How to use SNPs and other diagnostic diallelic genetic markers to identify the species composition of multi-species hybrids

Conservation Genetics Resources

Volumn 2, Issue 1, 2010, Pages 63-66

  Kalinowski, Steven T ^a  

^a MONTANA STATE UNIVERSITY   (United States)

Author keywords

Diagnostic; EM algorithm; Estimation; Hybridization; SNP

Indexed keywords

EID: 79751478319     PISSN: 18777252     EISSN: 18777260     Source Type: Journal    
DOI: 10.1007/s12686-009-9146-0     Document Type: Article

References (18)

1. Allendorf FW, Leary RF, Spruell P, Wenburg JK (2001) The problems with hybrids: setting conservation guidelines. Trends Ecol Evol 16:613-622
2. Anderson EC, Thompson EA (2002) A model-based method for identifying species hybrids using multilocus genetic data. Genetics 160:1217-1229
3. Benke RJ (2002) Trout and salmon of North America. The Free Press, New York
4. Ceppellini R, Siniscalco M, Smith CAB (1955) The estimation of gene frequencies in a randomly mating population. Ann Hum Genet 20:97-115
5. Dempster AP, Laird NM, Rubin DB (1977) Maximum likelihood estimation from incomplete data via the EM algorithm. J R Stat Soc B 39:1-38
6. Devroye L (1986) Non-uniform random variate generation. Springer, New York
7. Finger AJ, Stephens MR, Clipperton NW, May B (2009) Six diagnostic single nucleotide polymorphism markers for detecting introgression between cutthroat and rainbow trouts. Mol Ecol Resour 9:759-763
8. Kalinowski ST, Taper ML (2006) Maximum likelihood estimation of the frequency of null alleles at microsatellite loci. Conserv Genet 7:991-995
9. Leary RF, Gould WR, Sage GK (1996) Success of basibranchial teeth in indicating pure populations of rainbow trout and failure to indicate pure populations of westslope cutthroat trout. North Am J Fish Manag 16:210-213
10. McLachlan G, Krishnan T (1996) The EM algorithm and extensions. John Wiley and Sons, New York
11. Muhlfeld CC, Kalinowski ST, McMahon TE, Painter S, Leary RF, Taper ML, Allendorf FW (2009) Hybridization reduces fitness of cutthroat trout in the wild. Biol Lett 5:328-331
12. Ostberg CO, Rodriguez RJ (2004) Bi-parentally inherited speciesspecific markers identify hybridization between rainbow trout and cutthroat trout subspecies. Mol Ecol Notes 4:26-29
13. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945-959
14. Rhymer JM, Simberloff D (1996) Extinction by hybridization and introgression. Annu Rev Ecol Syst 27:83-109
15. Shepard BB, May BE, Urie W (2003) Status of westslope cutthroat trout (Oncorhynchus clarki lewisi) in the United States: 2002. Westslope Cutthroat Interagency Conservation Team
16. Stephens MR, Clipperton NW, May B (2009) Subspecies-informative SNP assays for evaluating introgression between native golden trout and introduced rainbow trout. Mol Ecol Resour 9:339-343
17. Vitousek PM, Mooney HA, Lubchenco J, Melillo JM (1997) Human domination of Earth's ecosystems. Science 277:494-499
18. Weir BS (1996) Genetic data analysis II. Sinauer Associates Inc. Sunderland, MA.