A novel method for the rapid and prospective identification of Beijing Mycobacterium tuberculosis strains by high-resolution melting analysis

Clinical Microbiology and Infection

Volumn 17, Issue 3, 2011, Pages 349-357

  Alonso, M ^a,b   Navarro, Y ^a   Barletta, F ^c   Martinez Lirola M ^d   Gotuzzo, E ^c   Bouza, E ^a,b   de Viedma, D García ^a,b  

^a HOSPITAL GENERAL UNIVERSITARIO GREGORIO MARAÑÓN   (Spain)

^b INSTITUTO DE SALUD CARLOS III   (Spain)

^c UNIVERSIDAD PERUANA CAYETANO HEREDIA   (Peru)

^d HOSPITAL TORRECÁRDENAS   (Spain)

Author keywords

Beijing; High resolution melting analysis; Tuberculosis

Indexed keywords

ANALYTIC METHOD; ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BEIJING MYCOBACTERIUM TUBERCULOSIS; CELL LINEAGE; DNA PROBE; GENE; GENETIC LINKAGE; GENOTYPE; HIGH RESOLUTION MELTING ANALYSIS; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; RELIABILITY; SENSITIVITY ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM;

MYCOBACTERIUM TUBERCULOSIS;

EID: 79751469866     PISSN: 1198743X     EISSN: 14690691     Source Type: Journal    
DOI: 10.1111/j.1469-0691.2010.03234.x     Document Type: Article

References (57)

