DeStripe: Frequency-based algorithm for removing stripe noises from AFM images

BMC Structural Biology

Volumn 11, Issue , 2011, Pages

  Chen, Shu Wen W ^a   Pellequer, Jean Luc ^a  

^a DIF   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ATOMIC FORCE MICROSCOPY; IMAGE QUALITY; NOISE; NOISE REDUCTION; SCANNING ELECTRON MICROSCOPE; STRIPE NOISE; ALGORITHM; ARTIFACT; IMAGE PROCESSING; METHODOLOGY;

ALGORITHMS; ARTIFACTS; IMAGE PROCESSING, COMPUTER-ASSISTED; MICROSCOPY, ATOMIC FORCE;

EID: 79351469413     PISSN: None     EISSN: 14726807     Source Type: Journal    
DOI: 10.1186/1472-6807-11-7     Document Type: Article

References (33)

1. Atomic force microscope. G Binnig CF Quate C Gerber, Phys Rev Lett 1986 56 930 933 10.1103/PhysRevLett.56.930 10033323
2. Structural information, resolution, and noise in high-resolution atomic force microscopy topographs. P Fechner T Boudier S Mangenot S Jaroslawski JN Sturgis S Scheuring, Biophys J 2009 96 3822 3831 10.1016/j.bpj.2009.02.011 19413988
3. Scanning probe evolution in biology. JKH H (Pubitemid 37390832)
4. Past, present and future of atomic force microscopy in life sciences and medicine. P Parot YF Dufrene P Hinterdorfer C Le Grimellec D Navajas JL Pellequer S Scheuring, J Mol Recogn 2007 20 418 431 10.1002/jmr.857
5. High-speed atomic force microscopy for observing dynamic biomolecular processes. T Ando T Uchihashi N Kodera D Yamamoto M Taniguchi A Miyagi H Yamashita, J Mol Recognit 2007 20 448 458 10.1002/jmr.843 17902097
6. Structure and mechanics of membrane proteins. A Engel HE Gaub, Annu Rev Biochem 2008 77 127 148 10.1146/annurev.biochem.77.062706.154450 18518819
7. High-resolution imaging and force measurement of individual membrane proteins by AFM. F Oesterhelt S Scheuring, Curr Nanosci 2006 2 329 335 10.2174/157341306778699347 (Pubitemid 44697121)
8. Atomic force microscopy and dissection of gap junctions. JH Hoh R Lal SA John JP Revel MF Arnsdorf, Science 1991 253 1405 1408 10.1126/science.1910206 1910206 (Pubitemid 21917291)
9. Imaging purple membranes in aqueous solutions at sub-nanometer resolution by atomic force microscopy. DJ Muller FA Schabert G Buldt A Engel, Biophys J 1995 68 1681 1686 10.1016/S0006-3495(95)80345-0 7612811
10. Nanodissection and high-resolution imaging of the Rhodopseudomonas viridis photosynthetic core complex in native membranes by AFM. Atomic force microscopy. S Scheuring J Seguin S Marco D Levy B Robert JL Rigaud, Proc Natl Acad Sci USA 2003 100 1690 1693 10.1073/pnas.0437992100 12574504 (Pubitemid 36254509)
11. Energy landscape of chelated uranyl - antibody interactions by Dynamic Force Spectroscopy. M Odorico JM Teulon L Bellanger C Vidaud T Bessou S-wW Chen E Quemeneur P Parot JL Pellequer, Biophys J 2007 93 645 654 10.1529/biophysj. 106.098129 17449661 (Pubitemid 47057829)
12. What is the biological relevance of the specific bond properties revealed by single-molecule studies? P Robert AM Benoliel A Pierres P Bongrand, J Mol Recognit 2007 20 432 447 10.1002/jmr.827 17724759
13. Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy. KC Neuman A Nagy, Nat Meth 2008 5 491 505 10.1038/nmeth.1218 (Pubitemid 351761756)
