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Volumn 34, Issue 1, 2011, Pages 21-31

Applying dimorphic yeasts as model organisms to study mycelial growth: Part 2. Use of mathematical simulations to identify different construction principles in yeast colonies

Author keywords

Biomass decay; Cellular automaton model; Nutrient translocation; Yeast mycelia

Indexed keywords

CANDIDA BOIDINII; CELLULAR AUTOMATON MODEL; COLONY BOUNDARY; CONSTRUCTION PRINCIPLE; CONTINUOUS DISTRIBUTION; DIFFUSION LIMITED; DISCRETE CELLS; GROWTH ALGORITHMS; HYBRID CELLULAR AUTOMATONS; MATHEMATICAL SIMULATIONS; MODEL ORGANISMS; MYCELIAL GROWTH; NUTRIENT TRANSLOCATION; ONE-DIMENSIONAL MODEL; SIMULATION ALGORITHMS; SPATIO-TEMPORAL; Y. LIPOLYTICA; YARROWIA LIPOLYTICA; YEAST COLONY;

EID: 79251620911     PISSN: 16157591     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00449-010-0443-5     Document Type: Article
Times cited : (5)

References (27)
  • 2
    • 0003250966 scopus 로고    scopus 로고
    • Nutrient translocation and electrical signalling in mycelia
    • N.A.R. Gow G.D. Robson G.M. Gadd (eds). 1 University Press Cambridge
    • Olsson L (1999) Nutrient translocation and electrical signalling in mycelia. In: Gow NAR, Robson GD, Gadd GM (eds) The fungal colony, 1st edn. University Press, Cambridge
    • (1999) The Fungal Colony
    • Olsson, L.1
  • 3
    • 0031817662 scopus 로고    scopus 로고
    • 14C-AIB) translocation in intact basidiomycete mycelia
    • 1:CAS:528:DyaK1cXjvFOhsL4%3D 10.1111/j.1574-6941.1998.tb00497.x
    • 14C-AIB) translocation in intact basidiomycete mycelia FEMS Microbiol Ecol 26 109 120 1:CAS:528: DyaK1cXjvFOhsL4%3D 10.1111/j.1574-6941.1998.tb00497.x
    • (1998) FEMS Microbiol Ecol , vol.26 , pp. 109-120
    • Olsson, S.1    Gray, S.N.2
  • 4
    • 2542443817 scopus 로고    scopus 로고
    • Translocation of carbon by Rhizoctonia solani in nutritionally- heterogeneous microcosms
    • DOI 10.1017/S0953756204009840
    • H Jacobs GP Boswell CM Scrimgeour FA Davidson GM Gadd K Ritz 2004 Translocation of carbon by Rhizoctonia solani in nutritionally-heterogeneous microcosms Mycol Res 108 453 462 10.1017/S0953756204009840 (Pubitemid 38681849)
    • (2004) Mycological Research , vol.108 , Issue.4 , pp. 453-462
    • Jacobs, H.1    Boswell, G.P.2    Scrimgeour, C.M.3    Davidson, F.A.4    Gadd, G.M.5    Ritz, K.6
  • 7
    • 0000801479 scopus 로고    scopus 로고
    • Travelling waves and pattern formation in a model for fungal development
    • 10.1007/s002850050067
    • FA Davidson BD Sleeman ADM Rayner JW Crawford K Ritz 1997 Travelling waves and pattern formation in a model for fungal development J Math Biol 35 589 608 10.1007/s002850050067
    • (1997) J Math Biol , vol.35 , pp. 589-608
    • Davidson, F.A.1    Sleeman, B.D.2    Rayner, A.D.M.3    Crawford, J.W.4    Ritz, K.5
  • 8
    • 0002222001 scopus 로고    scopus 로고
    • A mathematical model for fungal development in heterogeneous environments
    • 10.1016/S0893-9659(98)00102-5
    • FA Davidson AW Park 1998 A mathematical model for fungal development in heterogeneous environments Appl Math Lett 11 51 56 10.1016/S0893-9659(98)00102-5
    • (1998) Appl Math Lett , vol.11 , pp. 51-56
    • Davidson, F.A.1    Park, A.W.2
  • 9
    • 0032495076 scopus 로고    scopus 로고
    • Modelling the qualitative response of fungal mycelia to heterogeneous environments
    • DOI 10.1006/jtbi.1998.0739
    • FA Davidson 1998 Modelling the qualitative response of fungal mycelia to heterogeneous environments J Theor Biol 195 281 292 10.1006/jtbi.1998.0739 (Pubitemid 28543012)
    • (1998) Journal of Theoretical Biology , vol.195 , Issue.3 , pp. 281-292
    • Davidson, F.A.1
  • 11
    • 0036403299 scopus 로고    scopus 로고
    • Functional consequences of nutrient translocation in mycelial fungi
    • DOI 10.1006/jtbi.2002.3048
    • GP Boswell H Jacobs FA Davidson GM Gadd K Ritz 2002 Functional consequences of nutrient translocation in mycelial fungi J Theor Biol 217 459 477 1:CAS:528:DC%2BD38XmvVams7Y%3D 10.1006/jtbi.2002.3048 (Pubitemid 35191763)
