-
1
-
-
0004034258
-
-
Agriculture and Agri-Food Canada, 3rd ed. NRC Research Press, Ottawa, Ontario, Canada
-
Agriculture and Agri-Food Canada. 1998. The Canadian System of Soil Classification, 3rd ed. NRC Research Press, Ottawa, Ontario, Canada.
-
(1998)
The Canadian System of Soil Classification
-
-
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
33144468213
-
Degradation of 4-chloro-2-methylphenoxyacetic acid in top- and subsoil is quantitatively linked to the class III tfdA gene
-
Bælum, J., T. Henriksen, H. C. B. Hansen, and C. S. Jacobsen. 2006. Degradation of 4-chloro-2-methylphenoxyacetic acid in top- and subsoil is quantitatively linked to the class III tfdA gene. Appl. Environ. Microbiol. 72:1476-1486.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 1476-1486
-
-
Bælum, J.1
Henriksen, T.2
Hansen, H.C.B.3
Jacobsen, C.S.4
-
4
-
-
44849121863
-
Direct analysis of tfdA gene expression by indigenous bacteria in phenoxy acid amended agricultural soil
-
Bælum, J., M. H. Nicolaisen, W. E. Holben, B. W. Strobel, J. Sørensen, and C. S. Jacobsen. 2008. Direct analysis of tfdA gene expression by indigenous bacteria in phenoxy acid amended agricultural soil. ISME J. 2:677-687.
-
(2008)
ISME J.
, vol.2
, pp. 677-687
-
-
Bælum, J.1
Nicolaisen, M.H.2
Holben, W.E.3
Strobel, B.W.4
Sørensen, J.5
Jacobsen, C.S.6
-
5
-
-
0034769121
-
Expression of prostaglandin D synthetase during development in the mouse testis
-
Baker, P. J., and P. J. O'Shaughnessy. 2001. Expression of prostaglandin D synthetase during development in the mouse testis. Reproduction 122:553-559.
-
(2001)
Reproduction
, vol.122
, pp. 553-559
-
-
Baker, P.J.1
O'shaughnessy, P.J.2
-
6
-
-
0033598832
-
Global GacA-steered control of cyanide and exoprotease production in Pseudomonas fluorescens involves specific ribosome binding sites
-
Blumer, C., S. Heeb, G. Pessi, and D. Haas. 1999. Global GacA-steered control of cyanide and exoprotease production in Pseudomonas fluorescens involves specific ribosome binding sites. Proc. Natl. Acad. Sci. U. S. A. 96:14073-14078.
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 14073-14078
-
-
Blumer, C.1
Heeb, S.2
Pessi, G.3
Haas, D.4
-
7
-
-
0031470882
-
Rapid and direct method for extraction of RNA from soil
-
Borneman, J., and E. W. Triplett. 1997. Rapid and direct method for extraction of RNA from soil. Soil Biol. Biochem. 29:1621-1624.
-
(1997)
Soil Biol. Biochem.
, vol.29
, pp. 1621-1624
-
-
Borneman, J.1
Triplett, E.W.2
-
8
-
-
34247645532
-
Universal reference method for real-time PCR gene expression analysis of preimplantation embryos
-
Bower, N. I., R. J. Moser, J. R. Hill, and S. A. Lehnert. 2007. Universal reference method for real-time PCR gene expression analysis of preimplantation embryos. Biotechniques 42:199-206.
-
(2007)
Biotechniques
, vol.42
, pp. 199-206
-
-
Bower, N.I.1
Moser, R.J.2
Hill, J.R.3
Lehnert, S.A.4
-
9
-
-
0242668357
-
MRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soil
-
Bürgmann, H., F. Widmer, W. V. Sigler, and J. Zeyer. 2003. mRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soil. Appl. Environ. Microbiol. 69: 1928-1935.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 1928-1935
-
-
Bürgmann, H.1
Widmer, F.2
Sigler, W.V.3
Zeyer, J.4
-
10
-
-
0033775615
-
Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays
-
Bustin, S. A. 2000. Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. J. Mol. Endocrinol. 25:169-193.
