-
1
-
-
0023952130
-
DNA polymerase III holoenzyme of Escherichia coli III distinctive processive polymerases reconstituted from purified subunits
-
Maki S., Kornberg A. DNA polymerase III holoenzyme of Escherichia coli III distinctive processive polymerases reconstituted from purified subunits. J. Biol. Chem. 1988, 263:6561-6569.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 6561-6569
-
-
Maki, S.1
Kornberg, A.2
-
2
-
-
22244478079
-
Cellular DNA replicases: components and dynamics at the replication fork
-
Johnson A., O'Donnell M. Cellular DNA replicases: components and dynamics at the replication fork. Ann. Rev. Biochem. 2005, 74:283-315.
-
(2005)
Ann. Rev. Biochem.
, vol.74
, pp. 283-315
-
-
Johnson, A.1
O'Donnell, M.2
-
3
-
-
0029026635
-
Dna polymerase III holoenzyme: structure and function of a chromosomal replicating machine
-
Kelman Z., O'Donnell M. Dna polymerase III holoenzyme: structure and function of a chromosomal replicating machine. Annu. Rev. Biochem. 1995, 64:171-200.
-
(1995)
Annu. Rev. Biochem.
, vol.64
, pp. 171-200
-
-
Kelman, Z.1
O'Donnell, M.2
-
4
-
-
0018786252
-
DNA polymerase III of Escherichia coli purification and identification of subunits
-
McHenry C.S., Crow W. DNA polymerase III of Escherichia coli purification and identification of subunits. J. Biol. Chem. 1979, 254:1748-1753.
-
(1979)
J. Biol. Chem.
, vol.254
, pp. 1748-1753
-
-
McHenry, C.S.1
Crow, W.2
-
5
-
-
0031892179
-
Role of the core DNA polymerase III subunits at the replication fork. Alpha is the only subunit required for processive replication
-
Marians K.J., Hiasa H., Kim D.R., McHenry C.S. Role of the core DNA polymerase III subunits at the replication fork. Alpha is the only subunit required for processive replication. J. Biol. Chem. 1998, 273:2452-2457.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 2452-2457
-
-
Marians, K.J.1
Hiasa, H.2
Kim, D.R.3
McHenry, C.S.4
-
6
-
-
0010219240
-
A separate editing exonuclease for DNA replication: the epsilon subunit of Escherichia coli DNA polymerase III holoenzyme
-
Scheuermann R.H., Echols H. A separate editing exonuclease for DNA replication: the epsilon subunit of Escherichia coli DNA polymerase III holoenzyme. Proc. Natl. Acad. Sci. USA 1984, 81:7747-7751.
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 7747-7751
-
-
Scheuermann, R.H.1
Echols, H.2
-
7
-
-
0037161144
-
Hydrolysis of the 5'-p-nitrophenyl ester of TMP by the proofreading exonuclease (epsilon) subunit of Escherichia coli DNA polymerase III
-
Hamdan S., Bulloch E.M., Thompson P.R., Beck J.L., Yang J.Y., Crowther J.A., Lilley P.E., Carr P.D., Ollis D.L., Brown S.E., Dixon N.E. Hydrolysis of the 5'-p-nitrophenyl ester of TMP by the proofreading exonuclease (epsilon) subunit of Escherichia coli DNA polymerase III. Biochemistry 2002, 41:5266-5275.
-
(2002)
Biochemistry
, vol.41
, pp. 5266-5275
-
-
Hamdan, S.1
Bulloch, E.M.2
Thompson, P.R.3
Beck, J.L.4
Yang, J.Y.5
Crowther, J.A.6
Lilley, P.E.7
Carr, P.D.8
Ollis, D.L.9
Brown, S.E.10
Dixon, N.E.11
-
8
-
-
1942539340
-
The theta subunit of Escherichia coli DNA polymerase III: a role in stabilizing the epsilon proofreading subunit
-
Taft-Benz S.A., Schaaper R.M. The theta subunit of Escherichia coli DNA polymerase III: a role in stabilizing the epsilon proofreading subunit. J. Bacteriol. 2004, 186:2774-2780.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 2774-2780
-
-
Taft-Benz, S.A.1
Schaaper, R.M.2
-
9
-
-
0025885734
-
Analysis of the ATPase subassembly which initiates processive DNA synthesis by DNA polymerase III holoenzyme
-
Onrust R., Stukenberg P.T., O'Donnell M. Analysis of the ATPase subassembly which initiates processive DNA synthesis by DNA polymerase III holoenzyme. J. Biol. Chem. 1991, 266:21681-21686.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 21681-21686
-
-
Onrust, R.1
Stukenberg, P.T.2
O'Donnell, M.3
-
10
-
-
0036171550
-
The processivity factor beta controls DNA polymerase IV traffic during spontaneous mutagenesis and translesion synthesis in vivo
-
Lenne-Samuel N., Wagner J., Etienne H., Fuchs R.P. The processivity factor beta controls DNA polymerase IV traffic during spontaneous mutagenesis and translesion synthesis in vivo. EMBO Rep. 2002, 3:45-49.
