-
1
-
-
0037526102
-
1G37)methyltransferase: Insights into tRNA recognition
-
DOI 10.1093/emboj/cdg269
-
Ahn, H. J., Kim, H. W., Yoon, H. J., Lee, B. I., Suh, S. W., and Yang, J. K. (2003). Crystal structure of tRNA (m1G37) methyltransferase: insights into tRNA recognition. EMBO J. 22, 2593-2603. (Pubitemid 36712357)
-
(2003)
EMBO Journal
, vol.22
, Issue.11
, pp. 2593-2603
-
-
Ahn, H.J.1
Kim, H.-W.2
Yoon, H.-J.3
Lee, B.I.4
Suh, S.W.5
Yang, J.K.6
-
2
-
-
0036132209
-
SPOUT: A class of methyltransferases that includes spoU and trmD RNA methylase superfamilies, and novel superfamilies of predicted prokaryotic RNA methylases
-
Anantharaman, V., Koonin, E. V., and Aravind, L. (2002). SPOUT: a class of methyltransferases that includes spoU and trmD RNA methylase superfamilies, and novel superfamilies of predicted prokaryotic RNA methylases. J. Mol. Microbiol. Biotechnol. 4, 71-75. (Pubitemid 33121215)
-
(2002)
Journal of Molecular Microbiology and Biotechnology
, vol.4
, Issue.1
, pp. 71-75
-
-
Anantharam, V.1
Koonin, E.V.2
Aravind, L.3
-
3
-
-
33344476204
-
Identification and characterization of RsmE, the founding member of a new RNA base methyltransferase family
-
DOI 10.1261/rna.2283106
-
Basturea, G. N., Rudd, K. E., and Deutscher, M. P. (2006). Identification and characterization of RsmE, the founding member of a new RNA base methyltransferase family. RNA 12, 426-434. (Pubitemid 43290870)
-
(2006)
RNA
, vol.12
, Issue.3
, pp. 426-434
-
-
Basturea, G.N.1
Rudd, K.E.2
Deutscher, M.P.3
-
4
-
-
34748874591
-
Distinct Determinants of tRNA Recognition by the TrmD and Trm5 Methyl Transferases
-
DOI 10.1016/j.jmb.2007.08.010, PII S0022283607010819
-
Christian, T., and Hou, Y. M. (2007). Distinct determinants of tRNA recognition by the TrmD and Trm5 methyl transferases. J. Mol. Biol. 373, 623-632. (Pubitemid 47488397)
-
(2007)
Journal of Molecular Biology
, vol.373
, Issue.3
, pp. 623-632
-
-
Christian, T.1
Hou, Y.-M.2
-
5
-
-
0031045585
-
Preparation of selenomethionyl proteins for phase determination
-
DOI 10.1016/S0076-6879(97)76075-0
-
Doublié, S. (1997). Preparation of selenomethionyl proteins for phase determination. Meth. Enzymol. 276, 523-530. (Pubitemid 27085620)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 523-530
-
-
Doublie, S.1
-
6
-
-
0142216637
-
Insights into catalysis by a knotted TrmD tRNA methyltransferase
-
DOI 10.1016/j.jmb.2003.09.011
-
Elkins, P. A., Watts, J. M., Zalacain, M., van Thiel, A., Vitazka, P. R., Redlak, M., Andraos-Selim, C., Rastinejad, F., and Holmes, W. M. (2003). Insights into catalysis by a knotted TrmD tRNA methyltransferase. J. Mol. Biol. 333, 931-949. (Pubitemid 37324497)
-
(2003)
Journal of Molecular Biology
, vol.333
, Issue.5
, pp. 931-949
-
-
Elkins, P.A.1
Watts, J.M.2
Zalacain, M.3
Van Thiel, A.4
Vitazka, P.R.5
Redlak, M.6
Andraos-Selim, C.7
Rastinejad, F.8
Holmes, W.M.9
-
7
-
-
0141704142
-
Functional assignment based on structural analysis: Crystal structure of the yggJ protein (HI0303) of Haemophilus influenzae reveals an RNA methyltransferase with a deep trefoil knot
-
DOI 10.1002/prot.10510
-
Forouhar, F., Shen, J., Xiao, R., Acton, T. B., Montelione, G. T., and Tong, L. (2003). Functional assignment based on structural analysis: crystal structure of the yggJ protein (HI0303) of Haemophilus influenzae reveals an RNA methyltransferase with a deep trefoil knot. Proteins 53, 329-332. (Pubitemid 37193829)
-
(2003)
Proteins: Structure, Function and Genetics
, vol.53
, Issue.2
, pp. 329-332
-
-
Forouhar, F.1
Shen, J.2
Xiao, R.3
Acton, T.B.4
Montelione, G.T.5
Tong, L.6
-
8
-
-
71549158173
-
Stereochemical mechanisms of tRNA methyltransferases
-
Hou, Y. M., and Perona, J. J. (2010). Stereochemical mechanisms of tRNA methyltransferases. FEBS Lett. 584, 278-286.
