Temporal and spatial regulation of gene expression during asexual development of Neurospora crassa

Genetics

Volumn 186, Issue 4, 2010, Pages 1217-1230

  Greenwald, Charles J ^a   Kasuga, Takao ^b,c   Glass, N Louise ^b   Shaw, Brian D ^a   Ebboled, Daniel J ^a   Wilkinson, Heather H ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACONIDIATE 2; CELL MEMBRANE PROTEIN; CYCLIC AMP; CYCLIC AMP PHOSPHODIESTERASE; FUNGAL PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

ALLELE; ARTICLE; ASCOMYCETES; ASEXUAL REPRODUCTION; FUNGAL GENOME; FUNGUS; FUNGUS GROWTH; GENE DELETION; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENE LOCUS; GENETIC TRANSCRIPTION; MYCELIUM; NEUROSPORA CRASSA; NONHUMAN; PEZIZOMYCOTINA; PHENOTYPE; PHYSIOLOGY; PRIORITY JOURNAL; SIGNAL TRANSDUCTION; SPOROGENESIS;

FUNGAL PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; NEUROSPORA CRASSA; REPRODUCTION, ASEXUAL; SPORES, FUNGAL;

FUNGI; MYCELIUM (GENUS); NEUROSPORA CRASSA; PEZIZOMYCOTINA;

EID: 79251558424     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.110.121780     Document Type: Article

References (67)