-
(2002)
EMBO Rep.
, vol.3
, pp. 45-49
-
-
Lenne-Samuel, N.1
Wagner, J.2
Etienne, H.3
Fuchs, R.P.4
-
11
-
-
0037117539
-
Posttranslational modification of the umuD-encoded subunit of Escherichia coli DNA polymerase V regulates its interactions with the beta processivity clamp
-
Sutton M.D., Narumi I., Walker G.C. Posttranslational modification of the umuD-encoded subunit of Escherichia coli DNA polymerase V regulates its interactions with the beta processivity clamp. Proc. Natl. Acad. Sci. USA 2002, 99:5307-5312.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 5307-5312
-
-
Sutton, M.D.1
Narumi, I.2
Walker, G.C.3
-
12
-
-
2442504231
-
Interaction of the sliding clamp beta-subunit and Hda, a DnaA-related protein
-
Kurz M., Dalrymple B., Wijffels G., Kongsuwan K. Interaction of the sliding clamp beta-subunit and Hda, a DnaA-related protein. J. Bacteriol. 2004, 186:3508-3515.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 3508-3515
-
-
Kurz, M.1
Dalrymple, B.2
Wijffels, G.3
Kongsuwan, K.4
-
13
-
-
0035902496
-
Interaction of the beta sliding clamp with MutS, ligase, and DNA polymerase I
-
Lopez de Saro F.J., O'Donnell M. Interaction of the beta sliding clamp with MutS, ligase, and DNA polymerase I. Proc. Natl. Acad. Sci. USA 2001, 98:8376-8380.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 8376-8380
-
-
Lopez de Saro, F.J.1
O'Donnell, M.2
-
14
-
-
0035949599
-
A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems
-
Dalrymple B.P., Kongsuwan K., Wijffels G., Dixon N.E., Jennings P.A. A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems. Proc. Natl. Acad. Sci. USA 2001, 98:11627-11632.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11627-11632
-
-
Dalrymple, B.P.1
Kongsuwan, K.2
Wijffels, G.3
Dixon, N.E.4
Jennings, P.A.5
-
15
-
-
0035943399
-
Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III
-
Jeruzalmi D., Yurieva O., Zhao Y., Young M., Stewart J., Hingorani M., O'Donnell M., Kuriyan J. Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III. Cell 2001, 106:417-428.
-
(2001)
Cell
, vol.106
, pp. 417-428
-
-
Jeruzalmi, D.1
Yurieva, O.2
Zhao, Y.3
Young, M.4
Stewart, J.5
Hingorani, M.6
O'Donnell, M.7
Kuriyan, J.8
-
17
-
-
23844559275
-
Optimizing protein crystal growth through dynamic seeding
-
Zhu D.Y., Zhu Y.Q., Xiang Y., Wang D.C. Optimizing protein crystal growth through dynamic seeding. Acta Crystallogr. D Biol. Crystallogr. 2005, 61:772-775.
-
(2005)
Acta Crystallogr. D Biol. Crystallogr.
, vol.61
, pp. 772-775
-
-
Zhu, D.Y.1
Zhu, Y.Q.2
Xiang, Y.3
Wang, D.C.4
-
18
-
-
0031059866
-
-
Processing of X-ray diffraction data collected in oscillation mode, methods in enzymology, C.W. Carter, Jr., R. M. Sweet, (Eds.), Macromolecular Crystallography, part A,
-
Z. Otwinosku, A.W. Minor, Processing of X-ray diffraction data collected in oscillation mode, methods in enzymology, C.W. Carter, Jr., R. M. Sweet, (Eds.), vol. 276: Macromolecular Crystallography, part A, 1997, pp. 307-326.
-
(1997)
, vol.276
, pp. 307-326
-
-
Otwinosku, Z.1
Minor, A.W.2
-
19
-
-
34447508216
-
Phaser crystallographic software
-
McCoy A.J., Grosse-Kunstleve R.W., Adams P.D., Winn M.D., Storoni L.C., Read R.J. Phaser crystallographic software. J. Appl. Crystallogr. 2007, 40:658-674.
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
20
-
-
0026717535
-
Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp
-
Kong X.P., Onrust R., O'Donnell M., Kuriyan J. Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp. Cell 1992, 69:425-437.
-
(1992)
Cell
, vol.69
, pp. 425-437
-
-
Kong, X.P.1
Onrust, R.2
O'Donnell, M.3
Kuriyan, J.4
-
22
-
-
16644364842
-
REFMAC5 dictionary: organization of prior chemical knowledge and guidelines for its use
-
Vagin A.A., Steiner R.A., Lebedev A.A., Potterton L., McNicholas S., Long F., Murshudov G.N. REFMAC5 dictionary: organization of prior chemical knowledge and guidelines for its use. Acta Crystallogr. D Biol. Crystallogr. 2004, 60:2184-2195.
-
(2004)
Acta Crystallogr. D Biol. Crystallogr.
