Early response mechanisms of perennial ryegrass (Lolium perenne) to phosphorus deficiency

Annals of Botany

Volumn 107, Issue 2, 2011, Pages 243-254

  Byrne, Stephen L ^a   Foito, Alexandre ^a,b   Hedley, Pete E ^b   Morris, Jenny A ^b   Stewart, Derek ^b   Barth, Susanne ^a  

^a TEAGASC   (Ireland)

^b SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

Author keywords

cross species hybridization; Lolium perenne; metabolic profiling; perennial ryegrass; phosphorus deficiency; transcript profiling

Indexed keywords

ORGANOPHOSPHORUS COMPOUND; PHOSPHORUS;

GAS CHROMATOGRAPHY; GENE EXPRESSION; GENOTYPE; GRASS; MASS SPECTROMETRY; MOLECULAR ANALYSIS; NUTRIENT USE EFFICIENCY; PHOSPHOLIPID; PHOSPHORUS;

ARTICLE; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENETICS; GENOTYPE; LOLIUM; MASS FRAGMENTOGRAPHY; METABOLISM; METABOLOME; PLANT GENOME;

GAS CHROMATOGRAPHY-MASS SPECTROMETRY; GENE EXPRESSION PROFILING; GENOME, PLANT; GENOTYPE; LOLIUM; METABOLOME; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; ORGANOPHOSPHORUS COMPOUNDS; PHOSPHORUS;

HORDEUM; LOLIUM PERENNE;

EID: 79551523406     PISSN: 03057364     EISSN: 10958290     Source Type: Journal    
DOI: 10.1093/aob/mcq234     Document Type: Article

References (61)

