A first assessment of the genetic diversity of Mycobacterium tuberculosis complex in Cambodia

BMC Infectious Diseases

Volumn 11, Issue , 2011, Pages

  Zhang, Jian ^a   Heng, Seiha ^b   Le Moullec, Stéphanie ^a   Refregier, Guislaine ^a   Gicquel, Brigitte ^c   Sola, Christophe ^a,c   Guillard, Bertrand ^b  

^a INSTITUTE FOR INTEGRATIVE BIOLOGY OF THE CELL I2BC   (France)

^b INSTITUT PASTEUR DU CAMBODGE   (Cambodia)

^c INSTITUT PASTEUR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AGED; ARTICLE; BACTERIAL GENETICS; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CAMBODIA; CHILD; CONTROLLED STUDY; FEMALE; GENE CLUSTER; GENE LOCUS; GENETIC VARIABILITY; HUMAN; INTERSPERSED REPEAT; MALE; MOLECULAR PHYLOGENY; MULTIDRUG RESISTANCE; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; SCHOOL CHILD; VARIABLE NUMBER OF TANDEM REPEAT; ADOLESCENT; ADULT; CLASSIFICATION; CLUSTER ANALYSIS; GENETICS; GENOTYPE; ISOLATION AND PURIFICATION; MICROBIOLOGY; MIDDLE AGED; MOLECULAR TYPING; TUBERCULOSIS;

ADOLESCENT; ADULT; AGED; BACTERIAL TYPING TECHNIQUES; CAMBODIA; CHILD; CLUSTER ANALYSIS; FEMALE; GENETIC VARIATION; GENOTYPE; HUMANS; MALE; MIDDLE AGED; MOLECULAR TYPING; MYCOBACTERIUM TUBERCULOSIS; TUBERCULOSIS; YOUNG ADULT;

EID: 79551639986     PISSN: None     EISSN: 14712334     Source Type: Journal    
DOI: 10.1186/1471-2334-11-42     Document Type: Article

References (38)