, vol.60
, pp. 2184-2195
-
-
Vagin, A.A.1
Steiner, R.A.2
Lebedev, A.A.3
Potterton, L.4
McNicholas, S.5
Long, F.6
Murshudov, G.N.7
-
23
-
-
0028103275
-
The CCP4 suite: programs for protein crystallography
-
Collaborative Computational Project N.
-
Collaborative Computational Project N. The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 1994, 50:760-763.
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
24
-
-
76449098262
-
PHENIX: a comprehensive Python-based system for macromolecular structure solution
-
Adams P.D., Afonine P.V., Bunkoczi G., Chen V.B., Davis I.W., Echols N., Headd J.J., Hung L.W., Kapral G.J., Grosse-Kunstleve R.W., McCoy A.J., Moriarty N.W., Oeffner R., Read R.J., Richardson D.C., Richardson J.S., Terwilliger T.C., Zwart P.H. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 2010, 66:213-221.
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
25
-
-
33244454780
-
Crystal structure of a DNA polymerase sliding clamp from a Gram-positive bacterium
-
Argiriadi M., Goedken E., Bruck I., O'Donnell M., Kuriyan J. Crystal structure of a DNA polymerase sliding clamp from a Gram-positive bacterium. BMC Struct. Biol. 2006, 6:2.
-
(2006)
BMC Struct. Biol.
, vol.6
, pp. 2
-
-
Argiriadi, M.1
Goedken, E.2
Bruck, I.3
O'Donnell, M.4
Kuriyan, J.5
-
26
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilm A., Lopez R., Thompson J.D., Gibson T.J., Higgins D.G. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
27
-
-
0035179213
-
Intricacies in ATP-dependent clamp loading: variations across replication systems
-
Trakselis M.A., Benkovic S.J. Intricacies in ATP-dependent clamp loading: variations across replication systems. Structure 2001, 9:999-1004.
-
(2001)
Structure
, vol.9
, pp. 999-1004
-
-
Trakselis, M.A.1
Benkovic, S.J.2
-
28
-
-
0030070111
-
A molecular switch in a replication machine defined by an internal competition for protein rings
-
Naktinis V., Turner J., O'Donnell M. A molecular switch in a replication machine defined by an internal competition for protein rings. Cell 1996, 84:137-145.
-
(1996)
Cell
, vol.84
, pp. 137-145
-
-
Naktinis, V.1
Turner, J.2
O'Donnell, M.3
-
29
-
-
0022344806
-
The polymerase subunit of DNA polymerase III of Escherichia coli I amplification of the dnaE gene product and polymerase activity of the alpha subunit
-
Maki H., Horiuchi T., Kornberg A. The polymerase subunit of DNA polymerase III of Escherichia coli I amplification of the dnaE gene product and polymerase activity of the alpha subunit. J. Biol. Chem. 1985, 260:12982-12986.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 12982-12986
-
-
Maki, H.1
Horiuchi, T.2
Kornberg, A.3
-
31
-
-
20444420519
-
A bipartite polymerase-processivity factor interaction: only the internal beta binding site of the alpha subunit is required for processive replication by the DNA polymerase III holoenzyme
-
Dohrmann P.R., McHenry C.S. A bipartite polymerase-processivity factor interaction: only the internal beta binding site of the alpha subunit is required for processive replication by the DNA polymerase III holoenzyme. J. Mol. Biol. 2005, 350:228-239.
-
(2005)
J. Mol. Biol.
, vol.350
, pp. 228-239
-
-
Dohrmann, P.R.1
McHenry, C.S.2
-
32
-
-
33748146483
-
Crystal structure of the catalytic alpha subunit of E. coli replicative DNA polymerase III
-
Lamers M.H., Georgescu R.E., Lee S.G., O'Donnell M., Kuriyan J. Crystal structure of the catalytic alpha subunit of E. coli replicative DNA polymerase III. Cell 2006, 126:881-892.
-
(2006)
Cell
, vol.126
, pp. 881-892
-
-
Lamers, M.H.1
Georgescu, R.E.2
Lee, S.G.3
O'Donnell, M.4
Kuriyan, J.5
-
33
-
-
49649087259
-
Structure of a small-molecule inhibitor of a DNA polymerase sliding clamp
-
Georgescu R.E., Yurieva O., Kim S.S., Kuriyan J., Kong X.P., O'Donnell M. Structure of a small-molecule inhibitor of a DNA polymerase sliding clamp. Proc. Natl. Acad. Sci. USA 2008, 105:11116-11121.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 11116-11121
-
-
Georgescu, R.E.1
Yurieva, O.2
Kim, S.S.3
Kuriyan, J.4
Kong, X.P.5
O'Donnell, M.6
-
34
-
-
79651473990
-
-
The PyMOL Molecular Graphics System, Version 1.3r1,
-
Schrodinger, LLC, The PyMOL Molecular Graphics System, Version 1.3r1, 2010.
-
(2010)
-
-
Schrodinger, L.L.C.1
|