%3D 10.2116/analsci.22.691 16770046
12. XL Niu W Sun K Jiao 2009 Voltameric determination of hyaluronic acid based on its interaction with pehnosafranine Russ J Electrochem 45 8 902 907 1:CAS:528:DC%2BD1MXhtVygurzP 10.1134/S1023193509080102
13. PL Priya P Shanmughavel 2009 A docking model of human ribonucleotide reductase with flavin and phenosafranine Bioinformation 4 3 123 126 20198185
14. F Gao L Zhang GR Bian L Wang 2006 Determination of micro amounts of nucleic acids based on shifting the aggregate-monomer equilibrium of fluorescent dye Spectrosc Lett 39 73 84 1:CAS:528:DC%2BD28XkslegtA%3D%3D 10.1080/00387010500434412
15. HY Huang CM Wang 2010 Phenothiazine; an effective molecular adhesive for protein immobilization J Phys Chem C 114 8 3560 3567 1:CAS:528: DC%2BC3cXhslShsL4%3D 10.1021/jp9119099
16. D Bose D Ghosh P Das A Girigoswami D Sarkar N Chattopadhyay 2010 Binding of a cationic phenazinium dye in anionic liposomal membrane: a spectacular modification in the photophysics Chem Phys Lipids 163 1 94 101 1:CAS:528:DC%2BD1MXhsFGgsLzM 10.1016/j.chemphyslip.2009.10.003 19874810
17. JL Vennerstorm MT Makler CK Angerhofer JA Williams 1995 Antimalarial dyes revisited; Xanthines, azines, oxazines, and thiazines Antimicrob Agents Chemother 39 12 2671 2677
18. S Das G Suresh Kumar 2008 Molecular aspects on the interaction of phenosafranine to deoxyribonucleic acid: Model for intercalative drug-DNA binding J Mol Struct 872 1 56 63 1:CAS:528:DC%2BD2sXhtlWrtL7P 10.1016/j.molstruc.2007.02.016 (Pubitemid 350088011)
19. D Sarkar P Das S Basak N Chattopadhyay 2008 Binding interaction of cationic phenazinium dyes with calf thymus DNA: a comparative study J Phys Chem B 112 30 9243 9249 1:CAS:528:DC%2BD1cXot1ert7k%3D 10.1021/jp801659d 18610959
20. M Hossain G Suresh Kumar 2009 DNA intercalation of methylene blue and quinacrine: new insights into base and sequence specificity from structural and thermodynamic studies with polynucleotides Mol BioSyst 5 11 1311 1322 1:CAS:528:DC%2BD1MXht1CqsbjL 10.1039/b909563b 19823747
21. P Paul M Hossain G Suresh Kumar 2010 Biophysical studies on the base specificity and energetics of the DNA interaction of photoactive dye thionine; spectroscopic and calorimetric approach Biophys Chem 148 1-3 93 103 1:CAS:528:DC%2BC3cXkvFCis7g%3D 10.1016/j.bpc.2010.02.015 20231052
22. JP Daugherty SC Hixon KL Yielding 1979 Direct in vitro photoaffinity labeling of DNA with daunorubicin, adriamycin, and rubidazone Biochim Biophys Acta 565 1 13 21 1:CAS:528:DyaL3cXjs1ahsA%3D%3D 508759 (Pubitemid 10211005)
23. K Bhadra M Maiti G Suresh Kumar 2007 Molecular recognition of DNA by small molecules: AT base pair specific intercalative binding of cytotoxic plant alkaloid palmatine Biochim Biophys Acta 1770 7 1071 1080 1:CAS:528: DC%2BD2sXkvF2jtrk%3D 17434677 (Pubitemid 46678609)
24. MM Islam S Roy Chowdhury G Suresh Kumar 2009 Binding of the anticancer alkaloid sanguinarine to double stranded RNAs: insights into the structural and energetics aspects J Phys Chem B 113 4 1210 1224 1:CAS:528: DC%2BD1MXjtVelug%3D%3D 10.1021/jp806597w 19132839
25. PV Scaria RH Shafer 1991 Binding of ethidium bromide to a DNA triple helix: evidence for intercalation J Biol Chem 256 9 5417 5423 (Pubitemid 21909510)
26. R Sinha GS Kumar 2009 Interaction of isoquinoline alkaloids with an RNA triplex: atructural and thermodynamic studies of berberine, palmatine, and coralyne binding to poly(U).poly(A)*poly(U) J Phys Chem B 113 4 13410 13420 1:CAS:528:DC%2BD1MXhtFehu7vK 10.1021/jp9069515 19754095
27. A Larsson C Carlsson M Jonsson B Albinsson 1984 Characterization of the binding of the fluorescent dyes YO and YOYO to DNA by polarized light spectroscopy J Am Chem Soc 116 19 8459 8465 10.1021/ja00098a004
28. R Sinha MM Islam K Bhadra G Suresh Kumar A Banerjee M Maiti 2006 The binding of DNA intercalating and non-intercalating compounds to A-form and protonated form of poly(rC).poly(rG): Spectroscopic and viscometric study Bioorg Med Chem 14 3 800 814 1:CAS:528:DC%2BD2MXhtlSiurbP 10.1016/j.bmc.2005.09.007 16202606 (Pubitemid 41767582)
29. P Job 1928 Formation and stability of inorganic complexes in solution Ann Chim 9 113 203 1:CAS:528:DyaB1cXhvVWgsQ%3D%3D
30. EC Long JK Barton 1990 On demonstrating DNA intercalation Acc Chem Res 23 9 271 273 1:CAS:528:DyaK3cXlt1yisLw%3D 10.1021/ar00177a001