Phylogeny of the ascomycetous yeasts and the renaming of Pichia anomala to Wickerhamomyces anomalus

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 99, Issue 1, 2011, Pages 13-23

  Kurtzman, Cletus P ^a  

^a NONE

Author keywords

Biocontrol yeasts; Phylogeny; Pichia anomala; Wickerhamomyces anomalus

Indexed keywords

ELONGATION FACTOR 1ALPHA; LARGE SUBUNIT RIBOSOMAL RNA; SMALL SUBUNIT RIBOSOMAL RNA;

ASCOMYCETES; GENUS; NOMENCLATURE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PICHIA; PICHIA ANOMALA; PICHIA MEMBRANIFACIENS; PRIORITY JOURNAL; REVIEW; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; UNINDEXED SEQUENCE; WICKERHAMOMYCES ANOMALUS;

ASCOMYCOTA; PHYLOGENY; TERMINOLOGY AS TOPIC;

PICHIA; PICHIA ANOMALA; PICHIA MEMBRANIFACIENS;

EID: 79451469119     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-010-9505-6     Document Type: Review

References (33)

1. CL Bedford 1942 A taxonomic study of the genus Hansenula Mycologia 34 628 649 10.2307/3754607
2. J Cai IN Roberts D Collins 1996 Phylogenetic relationships among members of the ascomycetous yeast genera Brettanomyces, Debaryomyces, Dekkera and Kluyveromyces deduced by small-subunit rRNA gene sequences Int J Syst Bacteriol 46 542 549 1:CAS:528:DyaK28XivFajsbY%3D 10.1099/00207713-46-2-542 8934908
3. HM Daniel W Meyer 2003 Evaluation of ribosomal RNA and actin gene sequences for the identification of ascomycetous yeasts Int J Food Microbiol 86 71 78 10.1016/S0168-1605(03)00248-4
4. JW Fell T Boekhout A Fonseca G Scorzetti A Statzell-Tallman 2000 Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis Int J Syst Evol Microbiol 50 1351 1371 1:CAS:528:DC%2BD3cXktF2gt7Y%3D 10843082
5. Fischer B, Brebeck C (1894) Zur Morphologie, Biologie, und Systematik der Kahmpilze, der Monilia candida Hansen und des Soorerregers. C. Fischer, Jena
6. DA Fitzpatrick ME Logue JE Stajich G Butler 2006 A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis BMC Evol Biol 6 99 113 10.1186/1471-2148-6-99 17121679
7. Gellissen G (2002) Hansenula polymorpha: biology and applications. Wiley-VCH Verlag, GmbH, Weinheim, Germany
8. C Groth J Hansen J Piškur 1999 A natural chimeric yeast containing genetic material from three species Int J Syst Bacteriol 49 1933 1938 1:CAS:528:DyaK1MXnsFGiu7g%3D 10.1099/00207713-49-4-1933 10555378
9. EC Hansen 1891 Sur la germination des spores chez les Saccharomyces Ann Micrographic 3 449 474
10. EC Hansen 1904 Grundlinien zur Systematik der Saccharomyceten Zentralbl. Bakteriol. Parasitenkd., Abt. II 12 529 538
11. TY James F Kauff CL Schoch PB Matheny V Hofstetter CJ Cox G Celio C Gueidan E Fraker J Miadlikowska HT Lumbsch A Rauhut V Reeb AE Arnold A Amtoft JE Stajich K Hosaka GH Sung D Johnson B O'Rourke M Crockett M Binder JM Curtis JC Slot Z Wang AW Wilson A Schüssler JE Longcore K O'Donnell S Mozley-Standridge D Porter PM Letcher MJ Powell JW Taylor MM White GW Griffith DR Davies RA Humber JB Morton J Sugiyama AY Rossman JD Rogers DH Pfister D Hewitt K Hansen S Hambleton RA Shoemaker J Kohlmeyer B Volkmann-Kohlmeyer RA Spotts M Serdani PW Crous KW Hughes K Matsuura E Langer G Langer WA Untereiner R Lücking B Büdel DM Geiser A Aptroot P Diederich I Schmitt M Schultz R Yahr DS Hibbett F Lutzoni DJ McLaughlin JW Spatafora R Vilgalys 2006 Reconstructing the early evolution of Fungi using a six-gene phylogeny Nature 443 818 822 1:CAS:528:DC%2BD28XhtVyktbjN 10.1038/nature05110 17051209
12. Kirk PM, Cannon PF, Minter DW, Stalpers JA (2008) Ainsworth & Bisby's dictionary of the fungi, 10th edn. CABI International, Wallingford, Oxon, UK
13. CP Kurtzman 1984 Synonymy of the yeast genera Hansenula and Pichia demonstrated through comparisons of deoxyribonucleic acid relatedness Antonie van Leeuwenhoek 50 209 217 1:CAS:528:DyaL2cXmtVOnurw%3D 10.1007/BF02342132 6486768
14. Kurtzman CP (1998) Pichia E.C. Hansen emend. Kurtzman. In: Kurtzman CP, Fell JW (eds) The yeasts, A taxonomic study, 4th edn. Elsevier, Amsterdam, pp 273-352