1. Gagneux S, DeRiemer K, Van T et al. Variable host-pathogen compatibility in Mycobacterium tuberculosis. Proc Natl Acad Sci USA 2006; 103: 2869-2873.
2. Frieden TR, Sterling TR, Munsiff SS, Watt CJ, Dye C. Tuberculosis. Lancet 2003; 362: 887-899.
3. Dormans J, Burger M, Aguilar D et al. Correlation of virulence, lung pathology, bacterial load and delayed type hypersensitivity responses after infection with different Mycobacterium tuberculosis genotypes in a BALB/c mouse model. Clin Exp Immunol 2004; 137: 460-468.
4. European concerted action of new generation genetics markers techniques for the epidemiology control of tuberculosis. Beijing/W genotype Mycobacterium tuberculosis and drug resistance. Emerg Infect Dis 2006; 12: 736-743.
5. Samper S, Iglesias MJ, Rabanaque MJ et al. Systematic molecular characterization of multidrug-resistant Mycobacterium tuberculosis complex isolates from Spain. J Clin Microbiol 2005; 43: 1220-1227.
6. Bifani PJ, Mathema B, Kurepina NE, Kreiswirth BN. Global dissemination of the Mycobacterium tuberculosis W-Beijing family strains. Trends Microbiol 2002; 10: 45-52.
7. Glynn JR, Whiteley J, Bifani PJ, Kremer K, van Soolingen D. Worldwide occurrence of Beijing/W strains of Mycobacterium tuberculosis: a systematic review. Emerg Infect Dis 2002; 8: 843-849.
8. WHO. Anti-tuberculosis drug resistance in the worldFourth global report. WHO/HTM/TB/2008.394. Geneva. WHO; 2008.
9. Kruuner A, Hoffner SE, Sillastu H et al. Spread of drug-resistant pulmonary tuberculosis in Estonia. J Clin Microbiol 2001; 39: 3339-3345.
10. Frieden TR, Sterling T, Pablos-Mendez A et al. The emergence of drug-resistant tuberculosis in New York City. N Engl J Med 1993; 328: 521-526.
11. Lopez B, Aguilar D, Orozco H et al. A marked difference in pathogenesis and immune response induced by different Mycobacterium tuberculosis genotypes. Clin Exp Immunol 2003; 133: 30-37.
12. Theus SA, Cave MD, Eisenach KD. Intracellular macrophage growth rates and cytokine profiles of Mycobacterium tuberculosis strains with different transmission dynamics. J Infect Dis 2005; 191: 453-460.
13. Reed MB, Domenech P, Manca C et al. A glycolipid of hypervirulent tuberculosis strains that inhibits the innate immune response. Nature 2004; 431: 84-87.
14. Manca C, Reed MB, Freeman S et al. Differential monocyte activation underlies strain-specific Mycobacterium tuberculosis pathogenesis. Infect Immun 2004; 72: 5511-5514.
15. Caws M, Thwaites G, Dunstan S et al. The influence of host and bacterial genotype on the development of disseminated disease with Mycobacterium tuberculosis. PLoS Pathog 2008; 4: e1000034.
16. Kong Y, Cave MD, Zhang L et al. Association between Mycobacterium tuberculosis Beijing/W lineage strain infection and extrathoracic tuberculosis: insights from epidemiologic and clinical characterization of the three principal genetic groups of M. tuberculosis clinical isolates. J Clin Microbiol 2007; 45: 409-414.
17. Kremer K, van Soolingen D, Frothingham R et al. Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility. J Clin Microbiol 1999; 37: 2607-2618.
18. Kremer K, Glynn JR, Lillebaek T et al. Definition of the Beijing/W lineage of Mycobacterium tuberculosis on the basis of genetic markers. J Clin Microbiol 2004; 42: 4040-4049.
19. Goyal M, Saunders NA, van Embden JD, Young DB, Shaw RJ. Differentiation of Mycobacterium tuberculosis isolates by spoligotyping and IS6110 restriction fragment length polymorphism. J Clin Microbiol 1997; 35: 647-651.
20. Constant P, Perez E, Malaga W et al. Role of the pks15/1 gene in the biosynthesis of phenolglycolipids in the Mycobacterium tuberculosis complex. Evidence that all strains synthesize glycosylated p-hydroxybenzoic methyl esters and that strains devoid of phenolglycolipids harbor a frameshift mutation in the pks15/1 gene. J Biol Chem 2002; 277: 38148-38158.
21. Tsolaki AG, Gagneux S, Pym AS et al. Genomic deletions classify the Beijing/W strains as a distinct genetic lineage of Mycobacterium tuberculosis. J Clin Microbiol 2005; 43: 3185-3191.
22. Chakravorty S, Aladegbami B, Motiwala AS et al. Rifampin resistance, Beijing-W clade-single nucleotide polymorphism cluster group 2 phylogeny, and the Rv2629 191-C allele in Mycobacterium tuberculosis strains. J Clin Microbiol 2008; 46: 2555-2560.
23. Homolka S, Koser C, Archer J, Rusch-Gerdes S, Niemann S. Single-nucleotide polymorphisms in Rv2629 are specific for Mycobacterium tuberculosis genotypes Beijing and Ghana but not associated with rifampin resistance. J Clin Microbiol 2009; 47: 223-226.
24. Louw GE, Warren RM, van Helden PD, Victor TC. Rv2629 191A/C nucleotide change is not associated with rifampicin resistance in Mycobacterium tuberculosis. Clin Chem Lab Med 2009; 47: 500-501.
25. Alonso M, Borrell S, Lirola MM, Bouza E, García de Viedma D. A proposal for applying molecular markers as an aid to identifying potential cases of imported tuberculosis in immigrants. Tuberculosis (Edinburgh) 2008; 88: 641-647.
26. Nolte FS. Mycobacterium. Manual of Clinical Microbiology, 6th edn. Washington, DC: ASM Press, 1995.
27. Kubica GP, Dye WE, Cohn ML, Middlebrook G. Sputum digestion and decontamination with N-acetyl-L-cysteine-sodium hydroxide for culture of mycobacteria. Am Rev Respir Dis 1963; 87: 775-779.
28. Brudey K, Driscoll JR, Rigouts L et al. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiol 2006; 6: 23.
29. Hawkey PM, Smith EG, Evans JT et al. Mycobacterial interspersed repetitive unit typing of Mycobacterium tuberculosis compared to IS6110-based restriction fragment length polymorphism analysis for investigation of apparently clustered cases of tuberculosis. J Clin Microbiol 2003; 41: 3514-3520.