-
(2000)
J. Mol. Endocrinol.
, vol.25
, pp. 169-193
-
-
Bustin, S.A.1
-
11
-
-
21344458602
-
Quantitative real-time RT-PCR-a perspective
-
Bustin, S. A., V. Benes, T. Nolan, and M. W. Pfaffl. 2005. Quantitative real-time RT-PCR-a perspective. J. Mol. Endocrinol. 34:597-601.
-
(2005)
J. Mol. Endocrinol.
, vol.34
, pp. 597-601
-
-
Bustin, S.A.1
Benes, V.2
Nolan, T.3
Pfaffl, M.W.4
-
12
-
-
26844512816
-
Real-time reverse transcription PCR (qRT-PCR) and its potential use in clinical diagnosis
-
Bustin, S. A., and R. Mueller. 2005. Real-time reverse transcription PCR (qRT-PCR) and its potential use in clinical diagnosis. Clin. Sci. 109:365-379.
-
(2005)
Clin. Sci.
, vol.109
, pp. 365-379
-
-
Bustin, S.A.1
Mueller, R.2
-
13
-
-
0018725851
-
The relationship between growth phase and cyanogenesis in Pseudomonas aeruginosa
-
Castric, P. A., R. F. Ebert, and K. F. Castric. 1979. The relationship between growth phase and cyanogenesis in Pseudomonas aeruginosa. Curr. Microbiol. 2:287-292.
-
(1979)
Curr. Microbiol.
, vol.2
, pp. 287-292
-
-
Castric, P.A.1
Ebert, R.F.2
Castric, K.F.3
-
14
-
-
0037343190
-
Phenazines and their role in biocontrol by Pseudomonas bacteria
-
Chin-A-Woeng, T. F. C., G. V. Bloemberg, and B. J. J. Lugtenberg. 2003. Phenazines and their role in biocontrol by Pseudomonas bacteria. New Phytol. 157:503-523.
-
(2003)
New Phytol.
, vol.157
, pp. 503-523
-
-
Chin-A-Woeng, T.F.C.1
Bloemberg, G.V.2
Lugtenberg, B.J.J.3
-
15
-
-
77949401095
-
A versatile internal control for use as DNA in real-time PCR and as RNA in real-time reverse transcription PCR assays
-
Deer, D. M., K. A. Lampel, and N. González-Escalona. 2010. A versatile internal control for use as DNA in real-time PCR and as RNA in real-time reverse transcription PCR assays. Lett. Appl. Microbiol. 50:366-372.
-
(2010)
Lett. Appl. Microbiol.
, Issue.50
, pp. 366-372
-
-
Deer, D.M.1
Lampel, K.A.2
González-Escalona, N.3
-
16
-
-
41449100793
-
Improved normalization of real-time reverse transcriptase polymerase chain reaction data using an external RNA control
-
Ellefsen, S., K.-O. Stensløkken, G. K. Sandvik, T. A. Kristensen, and G. E. Nilsson. 2008. Improved normalization of real-time reverse transcriptase polymerase chain reaction data using an external RNA control. Anal. Biochem. 376:83-93.
-
(2008)
Anal. Biochem.
, vol.376
, pp. 83-93
-
-
Ellefsen, S.1
Stensløkken, K.-O.2
Sandvik, G.K.3
Kristensen, T.A.4
Nilsson, G.E.5
-
17
-
-
66249088328
-
Detection of live Salmonella sp. cells in produce by a TaqMan-Based quantitative reverse transcriptase realtime PCR targeting invA mRNA
-
González-Escalona, N., T. S. Hammack, M. Russel, A. P. Jacobson, A. J. De Jesús, E. W. Brown, and K. A. Lampel. 2009. Detection of live Salmonella sp. cells in produce by a TaqMan-Based quantitative reverse transcriptase realtime PCR targeting invA mRNA. Appl. Environ. Microbiol. 75:3714-3720.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 3714-3720
-
-
González-Escalona, N.1
Hammack, T.S.2
Russel, M.3
Jacobson, A.P.4
De Jesús, A.J.5
Brown, E.W.6
Lampel, K.A.7
-
18
-
-
0034468557
-
Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
-
Griffiths, R. I., A. S. Whiteley, A. G. O'Donnell, and M. J. Bailey. 2000. Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl. Environ. Microbiol. 66:5488-5491.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 5488-5491
-
-
Griffiths, R.I.1
Whiteley, A.S.2
O'donnell, A.G.3
Bailey, M.J.4
-
19
-
-
1842614298
-
Quantification of gene expression in methanotrophs by competitive reverse transcription-polymerase chain reaction
-
Han, J.-I., and J. D. Semrau. 2004. Quantification of gene expression in methanotrophs by competitive reverse transcription-polymerase chain reaction. Environ. Microbiol. 6:388-399.