15. CP Kurtzman CJ Robnett 1998 Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences Antonie van Leeuwenhoek 73 331 371 1:CAS:528:DyaK1MXjtFOjsg%3D%3D 10.1023/A:1001761008817 9850420
16. CP Kurtzman CJ Robnett 2003 Phylogenetic relationships among yeasts of the 'Saccharomyces complex' determined from multigene sequence analyses FEMS Yeast Res 3 417 432 1:CAS:528:DC%2BD3sXjs1eksLs%3D 10.1016/S1567-1356(03)00012-6 12748053
17. CP Kurtzman CJ Robnett 2007 Multigene phylogenetic analysis of the Trichomonascus, Wickerhamiella and Zygoascus yeast clades, and the proposal of Sugiyamaella gen.nov. and 14 new species combinations FEMS Yeast Res 7 141 151 1:CAS:528:DC%2BD2sXhslyhu78%3D 10.1111/j.1567-1364.2006.00157.x 17311592
18. CP Kurtzman CJ Robnett 2010 Systematics of methanol assimilating yeasts and neighboring taxa from multigene sequence analysis and the proposal of Peterozyma gen. nov FEMS Yeast Res 10 353 361 1:CAS:528:DC%2BC3cXlslyjtL8%3D 10.1111/j.1567-1364.2010.00625.x 20522116
19. CP Kurtzman M Suzuki 2010 Phylogenetic analysis of ascomycete yeasts that form coenzyme Q-9 and the proposal of the new genera Babjeviella, Meyerozyma, Millerozyma, Priceomyces and Scheffersomyces Mycoscience 51 2 14 1:CAS:528:DC%2BC3cXitVKnsr8%3D 10.1007/s10267-009-0011-5
20. CP Kurtzman MA Lachance HV Nguyen H Prillinger 2001 Proposal to conserve the name Kluyveromyces with a conserved type (Ascomycota: Hemiascomycetes, Saccharomycetaceae) Taxon 50 907 908 10.2307/1223723
21. CP Kurtzman CJ Robnett E Basehoar-Powers 2008 Relationships among species of Pichia, Issatchenkia and Williopsis determined from multigene phylogenetic analysis and the proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov FEMS Yeast Res 8 939 954 1:CAS:528:DC%2BD1cXhtVyltLnJ 10.1111/j.1567-1364.2008.00419.x 18671746
22. Z Liu CP Kurtzman 1991 Phylogenetic relationships among species of Williopsis and Saturnospora gen. nov. as determined from partial rRNA sequences Antonie van Leeuwenhoek 60 21 30 10.1007/BF00580437 1796804
23. Lodder J, Kreger-van Rij NJW (1952) The yeasts, A taxonomic study. North-Holland, Amsterdam
24. DM Minter 2009 Cyberlindnera, a replacement name for Lindnera Kurtzman et al., nom. illegit Mycotaxon 110 473 476 10.5248/110.473
25. SW Peterson CP Kurtzman 1991 Ribosomal RNA sequence divergence among sibling species of yeasts Syst Appl Microbiol 14 124 129 1:CAS:528: DyaK3MXltlWksLs%3D
26. CW Price GB Fuson HJ Phaff 1978 Genome comparison in yeast systematics: delimitation of species within the genera Schwanniomyces, Saccharomyces, Debaryomyces and Pichia Microbiol Rev 42 161 193 1:CAS:528:DyaE1cXktVart7Y%3D 379571
27. H Sydow P Sydow 1919 Mykologische Mitteilungen Ann Mycol 17 33 47
28. Vaughan-Martini A, Martini A (1998) Saccharomyces Meyen ex Reess. In: Kurtzman CP, Fell JW (eds) The yeasts, A taxonomic study, 4th edn. Elsevier, Amsterdam, pp 358-371
29. von Nägeli C (1879) Theorie der Gährung. Ein Beitrag zur Molekularphysiologie. München
30. Wickerham LJ (1951) Taxonomy of yeasts. Techn Bull 1029. US Dept Agr, Washington, DC
31. Wickerham LJ (1970) Hansenula H. et P. Sydow. In: Lodder J (ed) The yeasts, A taxonomic study, 2nd edn. North-Holland, Amsterdam, pp 226-315
32. Y Yamada K Maeda K Mikata 1994 The phylogenetic relationships of the hat-shaped ascospore-forming, nitrate-assimilating Pichia species, formerly classified in the genus Hansenula Sydow et Sydow, based on the partial sequences of 18S and 26S ribosomal RNAs (Saccharomycetaceae): the proposals of three new genera, Ogataea, Kuraishia, and Nakazawaea Biosci Biotechnol Biochem 58 1245 1257 1:CAS:528:DyaK2cXmslegu7c%3D 10.1271/bbb.58.1245 7765249
33. Y Yamada M Matsuda K Maeda K Mikata 1995 The phylogenetic relationships of methanol-assimilating yeasts based on the partial sequences of 18S and 26S ribosomal RNAs: the proposal of Komagataella gen. nov. (Saccharomycetaceae) Biosci Biotechnol Biochem 59 439 444 1:CAS:528:DyaK2MXkvVertLs%3D 10.1271/bbb.59.439 7766181