14. Deciphering the energy landscape of the interaction uranyl-DCP with antibodies using dynamic force spectroscopy. JM Teulon P Parot M Odorico JL Pellequer, Biophys J 2008 95 63 L65 10.1529/biophysj.108.141937 18790844
15. Spatially resolved force spectroscopy of bacterial surfaces using force-volume imaging. F Gaboriaud BS Parcha ML Gee JA Holden RA Strugnell, Colloids Surf B Biointerfaces 2008 62 206 213 10.1016/j.colsurfb.2007.10.004 18023156 (Pubitemid 351274019)
16. Do-it-yourself guide: how to use the modern single-molecule toolkit. NG Walter CY Huang AJ Manzo MA Sobhy, Nat Meth 2008 5 475 489 10.1038/nmeth.1215 (Pubitemid 351761755)
17. Force probing surfaces of living cells to molecular resolution. DJ Müller J Helenius D Alsteens YF Dufrne, Nat Chem Biol 2009 5 383 390 19448607
18. Fractured polymer/silica fiber surface studied by tapping mode atomic force microscopy. Q Zhong D Inniss K Kjoller V Elings, Surf Sci Lett 1993 290 688 L692 10.1016/0039-6028(93)90582-5
19. A method for modeling noise in medical images. P Gravel G Beaudoin JA De Guise, IEEE Trans Medical Imaging 2004 22 1221 1232 10.1109/TMI.2004.832656
20. Digital image processing. RC Gonzalez RE Woods, New Jersey: Pearson Education 3 2008
21. Stripe and ring artifact removal with combined wavelet-Fourier filtering. B Munch P Trtik F Marone M Stampanoni, Opt Express 2009 17 8568 8591
22. Frequency domain median-like filter for periodic and quasi-periodic noise removal. I Aizenberg C Butakoff, SPIE Proc Image Process 2002 4667 181 191 (Pubitemid 34918242)
23. Salt-and-pepper noise removal by median-type noise detectors and detailpreserving regularization. RH Chan C-W Ho M Nikolova, IEEE Trans Image Process 2005 14 10 1479 1485 10.1109/TIP.2005.852196 16238054 (Pubitemid 41623079)
24. JA Koziol, Intutive biostatistics New York: Oxford University Press 1995
25. Selective removal of impulse noise based on homogeneity level information. G Pok J-C Liu AS Nair, IEEE Trans Image Process 2003 12 85 91 10.1109/TIP.2002.804278 18237881
26. R Baierlein, Newtonian dynamics McGraw-Hill 1983
27. K Madsen HB Nielsen O Tingleff, Methods for non-linear least squares problems Technical University of Denmark 2 2004
28. An optimal nonorthogonal separation of the anisotropic Gaussian convolution filter. CH Lampert O Wirjadi, IEEE Trans Image Process 2006 15 3501 3513 10.1109/TIP.2006.877501 17076408 (Pubitemid 44615144)
29. Scanning electron microscopy: physics of image formation and microanalysis. L Reimer PW Hawkes, Springer 2 1998
30. Tobacco mosaic virus as an AFM tip calibrator. M-H Trinh M Odorico L Bellanger M Jacquemond P Parot J-L Pellequer, J Mol Recognit 2011 24 :
31. Improving the contrast of topographical AFM images by a simple averaging filter. F Kienberger VP Pastushenko G Kada T Puntheeranurak L Chtcheglova C Riethmueller C Rankl A Ebner P Hinterdorfer, Ultramicroscopy 2006 106 822 828 10.1016/j.ultramic.2005.11.013 16675120 (Pubitemid 43994328)
32. Study on methods on noise reduction in a stripped image. C-y Chi J-x Zhang Z-j Liu, XXI ISPRS Congress, Youth Forum: 2008; Beijing The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences 2008 213 216
33. Gwyddion - Free SPM (AFM, SNOM/NSOM, STM, MFM,.) data analysis software. http://gwyddion.net