1. WHO Global Tuberculosis Control: Surveillance, Planning, Financing. 2008, WHO, Geneva, Switzerland, WHO.
2. WHO Global Tuberculosis Control: Surveillance, Planning, Financing. 2006, WHO, Geneva, Switzerland, WHO.
3. USAID Infectious Diseases. accessed January 29 th 2011., http://www.usaid.gov/our_work/global_health/id/tuberculosis/countries/asia/cambodia_profile.html
4. Sar B, Keo C, Leng C, Saman M, Min DC, Chan S, Monchy D, Sarthou JL. Anti-tuberculosis drug resistance and HIV co-infection in Phnom Penh, Cambodia. Southeast Asian J Trop Med Public Health 2009, 40(1):104-107.
5. Smittipat N, Billamas P, Palittapongarnpim M, Thong-On A, Temu MM, Thanakijcharoen P, Karnkawinpong O, Palittapongarnpim P. Polymorphism of variable-number tandem repeats at multiple loci in Mycobacterium tuberculosis. J Clin Microbiol 2005, 43(10):5034-5043. 10.1128/JCM.43.10.5034-5043.2005, 1248453, 16207958.
6. Buu TN, Huyen MN, Lan NT, Quy HT, Hen NV, Zignol M, Borgdorff MW, Cobelens FG, van Soolingen D. The Beijing genotype is associated with young age and multidrug-resistant tuberculosis in rural Vietnam. Int J Tuberc Lung Dis 2009, 13(7):900-906.
7. Phyu S, Jureen R, Ti T, Dahle UR, Grewal HM. Heterogeneity of Mycobacterium tuberculosis isolates in Yangon, Myanmar. J Clin Microbiol 2003, 41(10):4907-4908. 10.1128/JCM.41.10.4907-4908.2003, 254380, 14532259.
8. Wells CD, Cegielski JP, Nelson LJ, Laserson KF, Holtz TH, Finlay A, Castro KG, Weyer K. HIV infection and multidrug-resistant tuberculosis: the perfect storm. J Infect Dis 2007, 196(Suppl 1):S86-107. 10.1086/518665, 17624830.
9. Cheunoy W, Haile M, Chaiprasert A, Prammananan T, Cristea-Fernstrom M, Vondracek M, Chryssanthou E, Hoffner S, Petrini B. Drug resistance and genotypic analysis of Mycobacterium tuberculosis strains from Thai tuberculosis patients. Apmis 2009, 117(4):286-290. 10.1111/j.1600-0463.2009.02438.x, 19343824.
10. Brudey K, Driscoll J, Rigouts L, Prodinger WM, Gori A, Al-Hajoj SAM, Allix C, Aristimuno L, Arora J, Baumanis V, et al. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, Population Genetics, and Epidemiology. BMC Microbiol 2006, 6(6):23. 10.1186/1471-2180-6-23, 1468417, 16519816.
11. Singh UB, Suresh N, Vijaya Bhanu N, Arora J, Pant H, Sinha S, Aggarwal RC, Singh S, Pande JN, Sola C, et al. Predominant Tuberculosis Spoligotypes, Delhi, India. Emerg Infect Dis 2004, 10(6):1138-1142.
12. Allix-Beguec C, Harmsen D, Weniger T, Supply P, Niemann S. Evaluation and user-strategy of MIRU-VNTRplus, a multifunctional database for on-line analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates. J Clin Microbiol 2008, 46(8):2692-9. Epub 2008 Jun 11, 10.1128/JCM.00540-08, 2519508, 18550737.
13. Helal ZH, Ashour MS, Eissa SA, Abd-Elatef G, Zozio T, Babapoor S, Rastogi N, Khan MI. Unexpectedly high proportion of ancestral Manu genotype Mycobacterium tuberculosis strains cultured from tuberculosis patients in Egypt. J Clin Microbiol 2009, 47(9):2794-2801. 10.1128/JCM.00360-09, 2738058, 19553569.
14. Bhanu NV, van Soolingen D, van Embden JD, Dar L, Pandey RM, Seth P. Predominance of a novel Mycobacterium tuberculosis genotype in the Delhi region of India. Tuberculosis (Edinb) 2002, 82(2-3):105-112. 10.1054/tube.2002.0332, 12356462.
15. Banu S, Gordon SV, Palmer S, Islam R, Ahmed S, Alam KM, Cole ST, Brosch R. Genotypic Analysis of Mycobacterium tuberculosis in Bangladesh and Prevalence of the Beijing Strain. J Clin Microbiol 2004, 42(2):674-682. 10.1128/JCM.42.2.674-682.2004, 344461, 14766836.
16. Rahim Z, Zaman K, van der Zanden AG, Mollers MJ, van Soolingen D, Raqib R, Zaman K, Begum V, Rigouts L, Portaels F, et al. Assessment of population structure and major circulating phylogeographical clades of Mycobacterium tuberculosis complex in Bangladesh suggests a high prevalence of a specific subclade of ancient M. tuberculosis genotypes. J Clin Microbiol 2007, 45(11):3791-3794. 10.1128/JCM.01247-07, 2168514, 17804653.
17. Gutierrez MC, Ahmed N, Willery E, Narayanan S, Hasnain SE, Chauhan DS, Katoch VM, Vincent V, Locht C, Supply P. Predominance of ancestral lineages of Mycobacterium tuberculosis in India. Emerg Infect Dis 2006, 12(9):1367-1374.
18. Johnson R, Warren R, Strauss O, Jordaan A, Falmer A, Beyers N, Schaaf H, Murray M, Cloete K, van Helden P, et al. An outbreak of drug-resistant tuberculosis caused by a Beijing strain in the western Cape, South Africa. Int J Tuberc Lung Dis 2006, 10(12):1412-1414.