    • (2002) Journal of Theoretical Biology , vol.217 , Issue.4 , pp. 459-477
    • Boswell, G.P.1    Jacobs, H.2    Davidson, F.A.3    Gadd, G.M.4    Ritz, K.5
  • 12
    • 0242499929 scopus 로고    scopus 로고
    • Growth and function of fungal mycelia in heterogeneous environments
    • DOI 10.1016/S0092-8240(03)00003-X
    • GP Boswell H Jacobs FA Davidson GM Gadd K Ritz 2003 Growth and function of fungal mycelia in heterogeneous environments Bull Math Biol 65 447 477 10.1016/S0092-8240(03)00003-X (Pubitemid 36521828)
    • (2003) Bulletin of Mathematical Biology , vol.65 , Issue.3 , pp. 447-477
    • Boswell, G.P.1    Jacobs, H.2    Davidson, F.A.3    Gadd, G.M.4    Ritz, K.5
  • 14
    • 9344263423 scopus 로고    scopus 로고
    • Simulating colonial growth of fungi with the neighbour-sensing model of hyphal growth
    • DOI 10.1017/S0953756204001261
    • A Meskauskas MD Fricker D Moore 2004 Simulating colonial growth of fungi with the Neighbour-Sensing model of hyphal growth Mycol Res 108 1241 1256 10.1017/S0953756204001261 (Pubitemid 39554192)
    • (2004) Mycological Research , vol.108 , Issue.11 , pp. 1241-1256
    • Meskauskas, A.1    Fricker, M.D.2    Moore, D.3
  • 15
    • 17744401235 scopus 로고    scopus 로고
    • Concerted regulation of all hyphal tips generates fungal fruit body structures: Experiments with computer visualizations produced by a new mathematical model of hyphal growth
    • DOI 10.1017/S0953756204009670
    • A Meskauskas LJ McNulty D Moore 2004 Concerted regulation of all hyphal tips generates fungal fruit body structures: experiments with computer visualizations produced by a new mathematical model of hyphal growth Mycol Res 108 341 353 10.1017/S0953756204009670 (Pubitemid 38681840)
    • (2004) Mycological Research , vol.108 , Issue.4 , pp. 341-353
    • Meskauskas, A.1    McNulty, L.J.2    Moore, D.3
  • 16
    • 3042645191 scopus 로고    scopus 로고
    • Mathematical modeling of regulatory mechanisms in yeast colony development
    • DOI 10.1016/j.jtbi.2004.04.004, PII S0022519304001432
    • T Walther H Reinsch A Grosse K Ostermann A Deutsch T Bley 2004 Mathematical modeling of regulatory mechanisms in yeast colony development J Theor Biol 229 327 338 1:CAS:528:DC%2BD2cXlsVSgtr8%3D 10.1016/j.jtbi.2004.04.004 (Pubitemid 38844937)
    • (2004) Journal of Theoretical Biology , vol.229 , Issue.3 , pp. 327-338
    • Walther, Th.1    Reinsch, H.2    Grosse, A.3    Ostermann, K.4    Deutsch, A.5    Bley, Th.6
  • 17
    • 18144370428 scopus 로고    scopus 로고
    • Coordinated development of yeast colonies: Quantitative modeling of diffusion-limited growth - Part 2
    • DOI 10.1002/elsc.200420060
    • T Walther H Reinsch K Ostermann A Deutsch T Bley 2005 Coordinated development of yeast colonies: quantitative modeling of diffusion-limited growth-Part 2 Eng Life Sci 5 125 133 1:CAS:528:DC%2BD2MXktFKju70%3D 10.1002/elsc.200420060 (Pubitemid 40613419)
    • (2005) Engineering in Life Sciences , vol.5 , Issue.2 , pp. 125-133
    • Walther, T.1    Reinsch, H.2    Ostermann, K.3    Deutsch, A.4    Bley, T.5
  • 19
    • 1542344734 scopus 로고    scopus 로고
    • Modeling of self-organized avascular tumor growth with a hybrid cellular automaton
    • 1:CAS:528:DC%2BD38Xpsl2ks7s%3D
    • S Dormann A Deutsch 2002 Modeling of self-organized avascular tumor growth with a hybrid cellular automaton In Silico Biol 2 393 406 1:CAS:528:DC%2BD38Xpsl2ks7s%3D
    • (2002) In Silico Biol , vol.2 , pp. 393-406
    • Dormann, S.1    Deutsch, A.2
  • 20
    • 0027909730 scopus 로고
    • A thermodynamically based correlation for maintenance gibbs energy requirements in aerobic and anaerobic chemotrophic growth
    • 1:CAS:528:DyaK3sXltlOmsr8%3D 10.1002/bit.260420415
    • L Tijhuis MCM van Loosdrecht JJ Heijnen 1993 A thermodynamically based correlation for maintenance gibbs energy requirements in aerobic and anaerobic chemotrophic growth Biotechnol Bioeng 42 509 519 1:CAS:528:DyaK3sXltlOmsr8%3D 10.1002/bit.260420415