1. AGUIRRE, J., and W. HANSBERG, 1986 Oxidation of Neurospora crassa glutamine synthetase. J. Bacteriol. 166: 1040-1045.
2. AGUIRRE, J., R. RODRIGUEZ and W. HANSBERG, 1989 Oxidation of Neurospora crassa NADP-specific glutamate dehydrogenase by activated oxygen species. J. Bacteriol. 171: 6243-6250.
3. AGUIRRE, J., W. HANSBERG and R. NAVARRO, 2006 Fungal responses to reactive oxygen species. Med. Mycol. 44: 101-107.
4. BAILEY, L. A., and D. J. EBBOLE, 1998 The fluffy gene of Neurospora crassa encodes a Gal4p-Type C6 zinc cluster protein required for conidial development. Genetics 148: 1813-1820.
5. BAILEY-SHRODE, L., and D. J. EBBOLE, 2004 The fluffy gene of Neurospora crassa is necessary and sufficient to induce conidiophore development. Genetics 166: 1741-1749.
6. BANNO, S., N. OCHIAI, R. NOGUCHI, M. KIMURA, I. YAMAGUCHI et al., 2005 A catalytic subunit of cyclic AMP-dependent protein kinase, PKAC-1, regulates asexual differentiation in Neurospora crassa. Genes Genet. Syst. 80: 25-34.
7. BELDEN, W. J., L. F. LARRONDO, A. C. FROEHLICH, M. SHI, C.-H. CHEN et al., 2007 The band mutation in Neurospora crassa is a dominant allele of ras-1 implicating RAS signaling in circadian output. Genes Dev. 21: 1494-1505.
8. BERLIN, V., and C. YANOFSKY, 1985a Isolation and characterization of genes differentially expressed during conidiation of Neurospora crassa. Mol. Cell. Biol. 5: 849-855.
9. BERLIN, V., and C. YANOFSKY, 1985b Protein changes during the asexual cycle of Neurospora crassa. Mol. Cell. Biol. 5: 839-848.
10. BROWN, R. S., 2005 Zinc finger proteins: getting a grip on RNA. Curr. Opin. Struct. Biol. 15: 94-98.
11. CÁRDENAS, M. E., and W. HANSBERG, 1984 Glutamine metabolism during aerial mycelium growth of Neurospora crassa. J. Gen. Microbiol. 130: 1733-1741.
12. CARROLL, A. M., J. A. SWEIGARD and B. S. VALENT, 1994 Improved vectors for selecting resistance to hygromycin. Fung. Genet. Newslett. 41: 20-21.
13. COLOT, H. V., G. PARK, G. E. TURNER, C. RINGELBERG, C. M. CREW et al., 2006 A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors. Proc. Natl. Acad. Sci. USA 103: 10352-10357.
14. COUX, O., K. TANAKA and A. L. GOLDBERG, 1996 Structure and functions of the 20S and 26S proteasomes. Annu. Rev. Biochem. 65: 801-847.
15. DAVIS, R. H., and F. J. DE SERRES, 1970 Genetic and microbiological research techniques for Neurospora crassa. Meth. Enzymol. 17A: 79-143.
16. 2+/phospholipid binding. J. Biol. Chem. 268: 26386-26390.
17. DAY, I., V. REDDY, G. SHAD ALI and A. REDDY, 2002 Analysis of EF-hand-containing proteins in Arabidopsis. Genome Biol. 3: 56.51-56.24.
18. DUNLAP, J. C., K. A. BORKOVICH, M. R. HENN, G. E. TURNER, M. S. SACHS et al., 2007 Enabling a community to dissect an organism: overview of the Neurospora functional genomics project. Adv. Genet. 57: 49-96.
19. EBBOLE, D. J., and M. S. SACHS, 1990 A rapid and simple method for isolation of Neurospora crassa homokaryons using microconidia. Fung. Genet. Newslett. 37: 17-18.
20. FORMENT, J. V., M. FLIPPHI, D. RAMON, L. VENTURA and A. P. MACCABE, 2006 Identification of the mstE gene encoding a glucose-inducible, low affinity glucose transporter in Aspergillus nidulans. J. Biol. Chem. 281: 8339-8346.
21. GAMSJAEGER, R., C. K. LIEW, F. E. LOUGHLIN, M. CROSSLEY and J. P. MACKAY, 2007 Sticky fingers: zinc-fingers as protein-recognition motifs. Trends Biochem. Sci. 32: 63-70.
22. GARNJOBST, L., and E. L. TATUM, 1967 A survey of new morphological mutants in Neurospora crassa. Genetics 57: 579-604.
23. 2+ signalling to membrane dynamics. Nat. Rev. Mol. Cell Biol. 6: 449-461.
24. HALL, T. M. T., 2005 Multiple modes of RNA recognition by zinc finger proteins. Curr. Opin. Struct. Biol. 15: 367-373.