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 388-399
-
-
Han, J.-I.1
Semrau, J.D.2
-
20
-
-
0033858708
-
Methods for assessing the composition and diversity of soil microbial communities
-
Hill, G. T., N. A. Mitkowski, L. Aldrich-Wolfe, L. R. Emele, D. D. Jurkonie, A. Ficke, S. Maldonado-Ramirez, S. T. Lynch, and E. B. Nelson. 2000. Methods for assessing the composition and diversity of soil microbial communities. Appl. Soil Ecol. 15:25-36.
-
(2000)
Appl. Soil Ecol.
, vol.15
, pp. 25-36
-
-
Hill, G.T.1
Mitkowski, N.A.2
Aldrich-Wolfe, L.3
Emele, L.R.4
Jurkonie, D.D.5
Ficke, A.6
Maldonado-Ramirez, S.7
Lynch, S.T.8
Nelson, E.B.9
-
21
-
-
34047260936
-
Quantification of mRNA in Salmonella sp. seeded soil and chicken manure using magnetic capture hybridization RT-PCR
-
Jacobsen, C. S., and W. E. Holben. 2007. Quantification of mRNA in Salmonella sp. seeded soil and chicken manure using magnetic capture hybridization RT-PCR. J. Microbiol. Methods 69:315-321.
-
(2007)
J. Microbiol. Methods
, vol.69
, pp. 315-321
-
-
Jacobsen, C.S.1
Holben, W.E.2
-
22
-
-
50249153660
-
Detection of viable Mycobacterium leprae in soil samples: Insights into possible sources of transmission of leprosy
-
Lavania, M., K. Katoch, V. M. Katoch, A. K. Gupta, D. S. Chauhan, R. Sharma, R. Gandhi, V. Chauhan, G. Bansal, P. Sachan, S. Sachan, V. S. Yadav, and R. Jadhav. 2008. Detection of viable Mycobacterium leprae in soil samples: insights into possible sources of transmission of leprosy. Infect. Genet. Evol. 8:627-631.
-
(2008)
Infect. Genet. Evol.
, vol.8
, pp. 627-631
-
-
Lavania, M.1
Katoch, K.2
Katoch, V.M.3
Gupta, A.K.4
Chauhan, D.S.5
Sharma, R.6
Gandhi, R.7
Chauhan, V.8
Bansal, G.9
Sachan, P.10
Sachan, S.11
Yadav, V.S.12
Jadhav, R.13
-
23
-
-
38549112329
-
Transcription dynamics of the functional tfdA gene during MCPA herbicide degradation by Cupriavidus necator AEO106 (pRO101) in agricultural soil
-
Nicolaisen, M. H., J. Bælum, C. S. Jacobsen, and J. Sørensen. 2008. Transcription dynamics of the functional tfdA gene during MCPA herbicide degradation by Cupriavidus necator AEO106 (pRO101) in agricultural soil. Environ. Microbiol. 10:571-579.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 571-579
-
-
Nicolaisen, M.H.1
Bælum, J.2
Jacobsen, C.S.3
Sørensen, J.4
-
24
-
-
64149114103
-
Transcriptional activity of antifungal metabolite-encoding genes phlD and hcnBC in Pseudomonas spp. using qRTPCR
-
Paulin, M. M., A. Novinscak, M. St-Arnaud, C. Goyer, N. J. DeCoste, J.-P. Privé, J. Owen, and M. Filion. 2009. Transcriptional activity of antifungal metabolite-encoding genes phlD and hcnBC in Pseudomonas spp. using qRTPCR. FEMS Microbiol. Ecol. 68:212-222.
-
(2009)
FEMS Microbiol. Ecol.
, vol.68
, pp. 212-222
-
-
Paulin, M.M.1
Novinscak, A.2
St-Arnaud, M.3
Goyer, C.4
Decoste, N.J.5
Privé, J.-P.6
Owen, J.7
Filion, M.8
-
25
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl, M. W. 2001. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29:e45.
