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Single-letter abbreviations for the amino acid residues are as follows: A, Ala; C, Cys; D, Asp; E, Glu; F, Phe; G, Gly; H, His; I, Ile; K, Lys; L, Leu; M, Met; N, Asn; P, Pro; Q, Gln; R, Arg; S, Ser; T, Thr; V, Val; W, Trp; and Y, Tyr
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Single-letter abbreviations for the amino acid residues are as follows: A, Ala; C, Cys; D, Asp; E, Glu; F, Phe; G, Gly; H, His; I, Ile; K, Lys; L, Leu; M, Met; N, Asn; P, Pro; Q, Gln; R, Arg; S, Ser; T, Thr; V, Val; W, Trp; and Y, Tyr.
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note
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Wild-type lumazine synthases adopt multiple assembly forms depending on the choice of buffer and pH. Thus, in addition to T = 1 and T = 3 capsids with diameters around 16 and 30 nm, respectively, a larger structure consistent with either an expanded T = 3 or a T = 4 state has been observed by small angle x-ray scattering experiments (26). Under the conditions used in the current study, AaLS-neg assembles predominantly as conventional T = 3 capsids, whereas the evolved variant appears to favor the larger expanded form, both in the presence and absence of HIV protease. Although the observed shift in population can be ascribed to the increase in net negative charge on each monomer, detailed structural experiments will be needed to resolve whether it reflects a subtle subunit rearrangement or an increase in T number.
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note
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We thank B. Roschitzki at the Functional Genomics Center Zürich for collection of mass spectrometic data and assistance with data analysis; T. Ishikawa and M. Lucas at the Electron Microscopy Center of the ETH Zürich (EMEZ) for collecting the EM images and assistance with EM data analysis; H.-M. Fischer, F. Narberhaus, M. Neuenschwander, and F. Seebeck for contributive discussions; and P. Kast for careful reading of the manuscript. This work was supported in part by the Schweizerischer Nationalfond and the ETH Zürich. The supercharged GFP described in fig. S8 was obtained under a materials transfer agreement (MTA) with D. R. Liu at Harvard. An MTA would be required for sharing of materials used in the reported research.
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