25. HASUNUMA, K., and Y. SHINOHARA, 1985 Characterization of cpd-1 and cpd-2 mutants which affect the activity of orthophosphate regulated cyclic phosphodiesterase in Neurospora. Curr. Genet. 10: 197-203.
26. i protein and adenylyl cyclase in regulating development and stress responses in Neurospora crassa. Eukaryotic Cell 1: 634-642.
27. KASUGA, T., and N. L. GLASS, 2008 Dissecting colony development of Neurospora crassa using mRNA profiling and comparative genomics approaches. Eukaryot. Cell 7: 1549-1564.
28. KASUGA, T., G. MANNHAUPT and N. L. GLASS, 2009 Relationship between phylogenetic distribution and genomic features in Neurospora crassa. PLoS ONE 4: e5286.
29. KAYS, A. M., and K. A. BORKOVICH, 2004 Severe impairment of growth and differentiation in a Neurospora crassa mutant lacking all geterotrimeric Gα proteins. Genetics 166: 1229-1240.
30. KLEIN, C., and K. STRUHL, 1994 Protein kinase A mediates growth-regulated expression of yeast ribosomal protein genes by modulating RAP1 transcriptional activity. Mol. Cell. Biol. 14: 1920-1928.
31. KLUG, A., 1999 Zinc finger peptides for the regulation of gene expression. J. Mol. Biol. 293: 215-218.
32. LARA, M., L. BLANCO, M. CAMPOMANES, E. CALVA, R. PALACIOS et al., 1982 Physiology of ammonium assimilation in Neurospora crassa. J. Bacteriol. 150: 105-112.
33. LEE, K., and D. J. EBBOLE, 1998 Tissue-specific repression of starvation and stress responses of the Neurospora crassa con-10 gene is mediated by RCO1. Fungal Genet. Biol. 23: 269-278.
34. LEGGE, G. B., M. A. MARTINEZ-YAMOUT, D. M. HAMBLY, T. TRINH, B. M. LEE et al., 2004 ZZ domain of CBP: an unusual zinc finger fold in a protein interaction module. J. Mol. Biol. 343: 1081-1093.
35. LI, D., P. BOBROWICZ, H. H. WILKINSON and D. J. EBBOLE, 2005 A mitogen-activated protein kinase pathway essential for mating and contributing to vegetative growth in Neurospora crassa. Genetics 170: 1091-1104.
36. LINK, T. I., and R. T. VOEGELE, 2008 Secreted proteins of Uromyces fabae: similarities and stage specificity. Mol. Plant Pathol. 9: 59-66.
37. MATSUYAMA, S. S., R. E. NELSON and R. W. SIEGEL, 1974 Mutations specifically blocking differentiation of macroconidia in Neurospora crassa. Dev. Biol. 41: 278-287.
38. MEIKLEJOHN, C. D., and J. P. TOWNSEND, 2005 A Bayesian method for analysing spotted microarray data. Brief. Bioinformatics 6: 318-330.
39. MICHAN, S., F. LLEDIAS and W. HANSBERG, 2003 Asexual development is increased in Neurospora crassa cat-3- null mutant strains. Eukaryot. Cell 2: 798-808.
40. MILLER, R. K., and M. D. ROSE, 1998 Kar9p Is a novel cortical protein required for cytoplasmic microtubule orientation in yeast. J. Cell Biol. 140: 377-390.
41. MIRA, J.-P., T. DUBOIS, J.-P. OUDINET, S. LUKOWSKI, F. O. RUSSO-MARIE et al., 1997 Inhibition of cytosolic phospholipase A2 by annexin V in differentiated permeabilized HL-60 cells. J. Biol. Chem. 272: 10474-10482.
42. PANDEY, A., M. G. ROCA, N. D. READ and N. L. GLASS, 2004 Role of a mitogen-activated protein kinase pathway during conidial germination and hyphal fusion in Neurospora crassa. Eukaryot. Cell 3: 348-358.
43. PERKINS, D. D., A. RADFORD and M. S. SACHS, 2001 The Neurospora Compendium: Chromosomal Loci. Academic Press, San Diego, CA.
44. PETER, B. J., H. M. KENT, I. G. MILLS, Y. VALLIS, P. J. G. BUTLER et al., 2004 BAR domains as sensors of membrane curvature: the amphiphysin BAR structure. Science 303: 495-499.
45. PLESOFSKY-VIG, N., D. LIGHT and R. BRAMBL, 1983 Paedogenetic conidiation in Neurospora crassa. Exp. Mycol. 7: 283-286.
46. RERNGSAMRAN, P., M. B. MURPHY, S. A. DOYLE and D. J. EBBOLE, 2005 Fluffy, the major regulator of conidiation in Neurospora crassa, directly activates a developmentally regulated hydrophobin gene. Mol. Microbiol. 56: 282-297.