19. Glynn JR, Whiteley J, Bifani PJ, Kremer K, Van Soolingen D. Worldwide Occurrence of Beijing/W Strains of Mycobacterium tuberculosis: A Systematic Review. Emerg Infect Dis 2002, 8(8):843-849. 2732522, 12141971.
20. Lan NTN, Lien HTK, Tung LB, Borgdorff MW, Kremer K, Van Soolingen D. Mycobacterium tuberculosis Beijing genotype and risk for treatment failure and relapse, Vietnam. Emerg Infect Dis 2003, 9:1633-1635. 3034339, 14720411.
21. Anh DD, Borgdorff MW, Van LN, Lan NT, van Gorkom T, Kremer K, van Soolingen D. Mycobacterium tuberculosis Beijing genotype emerging in Vietnam. Emerg Infect Dis 2000, 6(3):302-305. 10.3201/eid0603.000312, 2640863, 10827122.
22. Prammananan T, Cheunoy W, Taechamahapun D, Yorsangsukkamol J, Phunpruch S, Phdarat P, Leechawengwong M, Chaiprasert A. Distribution of rpoB mutations among multidrug-resistant Mycobacterium tuberculosis (MDRTB) strains from Thailand and development of a rapid method for mutation detection. Clin Microbiol Infect 2008, 14(5):446-453. 10.1111/j.1469-0691.2008.01951.x, 18294243.
23. David H, Levy-Frebault V, Thorel MF. Méthodes de laboratoire pour Mycobactériologie clinique. 1989, 1-87. Paris: Institut Pasteur.
24. Kamerbeek J, Schouls L, Kolk A, van Agterveld M, van Soolingen D, Kuijper S, Bunschoten A, Molhuizen H, Shaw R, Goyal M, et al. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol 1997, 35(4):907-914. 229700, 9157152.
25. Cowan LS, Diem L, Brake MC, Crawford JT. Transfer of a Mycobacterium tuberculosis genotyping method, Spoligotyping, from a reverse line-blot hybridization, membrane-based assay to the Luminex multianalyte profiling system. J Clin Microbiol 2004, 42(1):474-477. 10.1128/JCM.42.1.474-477.2004, 321738, 14715809.
26. Zhang J, Abadia E, Refregier G, Tafaj S, Boschiroli ML, Guillard B, Andremont A, Ruimy R, Sola C. Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay. J Med Microbiol 2009, 59:285-294. 10.1099/jmm.0.016949-0, 19959631.
27. van Embden JDA, van Gorkom T, Kremer K, Jansen R, van der Zeijst BAM, Schouls LM. Genetic variation and evolutionary origin of the Direct repeat locus of Mycobacterium tuberculosis complex bacteria. J Bacteriol 2000, 182:2393-2401. 10.1128/JB.182.9.2393-2401.2000, 111299, 10762237.
28. Brudey K, Gutierrez MC, Vincent V, Parsons LM, Salfinger M, Rastogi N, Sola C. Mycobacterium africanum Genotyping Using Novel Spacer Oligonucleotides in the Direct Repeat Locus. J Clin Microbiol 2004, 42(11):5053-5057. 10.1128/JCM.42.11.5053-5057.2004, 525283, 15528695.
29. Gagneux S, DeRiemer K, Van T, Kato-Maeda M, de Jong BC, Narayanan S, Nicol M, Niemann S, Kremer K, Gutierrez MC, et al. Variable host-pathogen compatibility in Mycobacterium tuberculosis. Proc Natl Acad Sci USA 2006, 103(8):2869-2873. 10.1073/pnas.0511240103, 1413851, 16477032.
30. Supply P, Allix C, Lesjean S, Cardoso-Oelemann M, Rusch-Gerdes S, Willery E, Savine E, de Haas P, van Deutekom H, Roring S, et al. Proposal for Standardization of Optimized Mycobacterial Interspersed Repetitive Unit-Variable-Number Tandem Repeat Typing of Mycobacterium tuberculosis. J Clin Microbiol 2006, 44(12):4498-4510. 10.1128/JCM.01392-06, 1698431, 17005759.
31. Frothingham R, Meeker-O'Connell WA. Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats. Microbiology 1998, 144(Pt 5):1189-1196. 10.1099/00221287-144-5-1189, 9611793.
32. Supply P, Mazars E, Lesjean S, Vincent V, Gicquel B, Locht C. Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome. Mol Microbiol 2000, 36:762-771. 10.1046/j.1365-2958.2000.01905.x, 10844663.
33. Supply P, Lesjean S, Savine E, Kremer K, van Soolingen D, Locht C. Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units. J Clin Microbiol 2001, 39:3563-3571. 10.1128/JCM.39.10.3563-3571.2001, 88389, 11574573.
34. Le Fleche P, Fabre M, Denoeud F, Koeck JL, Vergnaud G. High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing. BMC Microbiol 2002, 2(1):37. 10.1186/1471-2180-2-37, 140014, 12456266.
35. Skuce RA, McCorry TP, McCarroll JF, Roring SM, Scott AN, Brittain D, Hughes SL, Hewinson RG, Neill SD. Discrimination of Mycobacterium tuberculosis complex bacteria using novel VNTR-PCR targets. Microbiology 2002, 148(Pt 2):519-528.
36. Hunter PR, Gaston MA. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J ClinMicrobiol 1988, 26:2465-2466.
37. Small PM, Hopewell PC, Singh SP, Paz A, Parsonnet J, Ruston DC, Schecter GF, Daley CL, Schoolnik GK. The Epidemiology of Tuberculosis in San Francisco. N Engl J Med 1994, 330(24):1703-1709. 10.1056/NEJM199406163302402, 7910661.
38. SpolDB4. , http://www.pasteur-guadeloupe.fr/tb/bd_myco.html