메뉴 건너뛰기




Volumn 7, Issue 1, 2011, Pages 131-135

Impact of translational selection on codon usage bias in the archaeon Methanococcus maripaludis

Author keywords

Archaea; Codon usage; Selection; Translation

Indexed keywords

AMINO ACID; BACTERIUM; EUKARYOTE; GENE EXPRESSION; GENETIC ANALYSIS; GENETIC VARIATION; GENOME; GROWTH RATE; MUTATION; SELECTION;

EID: 79551481541     PISSN: 17449561     EISSN: 1744957X     Source Type: Journal    
DOI: 10.1098/rsbl.2010.0620     Document Type: Article
Times cited : (11)

References (19)
  • 1
    • 0025941139 scopus 로고
    • The selection-mutation-drift theory of synonymous codon usage
    • Bulmer, M. 1991 The selection-mutation-drift theory of synonymous codon usage. Genetics 129, 897-907.
    • (1991) Genetics , vol.129 , pp. 897-907
    • Bulmer, M.1
  • 2
    • 0022856787 scopus 로고
    • An evolutionary perspective on synonymous codon usage in unicellular organisms
    • doi:10.1007/BF02099948
    • Sharp, P. M. & Li, H. 1986 An evolutionary perspective on synonymous codon usage in unicellular organisms. J. Mol. Evol. 24, 28-38. (doi:10.1007/BF02099948)
    • (1986) J. Mol. Evol. , vol.24 , pp. 28-38
    • Sharp, P.M.1    Li, H.2
  • 3
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • Ikemura, T. 1985 Codon usage and tRNA content in unicellular and multicellular organisms. Mol. Biol. Evol. 2, 13-34.
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 13-34
    • Ikemura, T.1
  • 4
    • 0021370660 scopus 로고
    • Costs of accuracy determined by a maximal growth rate constraint
    • doi:10.1017/S0033583500005254
    • Ehrenberg, M. & Kurland, C. G. 1984 Costs of accuracy determined by a maximal growth rate constraint. Quart. Rev. Biophys. 17, 45-82. (doi:10.1017/S0033583500005254)
    • (1984) Quart. Rev. Biophys. , vol.17 , pp. 45-82
    • Ehrenberg, M.1    Kurland, C.G.2
  • 5
    • 8744310123 scopus 로고    scopus 로고
    • Codon usage bias from tRNA's point of view: Redundancy, specialization, and efficient decoding for translation optimization
    • DOI 10.1101/gr.2896904
    • Rocha, E. P. C. 2004 Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization. Genome Res. 14, 2279-2286. (doi:10.1101/gr.2896904) (Pubitemid 39517335)
    • (2004) Genome Research , vol.14 , Issue.11 , pp. 2279-2286
    • Rocha, E.P.C.1
  • 6
    • 14544277543 scopus 로고    scopus 로고
    • Variation in the strength of selected codon usage bias among bacteria
    • DOI 10.1093/nar/gki242
    • Sharp, P. M., Bailes, E., Grocock, R. J., Peden, J. F. & Sockett, R. E. 2005 Variation in the strength of selected codon usage bias among bacteria. Nucleic Acids Res. 33, 1141-1153. (doi:10.1093/nar/gki242) (Pubitemid 41439907)
    • (2005) Nucleic Acids Research , vol.33 , Issue.4 , pp. 1141-1153
    • Sharp, P.M.1    Bailes, E.2    Grocock, R.J.3    Peden, J.F.4    Sockett, R.E.5
  • 7
    • 77951570815 scopus 로고    scopus 로고
    • Forces that influence the evolution of codon bias
    • doi:10.1098/rstb.2009. 0305
    • Sharp, P. M., Emery, L. R. & Zeng, K. 2010 Forces that influence the evolution of codon bias. Phil. Trans. R. Soc. B 365, 1203-1212. (doi:10.1098/rstb.2009. 0305)
    • (2010) Phil. Trans. R. Soc. B. , vol.365 , pp. 1203-1212
    • Sharp, P.M.1    Emery, L.R.2    Zeng, K.3
  • 8
    • 76749155783 scopus 로고    scopus 로고
    • The systemic imprint of growth and its uses in ecological (meta) genomics
    • doi:10. 1371/journal.pgen. 1000808
    • Vieira-Silva, S. & Rocha, E. P. C. 2010 The systemic imprint of growth and its uses in ecological (meta) genomics. PLoS Genet. 6, e1000808. (doi:10. 1371/journal.pgen. 1000808)
    • (2010) PLoS Genet. , vol.6
    • Vieira-Silva, S.1    Rocha, E.P.C.2
  • 10
    • 33845874641 scopus 로고    scopus 로고
    • Predicting gene expression level from codon usage bias
    • DOI 10.1093/molbev/msl148
    • Henry, I. & Sharp, P. M. 2007 Predicting gene expression level from codon usage bias. Mol. Biol. Evol. 24, 10-12. (doi:10.1093/molbev/msl148) (Pubitemid 46026275)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.1 , pp. 10-12