47. ROSENBERG, G., and M. L. PALL, 1979 Properties of two cyclic nucleotide-deficient mutants of Neurospora crassa. J. Bacteriol. 137: 1140-1144.
48. RUEPP, A., A. ZOLLNER, D. MAIER, K. ALBERMANN, J. HANI et al., 2004 The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res. 32: 5539-5545.
49. SARGENT, M. L., and D. O. WOODWARD, 1969 Genetic determinants of circadian rhythmicity in Neurospora. J. Bacteriol. 97: 861-866.
50. SASS, P., J. FIELD, J. NIKAWA, T. TODA and M. WIGLER, 1986 Cloning and characterization of the high-affinity cAMP phosphodiesterase of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci . USA 83: 9303-9307.
51. SPRINGER, M. L., 1993 Genetic control of fungal differentiation: the three sporulation pathways of Neurospora crassa. BioEssays 15: 365-374.
52. SPRINGER, M. L., and C. YANOFSKY, 1989 A morphological and genetic analysis of conidiophore development in Neurospora crassa. Genes Dev. 3: 559-571.
53. SPRINGER, M. L., and C. YANOFSKY, 1992 Expression of con genes along the three sporulation pathways of Neurospora crassa. Genes Dev. 6: 1052-1057.
54. SZETO, C. Y., G. S. LEUNG and H. S. KWAN, 2007 Le.MAPK and its interacting partner, Le.DRMIP, in fruiting body development in Lentinula edodes. Gene 393: 87-93.
55. TANG, J., A. MAXIMOV, O.-H. SHIN, H. DAI, J. RIZO et al., 2006 A complexin/synaptotagmin 1 switch controls fast synaptic vesicle exocytosis. Cell 126: 1175-1187.
56. TOLEDO, I., J. AGUIRRE and W. HANSBERG, 1986 Aerial growth in Neurospora crassa: characterization of an experimental model system. Exp. Mycol. 10: 114-125.
57. TOWNSEND, J., 2003 Multifactorial experimental design and the transitivity of ratios with spotted DNA microarrays. BMC Genomics 4: 41.
58. TURIAN, G., and D. E. BIANCHI, 1972 Conidiation in Neurospora. Bot. Rev. 38: 119.
59. TWUMASI-BOATENG, K., Y. YU, D. CHEN, F. N. GRAVELAT, W. C. NIERMAN et al., 2009 Transcriptional profiling identifies a role for BrlA in the response to nitrogen depletion and for StuA in the Regulation of Secondary Metabolite Clusters in Aspergillus fumigatus. Eukaryot. Cell 8: 104-115.
60. VISHWANATHA, J., and S. KUMBLE, 1993 Involvement of annexin II in DNA replication: evidence from cell-free extracts of Xenopus eggs. J. Cell. Sci. 105: 533-540.
61. WALTHER, T. C., J. H. BRICKNER, P. S. AGUILAR, S. BERNALES, C. PANTOJA et al., 2006 Eisosomes mark static sites of endocytosis. Nature 439: 998-1003.
62. XIE, X., H. H. WILKINSON, A. CORREA, Z. A. LEWIS, D. BELL-PEDERSEN et al., 2004 Transcriptional response to glucose starvation and functional analysis of a glucose transporter of Neurospora crassa. Fungal Genet. Biol. 41: 1104-1119.
63. YANG, Y. H., and T. SPEED, 2002 Design issues for cDNA microarray experiments. Nat. Rev. Genet. 3: 579-588.
64. YIN, Z., S. WILSON, N. C. HAUSER, H. TOURNU, J. D. HOHEISEL et al., 2003 Glucose triggers different global responses in yeast, depending on the strength of the signal, and transiently stabilizes ribosomal protein mRNAs. Mol. Microbiol. 48: 713-724.
65. YOUNG, M. E., T. S. KARPOVA, B. BRUGGER, D. M. MOSCHENROSS, G. K. WANG et al., 2002 The Sur7p family defines novel cortical domains in Saccharomyces cerevisiae, affects sphingolipid metabolism, and is involved in sporulation. Mol. Cell. Biol. 22: 927-934.
66. YOUSSAR, L., T. J. SCHMIDHAUSER and J. AVALOS, 2005 The Neurospora crassa gene responsible for the cut and ovc phenotypes encodes a protein of the haloacid dehalogenase family. Mol. Microbiol. 55: 828-838.
67. ZHANG, X., R. L. LESTER and R. C. DICKSON, 2004 Pil1p and Lsp1p negatively regulate the 3-phosphoinositide-dependent protein pinase-like kinase Pkh1p and downstream signaling pathways Pkc1p and Ypk1p. J. Biol. Chem. 279: 22030-22038.