1. Anon. 2000. Indicators for the integration of environmental concerns into the common agricultural policy. Brussels: COM(2000) 20 final.
2. Anon. 2004. The United Nations on world population in 2300. Population and Development Review 30: 181-187.
3. Bar-Or C, Czosnek H, Koltai H. 2007. Cross-species microarray hybridizations: a developing tool for studying species diversity. Trends in Genetics 23: 200-207.
4. Benning C. 2009. Mechanisms of lipid transport involved in organelle biogenesis in plant cells. Annual Review of Cellular and Developmental Biology 25: 71-91.
5. Brazma A, Hingamp P, Quackenbush J et al. 2001. Minimum information about a microarray experiment (MIAME) - toward standards for microarray data. Nature Genetics 29: 365-371.
6. Chen X, Hackett CA, Niks RE et al. 2010. An eQTL analysis of partial resistance to Puccinia hordei in Barley. PLoS ONE 5: e8598. doi:10.1371/ journal.pone.0008598
7. Ciannamea S, Busscher-Lange J, de Folter S, Angenent GC, Immink RGH. 2006. Characterization of the vernalization response in Lolium perenne by a cDNA microarray approach. Plant and Cell Physiology 47: 481-492.
8. Cui XQ, Churchill GA. 2003. Statistical tests for differential expression in cDNA microarray experiments. Genome Biology 4: 210. doi:10.1186/ gb-2003-4-4-210
9. Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small amounts of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
10. Duan K, Yi K, Dang L, Huang H, Wu W, Wu P. 2008. Characterization of a sub-family of Arabidopsis genes with the SPX domain reveals their diverse functions in plant tolerance to phosphorus starvation. Plant Journal 54: 965-975.
11. Ducreux LJM, Morris WL, Prosser IM et al. 2008. Expression profiling of potato germplasm differentiated in quality traits leads to the identification of candidate flavour and texture genes. Journal of Experimental Botany 59: 4219-4231.
12. Duff SMG, Moorhead GBG, Lefebvre DD, Plaxton WC. 1989. Phosphate starvation inducible bypasses of adenylate and phosphate dependent glycolytic enzymes in Brassica nigra suspension cells. PlantPhysiology 90: 1275-1278.
13. Duff SMG, Sarath G, Plaxton WC. 1994. The role of acid-phosphatases in plant phosphorus metabolism. Physiologica Plantarum 90: 791-800.
14. Essigmann B, Guler S, Narang RA, Link D, Benning C. 1998. Phosphate availability affects the thylakoid lipid composition and the expression of SQD1, a gene required for sulfolipid biosynthesis in Arabidopsis thaliana. Proceedings of the National Academy of Sciences USA 95: 1950-1955.
15. Ferrier RC, Edwards AC. 2002. Sustainability of Scottish water quality in the early 21st century. Science of the Total Environment 294: 57-71.
16. Foito A, Byrne SL, Shepherd T, Stewart D, Barth S. 2009. Transcriptional and metabolic profiles of Lolium perenne L. genotypes in response to a PEG-induced water stress. Plant Biotechnology Journal 7: 719-732.
17. Foyer C, Spencer C. 1986. The relationship between phosphate status and photosynthesis in leaves - effects on intracellular ortho-phosphate distribution, photosynthesis and assimilate partitioning. Planta 167: 369-375.
18. Freedan AL, Rao IM, Terry N. 1989. Influence of phosphorus nutrition on growth and carbon partitioning in Glycine max. Plant Physiology 89: 225-230.
19. GuoW, Zhang L, Zhao J, Liao H, Zhuang C, Yan X. 2008. Identification of temporally and spatially phosphate-starvation responsive genes in Glycine max. Plant Science 175: 574-584.
20. Gyaneshwar P, Kumar GN, Parekh LJ, Poole PS. 2002. Role of soil microorganisms in improving P nutrition of plants. Plant and Soil 245: 83-93.
21. Hammond JP, Bennett MJ, Bowen HC et al. 2003. Changes in gene expression in Arabidopsis shoots during phosphate starvation and the potential for developing smart plants. Plant Physiology 132: 578-596.
22. Hammond JP, Broadley MR, White PJ. 2004. Genetic responses to phosphorus deficiency. Annals of Botany 94: 323-332.
23. Hammond JP, Broadley MR, Craigon DJ et al. 2005. Using genomic DNA-based probe-selection to improve the sensitivity of high-density oligonucleotide arrays when applied to heterologous species. Plant Methods 1: 10.
24. Hammond JP, White PJ. 2008. Sucrose transport in the phloem: integrating root responses to phosphorus starvation. Journal of Experimental Botany 59: 93-109.
25. He Z, Honeycutt CW. 2005. A modified molybdenum blue method for orthophosphate determination suitable for investigating enzymatic hydrolysis of organic phosphates. Communications in Soil Science and Plant Analysis 36: 1373-1383.
26. Hermans C, Hammond JP, White PJ, Verbruggen N. 2006. How do plants respond to nutrient shortage by biomass allocation? Trends in Plant Science 11: 610-617.
27. Hernandez G, Ramirez M, Valdes-Lopez O et al. 2007. Phosphorus stress in common bean: root transcript and metabolic responses. Plant Physiology 144: 752-767.
28. Hoch WA, Zeldin EL, McCown BH. 2001. Physiological significance of anthocyanins during autumnal leaf senescence. Tree Physiology 21: 1-8.
29. Huang CY, Roessner U, Eickmeier I et al. 2008. Metabolite profiling reveals distinct changes in carbon and nitrogen metabolism in phosphatedeficient barley plants (Hordeum vulgare L.). Plant and Cell Physiology 49: 691-703.
30. Humphreys MO. 2005. Genetic improvement of forage crops - past, present and future. Journal of Agricultural Science 143: 441-448.