-
(2001)
Nucleic Acids Res.
, vol.29
-
-
Pfaffl, M.W.1
-
26
-
-
0034694128
-
Effect of experimental treatment on housekeeping gene expression: Validation by real-time, quantitative RT-PCR
-
Schmittgen, T. D., and B. A. Zakrajsek. 2000. Effect of experimental treatment on housekeeping gene expression: validation by real-time, quantitative RT-PCR. J. Biochem. Biophys. Methods 46:69-81.
-
(2000)
J. Biochem. Biophys. Methods
, vol.46
, pp. 69-81
-
-
Schmittgen, T.D.1
Zakrajsek, B.A.2
-
27
-
-
0033974559
-
Autoinduction of 2,4-diacetylphloroglucinol biosynthesis in the biocontrol agent Pseudomonas fluorescens CHA0 and repression by the bacterial metabolites salicylate and pyoluteorin
-
Schnider-Keel, U., A. Seematter, M. Maurhofer, C. Blumer, B. Duffy, C. Gigot-Bonnefoy, C. Reimmann, R. Notz, G. Défago, D. Haas, and C. Keel. 2000. Autoinduction of 2,4-diacetylphloroglucinol biosynthesis in the biocontrol agent Pseudomonas fluorescens CHA0 and repression by the bacterial metabolites salicylate and pyoluteorin. J. Bacteriol. 182:1215-1225.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 1215-1225
-
-
Schnider-Keel, U.1
Seematter, A.2
Maurhofer, M.3
Blumer, C.4
Duffy, B.5
Gigot-Bonnefoy, C.6
Reimmann, C.7
Notz, R.8
Défago, G.9
Haas, D.10
Keel, C.11
-
28
-
-
0036069298
-
RNA isolation from soil for bacterial community and functional analysis: Evaluation of different extraction and soil conservation protocols
-
Sessitsch, A., S. Gyamfi, N. Stralis-Pavese, A. Weilharter, and U. Pfeifer. 2002. RNA isolation from soil for bacterial community and functional analysis: evaluation of different extraction and soil conservation protocols. J. Microbiol. Methods 51:171-179.
-
(2002)
J. Microbiol. Methods
, vol.51
, pp. 171-179
-
-
Sessitsch, A.1
Gyamfi, S.2
Stralis-Pavese, N.3
Weilharter, A.4
Pfeifer, U.5
-
29
-
-
0026527458
-
Isolation of 2,4-diacetylphloroglucinol from a fluorescent pseudomonad and investigation of physiological parameters influencing its production
-
Shanahan, P., D. J. O'Sullivan, P. Simpson, J. D. Glennon, and F. O'Gara. 1992. Isolation of 2,4-diacetylphloroglucinol from a fluorescent pseudomonad and investigation of physiological parameters influencing its production. Appl. Environ. Microbiol. 58:353-358.
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 353-358
-
-
Shanahan, P.1
O'sullivan, D.J.2
Simpson, P.3
Glennon, J.D.4
O'gara, F.5
-
30
-
-
3242784271
-
Detection and quantification of gene expression in environmental bacteriology
-
Sharkey, F. H., I. M. Banat, and R. Marchant. 2004. Detection and quantification of gene expression in environmental bacteriology. Appl. Environ. Microbiol. 70:3795-3806.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 3795-3806
-
-
Sharkey, F.H.1
Banat, I.M.2
Marchant, R.3
-
31
-
-
0037227141
-
Exogenous reference RNA for normalization of real-time quantitative PCR
-
Smith, R. D., B. Brown, P. Ikonomi, and A. N. Schechter. 2003. Exogenous reference RNA for normalization of real-time quantitative PCR. Biotechniques 34:88-91.
-
(2003)
Biotechniques
, vol.34
, pp. 88-91
-
-
Smith, R.D.1
Brown, B.2
Ikonomi, P.3
Schechter, A.N.4
-
32
-
-
0037109753
-
Quantitative real-time reverse transcription polymerase chain reaction: Normalization to rRNA or single housekeeping genes is inappropriate for human tissue biopsies
-
Tricarico, C., P. Pinzani, S. Bianchi, M. Paglierani, V. Distante, M. Pazzagli, S. A. Bustin, and C. Orlando. 2002. Quantitative real-time reverse transcription polymerase chain reaction: normalization to rRNA or single housekeeping genes is inappropriate for human tissue biopsies. Anal. Biochem. 309: 293-300.