-
(2010)
FEBS Lett.
, vol.584
, pp. 278-286
-
-
Hou, Y.M.1
Perona, J.J.2
-
9
-
-
39149096592
-
The yeast ribosome synthesis factor Emg1 is a novel member of the superfamily of alpha/beta knot fold methyltransferases
-
DOI 10.1093/nar/gkm1074
-
Leulliot, N., Bohnsack, M. T., Graille, M., Tollervey, D., and Van Tilbeurgh, H. (2008). The yeast ribosome synthesis factor Emg1 is a novel member of the superfamily of alpha/beta knot fold methyltransferases. Nucleic Acids Res. 36, 629-639. (Pubitemid 351255435)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.2
, pp. 629-639
-
-
Leulliot, N.1
Bohnsack, M.T.2
Graille, M.3
Tollervey, D.4
Van tilbeurgh, H.5
-
10
-
-
33644927702
-
Pumping RNA: Nuclear bodybuilding along the RNP pipeline
-
Matera, A. G., and Shpargel, K. B. (2006). Pumping RNA: nuclear bodybuilding along the RNP pipeline. Curr. Opin. Cell Biol. 18, 317-324.
-
(2006)
Curr. Opin. Cell. Biol.
, vol.18
, pp. 317-324
-
-
Matera, A.G.1
Shpargel, K.B.2
-
11
-
-
55849109584
-
The epigenetics of rRNA genes: From molecular to chromosome biology
-
McStay, B., and Grummt, I. (2008). The epigenetics of rRNA genes: from molecular to chromosome biology. Annu. Rev. Cell Dev. Biol. 24, 131-157.
-
(2008)
Annu. Rev. Cell. Dev. Biol.
, vol.24
, pp. 131-157
-
-
McStay, B.1
Grummt, I.2
-
12
-
-
0035997122
-
An enzyme with a deep trefoil knot for the active-site architecture
-
DOI 10.1107/S0907444902006601
-
Nureki, O., Shirouzu, M., Hashimoto, K., Ishitani, R., Terada, T., Tamakoshi, M., Oshima, T., Chijimatsu, M., Takio, K., Vassylyev, D. G., et al. (2002). An enzyme with a deep trefoil knot for the active-site architecture. Acta Crystallogr. D Biol. Crystallogr. 58, 1129-1137. (Pubitemid 34780746)
-
(2002)
Acta Crystallographica Section D: Biological Crystallography
, vol.58
, Issue.7
, pp. 1129-1137
-
-
Nureki, O.1
Shirouzu, M.2
Hashimoto, K.3
Ishitani, R.4
Terada, T.5
Tamakoshi, M.6
Oshima, T.7
Chijimatsu, M.8
Takio, K.9
Vassylyev, D.G.10
Shibata, T.11
Inoue, Y.12
Kuramitsu, S.13
Yokoyama, S.14
-
13
-
-
1842607227
-
Deep knot structure for construction of active site and cofactor binding site of tRNA modification enzyme
-
DOI 10.1016/j.str.2004.03.003, PII S0969212604000838
-
Nureki, O., Watanabe, K., Fukai, S., Ishii, R., Endo, Y., Hori, H., and Yokoyama, S. (2004). Deep knot structure for construction of active site and cofactor binding site of tRNA modification enzyme. Structure 12, 593-602. (Pubitemid 38447162)
-
(2004)
Structure
, vol.12
, Issue.4
, pp. 593-602
-
-
Nureki, O.1
Watanabe, K.2
Fukai, S.3
Ishii, R.4
Endo, Y.5
Hori, H.6
Yokoyama, S.7
-
14
-
-
77950589659
-
Flexible recognition of the tRNA G18 methylation target site by TrmH methyltransferase through first binding and induced fit processes
-
Ochi, A., Makabe, K., Kuwajima, K., and Hori, H. (2010). Flexible recognition of the tRNA G18 methylation target site by TrmH methyltransferase through first binding and induced fit processes. J. Biol. Chem. 285, 9018-9029.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 9018-9029
-
-
Ochi, A.1
Makabe, K.2
Kuwajima, K.3
Hori, H.4
-
15
-
-
52949120327
-
YbeA is the m3Psi methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA
-
Purta, E., Kaminska, K. H., Kasprzak, J. M., Bujnicki, J. M., and Douthwaite, S. (2008). YbeA is the m3Psi methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA. RNA 14, 2234-2244.
