Assessment of the genetic diversity among Glyptosternum maculatum, an endemic fish of Yarlung Zangbo River, Tibet, China using SSR markers

Biochemical Systematics and Ecology

Volumn 38, Issue 6, 2010, Pages 1116-1121

  Guo, Baoying ^a,b   Xie, Congxin ^b   Qi, Lili ^c   Qi, Pengzhi ^d   Wu, Changwen ^a   Abbas, Khalid ^e  

^a ZHEJIANG OCEAN UNIVERSITY   (China)

^b HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^c Quancheng Middle School   (China)

^d Zhejiang Big Ocean Science and Technology Limited Company   (China)

^e UNIVERSITY OF AGRICULTURE   (Pakistan)

Author keywords

Genetic diversity; Glyptosternum maculatum; Microsatellite

Indexed keywords

ALLELE; ENDEMIC SPECIES; GENETIC DIFFERENTIATION; GENETIC MARKER; HETEROZYGOSITY; MOLECULAR ANALYSIS; POPULATION STRUCTURE; TELEOST; VARIANCE ANALYSIS;

BRAHMAPUTRA RIVER; CHINA; LHASA RIVER; XIZANG;

GLYPTOSTERNON MACULATUM;

EID: 79251601290     PISSN: 03051978     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bse.2010.12.008     Document Type: Article

References (28)

1. Botstein D., White R.L., Skolnick M., Davis R.W. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 1980, 32(3):314-331.
2. CárdenasLeyla Silva Andrea X., Antonios Magoulas, Josefina Cabezas, Poulin Elie Patricio Ojeda F. Genetic population structure in the Chilean jack mackerel, Trachurus murphyi (Nichols) across the South-eastern Pacific Ocean. Fish. Res. 2009, 100:109-115.
3. Cheng Q.T., Zheng B.S. Systematic Synopsis of Chinese Fishes 1987, Science Press, Beijing, (in Chinese)213-214.
4. Chu X.L., Zheng B.S., Dai D.Y. Fauna Sinica, Class Teleostei, Siluriformes 1999, Science Press, Beijing, (in Chinese).
5. Estoup A., Rousset F., Michalakis Y., Cornuet J.M., Adriamanga M., Guyomard R. Comparative analysis of microsatellite and allozyme markers: a case study investigating microgeographic differentiation in brown trout Salmo trutta L. Mol. Ecol. 1998, 7:339-340.
6. Excoffier L., Smouse P.E., Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992, 131:479-491.
7. Fishery Bureau in Tibet Municipality 1995, Chinese Agriculture Press, Beijing, pp. 10-13, 134-136 (in Chinese).
8. Gold J.R., Jobity A.M.C., Saillant E., Renshaw M.A. Population structure of carite (Scomberomorus brasiliensis) in waters offshore of Trinidad and northern Venezuela. Fish. Res. 2010, 103:30-39.
9. Guo B.Y., Xie C., He S., Abbas K., Wang H., Xiong D., Zhang H., Tong X. Analysis of genetic diversity in G. maculatum (Sisoridae, Siluriformes) populations with AFLP markers. Environ. Biol. Fish 2009, 85:201-206.
10. Hartl D.L., Clark A.G. Principles of Population Genetics 1997, Sinauer Associates, Inc., Sunderland MA. third ed.
11. Hora S.L., Silas E.G. Evolution and distribution of glyptosternoid fishes of the family Sisoridae (order: Siluridae). Proc. Natl. Inst. Sci. 1952, 18:309-322.
12. Kasapidis P., Magoulas A. Development and application of microsatellite markersto address the population structure of the horse mackerel Trachurus trachurus. Fish. Res. 2008, 89:132-135.
13. Kumar S., Tamura K., Nei M. MEGA 3: Integrated software for molecular Evolutionary genetics analysis and sequence alignment. Brief Bioinform. 2004, 5:150-163.
14. Liu Z.J., Cordes J.F. DNA marker technologies and their applications in aquaculture genetics. Aquaculture 2004, 238:1-37.
15. Michalakis Y., Excoffier L.A. A genetic estimation of population subdivision using distances between alleles with special reference to microsatellite loci. Genetics 1996, 142:1061-1064.
16. Mickett K., Morton C., Feng J., Li P., Simmons M., Cao D., Dunhan R.A., Liu Z. Assessing genetic diversity of domestic populations of channel catfish (Ictalurus punctatus) in Alabama using AFLP markers. Aquaculture 2003, 228:91-105.
17. Nei M. Genetic distance between populations. Am. Nat. 1972, 106:283-292.
18. Regan C.T. Descriptions of five new cyprinid fishes from Lhasa, Tibet, collected by Captain HJ Waller. Am. Mag. Nat. Hist. 1905, 1(7):185-188.
19. Revaldaves E., Pereira L.H.G., Foresti F., Oliveira C. Isolation and characterization of microsatellite loci in Pseudoplatystoma corruscans (Siluriformes: Pimelodidae) and cross-species amplification. Mol. Ecol. Notes 2005, 5:463-465.
20. Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning: a Laboratory Manual 1989, Cold Spring Harbor Laboratory Press, New York.
21. Schneider S., Roessli D., Excoffier L. Arlequin Version 3.11. A Software for Population Genetics Data Analysis. Genetics and Biometry Laboratory 2006, University of Geneva, Switzerland.
22. Tautz D. Hyper variability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res. 1989, 17:6463-6471.
23. Watanabe K., Watanabe T., Nishida M. Isolation and characterization of microsatellite loci from the endangered bagrid catfish, Pseudobagrus ichikawai. Mol. Ecol. Notes 2001, 1:61-64.
24. Weber J.L., May P.E. Abundant class of human DNA polymorphisms, which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 1989, 44:388-396.
25. Wright J.M., Bentzen P. Microsatellites: genetic markers for the future. Rev. Fish Biol. Fish 1994, 4:384-388.
26. Wu X., He M. The Sisoridae fishes in Tiebet. Oceanologia et Limnologia Sinica 1981, 12(1):74-79. (in Chinese).
27. Xue, Q., 2005. Genetic diversity analysis of mitochondrial DNA in Glyptosternum maculatum. Dissertation, Wuhan: Huazhong Agriculture University (in Chinese).
28. Yeh F.C., Boyle T.J.B. Population genetic analysis of co-dominant and dominant markers and quantitative traits. Belg. J. Bot. 1997, 129:157.