-
(2002)
Anal. Biochem.
, vol.309
, pp. 293-300
-
-
Tricarico, C.1
Pinzani, P.2
Bianchi, S.3
Paglierani, M.4
Distante, V.5
Pazzagli, M.6
Bustin, S.A.7
Orlando, C.8
-
33
-
-
0345195995
-
Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
-
von Wintzingerode, F., U. B. Göbel, and E. Stackebrandt. 1997. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21:213-229.
-
(1997)
FEMS Microbiol. Rev.
, vol.21
, pp. 213-229
-
-
Von Wintzingerode, F.1
Göbel, U.B.2
Stackebrandt, E.3
-
34
-
-
0033541685
-
MRNA quantification by real time TaqMan polymerase chain reaction: Validation and comparison with RNase protection
-
Wang, T., and M. J. Brown. 1999. mRNA quantification by real time TaqMan polymerase chain reaction: validation and comparison with RNase protection. Anal. Biochem. 269:198-201.
-
(1999)
Anal. Biochem.
, vol.269
, pp. 198-201
-
-
Wang, T.1
Brown, M.J.2
-
35
-
-
41549145885
-
Detection of bphAa gene expression of Rhodococcus sp. strain RHA1 in soil using a new method of RNA preparation from soil
-
Wang, Y., J. Shimodaira, T. Miyasaka, S. Morimoto, T. Oomori, N. Ogawa, M. Fukuda, and T. Fujii. 2008. Detection of bphAa gene expression of Rhodococcus sp. strain RHA1 in soil using a new method of RNA preparation from soil. Biosci. Biotechnol. Biochem. 72:694-701.
-
(2008)
Biosci. Biotechnol. Biochem.
, vol.72
, pp. 694-701
-
-
Wang, Y.1
Shimodaira, J.2
Miyasaka, T.3
Morimoto, S.4
Oomori, T.5
Ogawa, N.6
Fukuda, M.7
Fujii, T.8
-
36
-
-
0036028598
-
Microbial populations responsible for specific soil suppressiveness to plant pathogens
-
Weller, D. M., J. M. Raaijmakers, B. B. McSpadden Gardener, and L. S. Thomashow. 2002. Microbial populations responsible for specific soil suppressiveness to plant pathogens. Annu. Rev. Phytopathol. 40:309-348.
-
(2002)
Annu. Rev. Phytopathol.
, vol.40
, pp. 309-348
-
-
Weller, D.M.1
Raaijmakers, J.M.2
McSpadden Gardener, B.B.3
Thomashow, L.S.4
-
37
-
-
24944534978
-
Real-time PCR for mRNA quantitation
-
Wong, M. L., and J. F. Medrano. 2005. Real-time PCR for mRNA quantitation. Biotechniques 39:75-85.
-
(2005)
Biotechniques
, vol.39
, pp. 75-85
-
-
Wong, M.L.1
Medrano, J.F.2
-
38
-
-
33750324141
-
Real-time RT-PCR detection of bovine viral diarrhoea virus in whole blood using an external RNA reference
-
Young, N. J., C. J. Thomas, M. E. Collins, and J. Brownlie. 2006. Real-time RT-PCR detection of bovine viral diarrhoea virus in whole blood using an external RNA reference. J. Virol. Methods 138:218-222.
-
(2006)
J. Virol. Methods
, vol.138
, pp. 218-222
-
-
Young, N.J.1
Thomas, C.J.2
Collins, M.E.3
Brownlie, J.4
-
39
-
-
69949096465
-
Transcription level of messenger RNA per gene copy determined with dual-spike-in strategy
-
Zhang, Y., Z. Wei, Y.-Y. Li, Y. Chen, W. Shen, and C. Lu. 2009. Transcription level of messenger RNA per gene copy determined with dual-spike-in strategy. Anal. Biochem. 394:202-208.
-
(2009)
Anal. Biochem.
, vol.394
, pp. 202-208
-
-
Zhang, Y.1
Wei, Z.2
Li, Y.-Y.3
Chen, Y.4
Shen, W.5
Lu, C.6
|