    • (1993) Biotechnol Bioeng , vol.42 , pp. 509-519
    • Tijhuis, L.1    Van Loosdrecht, M.C.M.2    Heijnen, J.J.3
  • 21
    • 33947458237 scopus 로고
    • Diffusion measurements at 25 °c, of aqueous solutions of amino acids, peptides and sugars
    • 1:CAS:528:DyaG2cXhslaitw%3D%3D 10.1021/ja01118a065
    • LG Longsworth 1953 Diffusion measurements at 25 °C, of aqueous solutions of amino acids, peptides and sugars J Am Chem Soc 75 5705 5709 1:CAS:528:DyaG2cXhslaitw%3D%3D 10.1021/ja01118a065
    • (1953) J Am Chem Soc , vol.75 , pp. 5705-5709
    • Longsworth, L.G.1
  • 22
    • 0034946945 scopus 로고    scopus 로고
    • Diffusion and related transport mechanisms in brain tissue
    • DOI 10.1088/0034-4885/64/7/202
    • C Nicholson 2001 Diffusion and related transport mechanisms in brain tissue Rep Prog Phys 64 815 884 1:CAS:528:DC%2BD3MXlslSnu7k%3D 10.1088/0034-4885/64/7/202 (Pubitemid 32657274)
    • (2001) Reports on Progress in Physics , vol.64 , Issue.7 , pp. 815-884
    • Nicholson, C.1
  • 23
    • 18144397241 scopus 로고    scopus 로고
    • Coordinated development of yeast colonies: An experimental analysis of the adaptation to different nutrient concentrations - Part 1
    • DOI 10.1002/elsc.200422459
    • T Walther H Reinsch K Ostermann A Deutsch T Bley 2005 Coordinated development of yeast colonies: Experimental analysis of the adaptation to different nutrient concentrations-part 1 Eng Life Sci 5 115 124 1:CAS:528:DC%2BD2MXktFKju7w%3D 10.1002/elsc.200422459 (Pubitemid 40613418)
    • (2005) Engineering in Life Sciences , vol.5 , Issue.2 , pp. 115-124
    • Walther, T.1    Reinsch, H.2    Ostermann, K.3    Deutsch, A.4    Bley, T.5
  • 24
    • 22344455828 scopus 로고    scopus 로고
    • Physiological regulation of yeast cell death in multicellular colonies is triggered by ammonia
    • DOI 10.1083/jcb.200410064
    • L Vachova Z Palkova 2005 Physiological regulation of yeast cell death in multicellular colonies is triggered by ammonia J Cell Biol 169 711 717 1:CAS:528:DC%2BD2MXltVantbk%3D 10.1083/jcb.200410064 (Pubitemid 41002876)
    • (2005) Journal of Cell Biology , vol.169 , Issue.5 , pp. 711-717
    • Vachova, L.1    Palkova, Z.2
  • 25
    • 0030570932 scopus 로고    scopus 로고
    • A structured model for hyphal differentiation and penicillin production using Penicillium chrysogenum
    • 1:CAS:528:DyaK28Xks1Oru74%3D 10.1002/(SICI)1097-0290(19960905)51: 5<558::AID-BIT8>3.3.CO;2-G
    • GC Paul CR Thomas 1996 A structured model for hyphal differentiation and penicillin production using Penicillium chrysogenum Biotechnol Bioeng 51 558 572 1:CAS:528:DyaK28Xks1Oru74%3D 10.1002/(SICI)1097-0290(19960905)51:5<558::AID- BIT8>3.3.CO;2-G
    • (1996) Biotechnol Bioeng , vol.51 , pp. 558-572
    • Paul, G.C.1    Thomas, C.R.2
  • 26
    • 0343923410 scopus 로고    scopus 로고
    • Simulation of penicillin production in fed-batch cultivations using a morphologically structured model
    • DOI 10.1002/(SICI)1097-0290(19971220)56:6<593::AID-BIT1>3.0.CO;2-I
    • TC Zangirolami CL Johansen J Nielsen SB Jorgensen 1997 Simulation of penicillin production in fed-batch cultivations using a morphologically structured model Biotechnol Bioeng 56 593 604 1:CAS:528:DyaK2sXnsFGqsbk%3D 10.1002/(SICI)1097-0290(19971220)56:6<593::AID-BIT1>3.0.CO;2-I (Pubitemid 27505970)
    • (1997) Biotechnology and Bioengineering , vol.56 , Issue.6 , pp. 593-604
    • Zangirolami, T.C.1    Johansen, C.L.2    Nielsen, J.3    Jorgensen, S.B.4
  • 27
    • 3042565794 scopus 로고
    • Cell and cell debris removal: Centrifugation and crossflow filtration
    • G. Stephanopoulos (eds). VCH Weinheim
    • Datar RV, Rosen C-G (1993) Cell and cell debris removal: centrifugation and crossflow filtration. In: Stephanopoulos G (ed) Bioprocessing, vol 3. VCH, Weinheim, pp 472-503
    • (1993) Bioprocessing , vol.3 , pp. 472-503
    • Datar, R.V.1    Rosen, C.-G.2


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