-
(2008)
RNA
, vol.14
, pp. 2234-2244
-
-
Purta, E.1
Kaminska, K.H.2
Kasprzak, J.M.3
Bujnicki, J.M.4
Douthwaite, S.5
-
16
-
-
41149170790
-
The crystal structure of Nep1 reveals an extended SPOUT-class methyltransferase fold and a pre-organized SAM-binding site
-
DOI 10.1093/nar/gkm1172
-
Taylor, A. B., Meyer, B., Leal, B. Z., Kötter, P., Schirf, V., Demeler, B., Hart, P. J., Entian, K. D., and Wöhnert, J. (2008). The crystal structure of Nep1 reveals an extended SPOUT-class methyltransferase fold and a pre-organized SAM-binding site. Nucleic Acids Res. 36, 1542-1554. (Pubitemid 351426107)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.5
, pp. 1542-1554
-
-
Taylor, A.B.1
Meyer, B.2
Leal, B.Z.3
Kotter, P.4
Schirf, V.5
Demeler, B.6
Hart, P.J.7
Entian, K.-D.8
Wohnert, J.9
-
17
-
-
34648820435
-
Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases
-
Tkaczuk, K. L., Dunin-Horkawicz, S., Purta, E., and Bujnicki, J. M. (2007). Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases. BMC Bioinformatics 8, 73-103.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 73-103
-
-
Tkaczuk, K.L.1
Dunin-Horkawicz, S.2
Purta, E.3
Bujnicki, J.M.4
-
18
-
-
15444370839
-
Roles of conserved amino acid sequence motifs in the SpoU (TrmH) RNA methyltransferase family
-
DOI 10.1074/jbc.M411209200
-
Watanabe, K., Nureki, O., Fukai, S., Ishii, R., Okamoto, H., Yokoyama, S., Endo, Y., and Hori, H. (2005). Roles of conserved amino acid sequence motifs in the SpoU (TrmH) RNA methyltransferase family. J. Biol. Chem. 280, 10368-10377. (Pubitemid 40395893)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.11
, pp. 10368-10377
-
-
Watanabe, K.1
Nureki, O.2
Fukai, S.3
Ishii, R.4
Okamoto, H.5
Yokoyama, S.6
Endo, Y.7
Hori, H.8
-
19
-
-
33845919828
-
Functional categorization of the conserved basic amino acid residues in TrmH (tRNA (Gm18) methyltansferase) enzymes
-
DOI 10.1074/jbc.M606141200
-
Watanabe, K., Nureki, O., Fukai, S., Endo, Y., and Hori, H. (2006). Functional categorization of the conserved basic amino acid residues in TrmH (tRNA (Gm18) methyltransferase) enzymes. J. Biol. Chem. 281, 34630-34639. (Pubitemid 46036669)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.45
, pp. 34630-34639
-
-
Watanabe, K.1
Nureki, O.2
Fukai, S.3
Endo, Y.4
Hori, H.5
-
20
-
-
77952314717
-
The ribosome assembly factor Nep1 responsible for Bowen-conradi syndrome is a pseudouridine-N1-specific methyltransferase
-
Wurm, J. P., Meyer, B., Bahr, U., Held, M., Frolow, O., Kötter, P., Engels, J. W., Heckel, A., Karas, M., Entian, K. D., et al. (2010). The ribosome assembly factor Nep1 responsible for Bowen-Conradi syndrome is a pseudouridine-N1-specific methyltransferase. Nucleic Acids Res. 38, 2387-2398.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 2387-2398
-
-
Wurm, J.P.1
Meyer, B.2
Bahr, U.3
Held, M.4
Frolow, O.5
Kötter, P.6
Engels, J.W.7
Heckel, A.8
Karas, M.9
Entian, K.D.10
|