    • Henry, I.1    Sharp, P.M.2
  • 11
    • 4644280499 scopus 로고    scopus 로고
    • Solving the riddle of codon usage preferences: A test for translational selection
    • doi:10. 1093/nar/gkh834
    • Dos Reis, M., Savva, R. & Wernisch, L. 2004 Solving the riddle of codon usage preferences: a test for translational selection. Nucleic Acids Res. 32, 5036-5044. (doi:10. 1093/nar/gkh834)
    • (2004) Nucleic Acids Res. , vol.32 , pp. 5036-5044
    • Reis, D.M.1    Savva, R.2    Wernisch, L.3
  • 12
    • 0002620715 scopus 로고
    • Characterization of Methanococcus maripaludis sp. nov., a new methanogen isolated from salt marsh sediment
    • doi:10.1007/BF00408015
    • Jones, W. J., Paynter, M. J. B. & Gupta, R. 1983 Characterization of Methanococcus maripaludis sp. nov., a new methanogen isolated from salt marsh sediment. Arch. Microbiol. 135, 91-97. (doi:10.1007/BF00408015)
    • (1983) Arch. Microbiol. , vol.135 , pp. 91-97
    • Jones, W.J.1    Paynter, M.J.B.2    Gupta, R.3
  • 13
    • 4944254822 scopus 로고    scopus 로고
    • Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis
    • doi:10.1128/JB.186.20.6956-6969. 2004
    • Hendrickson, E. L. et al. 2004 Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis. J. Bacteriol. 186, 6956-6969. (doi:10.1128/JB.186.20.6956-6969. 2004)
    • (2004) J. Bacteriol. , vol.186 , pp. 6956-6969
    • Hendrickson, E.L.1
  • 14
    • 33646927488 scopus 로고    scopus 로고
    • Quantitative proteomics of the archaeon Methanococcus maripaludis validated by microarray analysis and real time PCR
    • doi:10.1074/mcp. M500369-MCP200
    • Xia, Q. et al. 2006 Quantitative proteomics of the archaeon Methanococcus maripaludis validated by microarray analysis and real time PCR. Mol. Cell. Proteomics 5, 868-881. (doi:10.1074/mcp. M500369-MCP200)
    • (2006) Mol. Cell. Proteomics , vol.5 , pp. 868-881
    • Xia, Q.1
  • 15
    • 0022118360 scopus 로고
    • ACNUC-a portable retrieval system for nucleic acid sequence databases: Logical and physical design and usage
    • Gouy, M., Gautier, C., Attimonelli, M., Lanave, C. & Di Paola, G. 1985 ACNUC-a portable retrieval system for nucleic acid sequence databases: logical and physical design and usage. Comp. Appl. Biosci. 1, 167-172.
    • (1985) Comp. Appl. Biosci. , vol.1 , pp. 167-172
    • Gouy, M.1    Gautier, C.2    Attimonelli, M.3    Lanave, C.4    Di Paola, G.5
  • 16
    • 58149189877 scopus 로고    scopus 로고
    • GtRNAdb: A database of transfer RNA genes detected in genomic sequence
    • doi:10.1093/nar/gkn787
    • Chan, P. P. & Lowe, T. M. 2009 GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res. 37, D93-D97. (doi:10.1093/nar/gkn787)
    • (2009) Nucleic Acids Res. , vol.37
    • Chan, P.P.1    Lowe, T.M.2
  • 17
    • 0025318864 scopus 로고
    • The 'effective number of codons' used in a gene
    • doi:10.1016/0378-1119 90 90491-9
    • Wright, F. 1990 The 'effective number of codons' used in a gene. Gene 87, 23-29. (doi:10.1016/0378-1119 (90) 90491-9)
    • (1990) Gene , vol.87 , pp. 23-29
    • Wright, F.1
  • 18
    • 0023650543 scopus 로고
    • The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications
    • doi:10.1093/nar/15.3.1281
    • Sharp, P. M. & Li, H. 1987 The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15, 1281-1295. (doi:10.1093/nar/15.3.1281)
    • (1987) Nucleic Acids Res. , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, H.2
  • 19
    • 0032882170 scopus 로고    scopus 로고
    • Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: Gene expression level and species-specific diversity of codon usage based on multivariate analysis
    • doi:10.1016/S0378-1119 99 00225-5
    • Kanaya, S., Yamada, Y., Kudo, Y. & Ikemura, T. 1999 Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis. Gene 238, 143-155. (doi:10.1016/S0378-1119 (99) 00225-5)
    • (1999) Gene , vol.238 , pp. 143-155
    • Kanaya, S.1    Yamada, Y.2    Kudo, Y.3    Ikemura, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.