30. Hanekom M, van der Spuy GD, Gey van Pittius NC et al. Discordance between mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing and IS6110 restriction fragment length polymorphism genotyping for analysis of Mycobacterium tuberculosis Beijing strains in a setting of high incidence of tuberculosis. J Clin Microbiol 2008; 46: 3338-3345.
31. Iwamoto T, Yoshida S, Suzuki K et al. Hypervariable loci that enhance the discriminatory ability of newly proposed 15-loci and 24-loci variable-number tandem repeat typing method on Mycobacterium tuberculosis strains predominated by the Beijing family. FEMS Microbiol Lett 2007; 270: 67-74.
32. Chaiprasert A, Yorsangsukkamol J, Prammananan T et al. Intact pks15/1 in non-W-Beijing Mycobacterium tuberculosis isolates. Emerg Infect Dis 2006; 12: 772-774.
33. Jiang X, Zhang Y, Zhang W et al. Identification of unique genetic markers in Rv0927c among Mycobacterium tuberculosis W-Beijing strains. Microbes Infect 2007; 9: 241-246.
34. Jiang X, Lu C, Gao F et al. A rapid and simple method for identifying Mycobacterium tuberculosis W-Beijing strains based on detection of a unique mutation in Rv0927c by PCR-SSCP. Microbes Infect 2009; 11: 419-423.
35. Wang Q, Yue J, Zhang L et al. A newly identified 191A/C mutation in the Rv2629 gene that was significantly associated with rifampin resistance in Mycobacterium tuberculosis. J Proteome Res 2007; 6: 4564-4571.
36. Djelouadji Z, Henry M, Bachtarzi A et al. Pyrosequencing identification of Mycobacterium tuberculosis W-Beijing. BMC Res Notes 2009; 2: 239.
37. Erali M, Voelkerding KV, Wittwer CT. High resolution melting applications for clinical laboratory medicine. Exp Mol Pathol 2008; 85: 50-58.
38. Cheng JC, Huang CL, Lin CC et al. Rapid detection and identification of clinically important bacteria by high-resolution melting analysis after broad-range ribosomal RNA real-time PCR. Clin Chem 2006; 52: 1997-2004.
39. Laurie AD, Smith MP, George PM. Detection of factor VIII gene mutations by high-resolution melting analysis. Clin Chem 2007; 53: 2211-2214.
40. Takano EA, Mitchell G, Fox SB, Dobrovic A. Rapid detection of carriers with BRCA1 and BRCA2 mutations using high resolution melting analysis. BMC Cancer 2008; 8: 59.
41. Robertson T, Bibby S, O'Rourke D et al. Characterization of Chlamydiaceae species using PCR and high resolution melt curve analysis of the 16S rRNA gene. J Appl Microbiol 2009; 107: 2017-2028.
42. Fortini D, Ciammaruconi A, De Santis R et al. Optimization of high-resolution melting analysis for low-cost and rapid screening of allelic variants of Bacillus anthracis by multiple-locus variable-number tandem repeat analysis. Clin Chem 2007; 53: 1377-1380.
43. Lin JH, Tseng CP, Chen YJ et al. Rapid differentiation of influenza A virus subtypes and genetic screening for virus variants by high-resolution melting analysis. J Clin Microbiol 2008; 46: 1090-1097.
44. Stevens MP, Garland SM, Tabrizi SN. Development and validation of a real-time PCR assay specifically detecting human papillomavirus 52 using the Roche LightCycler 480 system. J Virol Methods 2008; 147: 290-296.
45. Slinger R, Bellfoy D, Desjardins M, Chan F. High-resolution melting assay for the detection of gyrA mutations causing quinolone resistance in Salmonella enterica serovars Typhi and Paratyphi. Diagn Microbiol Infect Dis 2007; 57: 455-458.
46. Pietzka AT, Indra A, Stoger A et al. Rapid identification of multidrug-resistant Mycobacterium tuberculosis isolates by rpoB gene scanning using high-resolution melting curve PCR analysis. J Antimicrob Chemother 2009; 63: 1121-1127.
47. García de Viedma D, Chaves F, Inigo J. New route of importation of Mycobacterium tuberculosis Beijing genotype. Emerg Infect Dis 2006; 12: 169-170.
48. Codina G, Vidal R, Martín-Casabona N, Miravitlles M, Martín C. Multidrug-resistant tuberculosis caused by 'W'-related strains in three immunocompetent foreign-born patients. Int J Tuberc Lung Dis 1999; 3: 82-84.
49. Ritacco V, Lopez B, Cafrune PI et al. Mycobacterium tuberculosis strains of the Beijing genotype are rarely observed in tuberculosis patients in South America. Mem Inst Oswaldo Cruz 2008; 103: 489-492.
50. Dalla Costa ER, Ribeiro MO, Silva MS et al. Correlations of mutations in katG, oxyR-ahpC and inhA genes and in vitro susceptibility in Mycobacterium tuberculosis clinical strains segregated by spoligotype families from tuberculosis prevalent countries in South America. BMC Microbiol 2009; 9: 39.
51. Morcillo N, Di Giulio B, Chirico C et al. First description of Mycobacterium tuberculosis Beijing genotype in Argentina. Rev Argent Microbiol 2005; 37: 92-95.
52. Candia N, Lopez B, Zozio T et al. First insight into Mycobacterium tuberculosis genetic diversity in Paraguay. BMC Microbiol 2007; 7: 75.
53. Aristimuno L, Armengol R, Cebollada A et al. Molecular characterisation of Mycobacterium tuberculosis isolates in the First National Survey of Anti-tuberculosis Drug Resistance from Venezuela. BMC Microbiol 2006; 6: 90.
54. Warren RM, Victor TC, Streicher EM et al. Patients with active tuberculosis often have different strains in the same sputum specimen. Am J Respir Crit Care Med 2004; 169: 610-614.
55. Hillemann D, Warren R, Kubica T, Rusch-Gerdes S, Niemann S. Rapid detection of Mycobacterium tuberculosis Beijing genotype strains by real-time PCR. J Clin Microbiol 2006; 44: 302-306.
56. Sun JR, Lee SY, Dou HY, Lu JJ. Using a multiplex polymerase chain reaction for the identification of Beijing strains of Mycobacterium tuberculosis. Eur J Clin Microbiol Infect Dis 2009; 28: 105-107.
57. Palais RA, Liew MA, Wittwer CT. Quantitative heteroduplex analysis for single nucleotide polymorphism genotyping. Anal Biochem 2005; 346: 167-175.