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Volumn 134, Issue 4, 2011, Pages

Ab initio mass tensor molecular dynamics

Author keywords

[No Author keywords available]

Indexed keywords

AB INITIO; AB INITIO MOLECULAR DYNAMICS SIMULATION; ATOMIC MASS; COMPUTATIONAL EFFORT; COMPUTATIONAL OVERHEADS; EFFICIENT SAMPLING; FIRST DERIVATIVE; LIQUID WATER; MOLECULAR DYNAMICS METHODS; PHASE SPACES;

EID: 79551585811     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3543898     Document Type: Article
Times cited : (14)

References (71)
  • 1
    • 49449114817 scopus 로고    scopus 로고
    • 10.1126/science.1157834
    • M. L. Klein and W. Shinoda, Science 321, 798 (2008). 10.1126/science. 1157834
    • (2008) Science , vol.321 , pp. 798
    • Klein, M.L.1    Shinoda, W.2
  • 5
    • 48749148224 scopus 로고
    • 10.1016/0021-9991(83)90014-1
    • H. C. Andersen, J. Comput. Phys. 52, 24 (1983). 10.1016/0021-9991(83) 90014-1
    • (1983) J. Comput. Phys. , vol.52 , pp. 24
    • Andersen, H.C.1
  • 8
    • 4243606192 scopus 로고
    • 10.1103/PhysRevLett.55.2471
    • R. Car and M. Parrinello, Phys. Rev. Lett. 55, 2471 (1985). 10.1103/PhysRevLett.55.2471
    • (1985) Phys. Rev. Lett. , vol.55 , pp. 2471
    • Car, R.1    Parrinello, M.2
  • 12
    • 20844441640 scopus 로고    scopus 로고
    • An approximate but fast method to impose flexible distance constraints in molecular dynamics simulations
    • DOI 10.1063/1.1872792, 144106
    • M. Christen and W. F. van Gunsteren, J. Chem. Phys. 122, 144106 (2005). 10.1063/1.1872792 (Pubitemid 40858301)
    • (2005) Journal of Chemical Physics , vol.122 , Issue.14 , pp. 1-12
    • Christen, M.1    Van Gunsteren, W.F.2
  • 13
    • 33847717482 scopus 로고    scopus 로고
    • Influence of bond flexibility on the vapor-liquid phase equilibria of water
    • DOI 10.1063/1.2428302
    • G. Raabe and R. J. Sadus, J. Chem. Phys. 126, 044701 (2007). 10.1063/1.2428302 (Pubitemid 46372710)
    • (2007) Journal of Chemical Physics , vol.126 , Issue.4 , pp. 044701
    • Raabe, G.1    Sadus, R.J.2
  • 17
  • 20
    • 77956299697 scopus 로고    scopus 로고
    • 10.1063/1.3478526
    • D. Wei and F. Wang, J. Chem. Phys. 133, 084101 (2010). 10.1063/1.3478526
    • (2010) J. Chem. Phys. , vol.133 , pp. 084101
    • Wei, D.1    Wang, F.2
  • 21
    • 0037085922 scopus 로고    scopus 로고
    • On the use of the adiabatic molecular dynamics technique in the calculation of free energy profiles
    • DOI 10.1063/1.1448491
    • L. Rosso, P. Minry, Z. Zhu, and M. E. Tuckerman, J. Chem. Phys. 116, 4389 (2002). 10.1063/1.1448491 (Pubitemid 34405135)
    • (2002) Journal of Chemical Physics , vol.116 , Issue.11 , pp. 4389-4402
    • Rosso, L.1    Minary, P.2    Zhu, Z.3    Tuckerman, M.E.4
  • 22
    • 0037050603 scopus 로고    scopus 로고
    • Canonical adiabatic free energy sampling (CAFES): A novel method for the exploration of free energy surfaces