31. Kaida R, Satoh Y, Bulone V et al. 2009. Activation of beta-glucan synthases by wall-bound purple acid phosphatase in tobacco cells. Plant Physiology 150: 1822-1830.
32. Koyama H, Kawamura A, Kihara T, Hara T, Takita E, Shibata D. 2000. Overexpression of mitochondrial citrate synthase in Arabidopsis thaliana improved growth on a phosphorus-limited soil. Plant and Cell Physiology 41: 1030-1037.
33. Lauer MJ, Pallardy SG, Blevins DG, Randall DD. 1989. Whole leaf carbon exchange characteristics of phosphate deficient soybeans (Glycine max L). Plant Physiology 91: 848-854.
34. Meijer HJG, Munnik T. 2003. Phospholipid-based signaling in plants. Annual Review of Plant Biology 54: 265-306.
35. Misson J, Raghothama KG, Jain A et al. 2005. A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation. Proceedings of the National Academy of Sciences USA 102: 11934-11939.
36. Petersen K, Didion T, Andersen CH, Nielsen KK. 2004. MADS-box genes fromperennial ryegrass differentially expressed during transition fromvegetative to reproductive growth. Journal of Plant Physiology 161: 439-447.
37. Pfaffl MW, Horgan GW, Dempfle L. 2002. Relative expression software tool (REST#) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Research 30: e36. Nucleic Acids Research 30: e36
38. Plaxton WC. 2004. Plant response to stress: biochemical adaptations to phosphate deficiency. In: Goodman R. ed. Encyclopedia of plant and crop science. New York, NY: Marcel Dekker, 976-980.
39. Raghothama KG. 1999. Phosphate acquisition. Annual Review of Plant Biology 50: 665-693.
40. Richardson AE, Hadobas PA, Hayes JE. 2001. Extracellular secretion of Aspergillus phytase from Arabidopsis roots enables plants to obtain phosphorus from phytate. Plant Journal 25: 641-649.
41. Richardson AE, Barea JM, McNeill AM, Prigent-Combaret C. 2009. Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms. Plant and Soil 321: 305-339.
42. Ramirez-Rodriguez V, Lopez-Bucio J, Herrera-Estrella L. 2005. Adaptive responses in plants to nonoptimal soil pH. In: Jenks MA, Hasegawa PM. eds. Plant abiotic stress. Oxford: Blackwell Publishing, 145-170.
43. Rodriguez D, Zubillaga MM, Ploschuk EL, Keltjens WG, Goudriaan J, Lavado RS. 1998. Leaf area expansion and assimilate production insunflower (Helianthus annuus L.) growing under low phosphorus conditions. Plant and Soil 202: 133-147.
44. Scheible WR, Pauly M. 2004. Glycosyltransferases and cell wall biosynthesis: novel players and insights. Current Opinion in Plant Biology 7: 285-295.
45. Schindler DW, Hecky RE, Findlay DL et al. 2008. Eutrophication of lakes cannot be controlled by reducing nitrogen input: results of a 37-year whole-ecosystem experiment. Proceedings of the National Academy of Sciences USA 105: 11254-11258.
46. Shih CY, Kao CH. 1996. Growth inhibition in suspension-cultured rice cells under phosphate deprivation is mediated through putrescine accumulation. Plant Physiology 111: 721-724.
47. Stryer L. 1995. Biochemistry, 4th edn. New York: WH Freeman.
48. Theodorou ME, Plaxton WC. 1993. Metabolic adaptations of plant respiration to nutritional phosphate deprivation. Plant Physiology 101: 339-344.
49. Theodorou ME, Cornel FA, Duff SM, Plaxton WC. 1992. Phosphate starvation-inducible synthesis of the alpha-subunit of the pyrophosphatedependent phosphofructokinase in black mustard suspension cells. Journal of Biological Chemistry 267: 21901-21905.
50. Tilman D. 1998. The greening of the green revolution. Nature 396: 211-212.
51. Uhde-Stone C, Gilbert G, Johnson JMF et al. 2003a. Acclimation of white lupin to phosphorus deficiency involves enhanced expression of genes related to organic acid metabolism. Plant and Soil 248: 99-116.
52. Uhde-Stone C, Zinn KE, Ramirez-Yanez M, Li A, Vance CP, Allan DL. 2003b. Nylon filter arrays reveal differential gene expression in proteoid roots of white lupin in response to phosphorus deficiency. Plant Physiology 131: 1064-1079.
53. Vaccari DA. 2009. Phosphorus: a looming crisis. Scientific American 300: 42-47.
54. Vance CP, Uhde-Stone C, Allan DL. 2003. Phosphorus acquisition and use: critical adaptations by plants for securing a nonrenewable resource. New Phytologist 157: 423-447.
55. Wang Y, Ribot C, Rezzonico E, Poirier Y. 2004. Structure and expression profile of the Arabidopsis PHO1 gene family indicates a broad role in inorganic phosphate homeostasis. Plant Physiology 135: 400-411.
56. Wasaki J, Yonetani R, Kuroda S et al. 2003. Transcriptomic analysis of metabolic changes by phosphorus stress in rice plant roots. Plant, Cell and Environment 26: 1515-1523.
57. Wasaki J, Shinano T, Onishi K et al. 2006. Transcriptomic analysis indicates putative metabolic changes caused by manipulation of phosphorus availability in rice leaves. Journal of Experimental Botany 57: 2049-2059.
58. Wassen MJ,Venterink HO, Lapshina ED,Tanneberger F. 2005. Endangered plants persist under phosphorus limitation. Nature 437: 547-550.
59. Wissuwa M, Gamat G, Ismail AM. 2005. Is root growth under phosphorus deficiency affected by source or sink limitations? Journal of Experimental Botany 56: 1943-1950.
60. Yang YH, Dudoit S, Luu P et al. 2002. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Research 30: e15. e15 doi:10.1093/nar/30.4.e15
61. Yu B, Xu C, Benning C. 2002. Arabidopsis disrupted in SQD2 encoding sulfolipid synthase is impaired in phosphate-limited growth. Proceedings of the National Academy of Sciences USA 99: 5732-5737.