    • DOI 10.1021/jp013346k
    • J. VandeVondele and U. Rothlisberger, J. Phys. Chem. B 106, 203 (2002). 10.1021/jp013346k (Pubitemid 35263216)
    • (2002) Journal of Physical Chemistry B , vol.106 , Issue.1 , pp. 203-208
    • VandeVondele, J.1    Rothlisberger, U.2
  • 24
    • 26044480933 scopus 로고
    • 10.1016/0021-9991(75)90077-7
    • C. H. Bennett, J. Comput. Phys. 19, 267 (1975). 10.1016/0021-9991(75) 90077-7
    • (1975) J. Comput. Phys. , vol.19 , pp. 267
    • Bennett, C.H.1
  • 26
    • 4544314817 scopus 로고    scopus 로고
    • 10.1063/1.1780971
    • S. Melchionna, J. Chem. Phys. 121, 4534 (2004). 10.1063/1.1780971
    • (2004) J. Chem. Phys. , vol.121 , pp. 4534
    • Melchionna, S.1
  • 27
    • 33750535183 scopus 로고    scopus 로고
    • Numerical integration of projective Hamiltonian dynamics
    • DOI 10.1080/00268970600947197, PII M26M68010530K05J
    • S. Melchionna, Mol. Phys. 104, 3045 (2006). 10.1080/00268970600947197 (Pubitemid 44671560)
    • (2006) Molecular Physics , vol.104 , Issue.19 , pp. 3045-3049
    • Melchionna, S.1
  • 28
    • 49449089306 scopus 로고    scopus 로고
    • 10.1126/science.1158006
    • A. J. Stone, Science 321, 787 (2008). 10.1126/science.1158006
    • (2008) Science , vol.321 , pp. 787
    • Stone, A.J.1
  • 32
    • 79551586176 scopus 로고    scopus 로고
    • note
    • 0const., all frequencies would be equal.
  • 33
    • 79551589146 scopus 로고    scopus 로고
    • note
    • The simulation must be terminated if the lowest eigenvalue of Z(q) I corresponding to the new atomic configuration q is negative. Although it is possible to restart the simulation with a larger, there is a significant overhead associated with reinitialization. Therefore, we need to use a conservative value for to guarantee the positive definiteness of Z I throughout the simulations.
  • 38
    • 10644250257 scopus 로고
    • 10.1103/PhysRev.136.B864
    • P. Hohenberg and W. Kohn, Phys. Rev. 136, B864 (1964). 10.1103/PhysRev.136.B864
    • (1964) Phys. Rev. , vol.136 , pp. 864
    • Hohenberg, P.1    Kohn, W.2
  • 39
    • 0042113153 scopus 로고
    • 10.1103/PhysRev.140.A1133
    • W. Kohn and L. J. Sham, Phys. Rev. 140, A1133 (1965). 10.1103/PhysRev.140.A1133
    • (1965) Phys. Rev. , vol.140 , pp. 1133
    • Kohn, W.1    Sham, L.J.2
  • 43
    • 0009181011 scopus 로고    scopus 로고
    • 10.1103/PhysRevB.54.7602
    • E. Tsuchida and M. Tsukada, Phys. Rev. B 54, 7602 (1996). 10.1103/PhysRevB.54.7602
    • (1996) Phys. Rev. B , vol.54 , pp. 7602
    • Tsuchida, E.1    Tsukada, M.2
  • 45
    • 0000812184 scopus 로고
    • 10.1103/PhysRevB.51.11190
    • F. Gygi, Phys. Rev. B 51, 11190 (1995). 10.1103/PhysRevB.51.11190
    • (1995) Phys. Rev. , vol.51 , pp. 11190
    • Gygi, F.1
  • 49
    • 0036302546 scopus 로고    scopus 로고
    • 10.1143/JPSJ.71.197
    • E. Tsuchida, J. Phys. Soc. Jpn. 71, 197 (2002). 10.1143/JPSJ.71.197
    • (2002) J. Phys. Soc. Jpn. , vol.71 , pp. 197
    • Tsuchida, E.1
  • 55
    • 22944450867 scopus 로고    scopus 로고
    • Vibrational spectra from atomic fluctuations in dynamics simulations. I. Theory, limitations, and a sample application
    • DOI 10.1063/1.1822914
    • M. Schmitz and P. Tavan, J. Chem. Phys. 121, 12233 (2004). 10.1063/1.1822914 (Pubitemid 41041580)
    • (2004) Journal of Chemical Physics , vol.121 , Issue.24 , pp. 12233-12246
    • Schmitz, M.1    Tavan, P.2
  • 57
    • 31144444296 scopus 로고    scopus 로고
    • On the calculation of time correlation functions by potential scaling
    • DOI 10.1063/1.2159476, 034110
    • C. Xing and I. Andricioaei, J. Chem. Phys. 124, 034110 (2006). 10.1063/1.2159476 (Pubitemid 43133753)
    • (2006) Journal of Chemical Physics , vol.124 , Issue.3 , pp. 1-10
    • Xing, C.1    Andricioaei, I.2
  • 58
    • 0037159942 scopus 로고    scopus 로고
    • 10.1063/1.1516594
    • J.-L. Bretonnet, J. Chem. Phys. 117, 9370 (2002). 10.1063/1.1516594
    • (2002) J. Chem. Phys. , vol.117 , pp. 9370
    • Bretonnet, J.-L.1
  • 59
    • 34247357845 scopus 로고    scopus 로고
    • First-principles molecular dynamics study on aqueous sulfuric acid solutions
    • DOI 10.1063/1.2718526
    • Y.-K. Choe, E. Tsuchida, and T. Ikeshoji, J. Chem. Phys. 126, 154510 (2007). 10.1063/1.2718526 (Pubitemid 46644945)
    • (2007) Journal of Chemical Physics , vol.126 , Issue.15 , pp. 154510
    • Choe, Y.-K.1    Tsuchida, E.2    Ikeshoji, T.3
  • 61
    • 0141794028 scopus 로고    scopus 로고
    • Improved algorithm for geometry optimisation using damped molecular dynamics
    • DOI 10.1016/S0021-9991(03)00308-5
    • M. I. J. Probert, J. Comput. Phys. 191, 130 (2003). 10.1016/S0021- 9991(03)00308-5 (Pubitemid 37223473)
    • (2003) Journal of Computational Physics , vol.191 , Issue.1 , pp. 130-146
    • Probert, M.I.J.1
  • 66
    • 34548074471 scopus 로고    scopus 로고
    • Enhancing structure relaxations for first-principles codes: An approximate Hessian approach
    • DOI 10.1016/j.commatsci.2007.01.004, PII S0927025607000316
    • J. M. Rondinelli, B. Deng, and L. D. Marks, Comput. Mater. Sci. 40, 345 (2007). 10.1016/j.commatsci.2007.01.004 (Pubitemid 47296361)
    • (2007) Computational Materials Science , vol.40 , Issue.3 , pp. 345-353
    • Rondinelli, J.M.1    Deng, B.2    Marks, L.D.3
  • 69
    • 0001532042 scopus 로고
    • 10.1103/PhysRevB.34.895
    • R. Biswas and D. R. Hamann, Phys. Rev. B 34, 895 (1986). 10.1103/PhysRevB.34.895
    • (1986) Phys. Rev. B , vol.34 , pp. 895
    • Biswas, R.1    Hamann, D.R.2
  • 70
    • 0031144465 scopus 로고    scopus 로고
    • 10.1103/PhysRevLett.78.3908
    • A. F. Voter, Phys. Rev. Lett. 78, 3908 (1997). 10.1103/PhysRevLett.78. 3908
    • (1997) Phys. Rev. Lett. , vol.78 , pp. 3908
    • Voter, A.F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.