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Volumn 77, Issue 1, 2011, Pages 65-75

Phylogeny of the Sepia pharaonis species complex (Cephalopoda: Sepiida) based on analyses of mitochondrial and nuclear DNA sequence data

Author keywords

[No Author keywords available]

Indexed keywords

CEPHALOPOD; COMMERCIAL SPECIES; CYTOCHROME; DATA SET; GENE FLOW; MITOCHONDRIAL DNA; PHYLOGENETICS; PHYLOGENY; SPECIES COMPLEX; TAXONOMY;

EID: 79251510213     PISSN: 02601230     EISSN: 14643766     Source Type: Journal    
DOI: 10.1093/mollus/eyq034     Document Type: Article
Times cited : (43)

References (54)
  • 1
    • 0033554627 scopus 로고    scopus 로고
    • Microsatellite analysis of genetic diversity in the squid Illex argentinus during a period of intensive fishing
    • ADCOCK, G.J., SHAW, P.W., RODHOUSE, P.G. & CARVALHO, G.R. 1999. Microsatellite analysis of genetic diversity in the squid Illex argentinus during a period of intensive fishing. Marine Ecology-Progress Series, 187: 171-178.
    • (1999) Marine Ecology-Progress Series , vol.187 , pp. 171-178
    • Adcock, G.J.1    Shaw, P.W.2    Rodhouse, P.G.3    Carvalho, G.R.4
  • 2
    • 0030796499 scopus 로고    scopus 로고
    • Restricted gene flow and evolutionary divergence between geographically separated populations of the antarctic octopus pareledone turqueti
    • ALLCOCK, A.L., BRIERLEY, A.S., THORPE, J.P. & RODHOUSE, P.G. 1997. Restricted gene flow and evolutionary divergence between geographically separated populations of the Antarctic octopus Pareledone turqueti. Marine Biology, 129: 97-102.
    • (1997) Marine Biology , vol.129 , pp. 97-102
    • Allcock, A.L.1    Brierley, A.S.2    Thorpe, J.P.3    Rodhouse, P.G.4
  • 3
    • 4444220955 scopus 로고    scopus 로고
    • Should we be worried about long-branch attraction in real data sets investigations using metazoan 18S rDNA
    • ANDERSON, F.E. & SWOFFORD, D.L. 2004. Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA. Molecular Phylogenetics and Evolution, 33: 440-451.
    • (2004) Molecular Phylogenetics and Evolution , vol.33 , pp. 440-451
    • Anderson, F.E.1    Swofford, D.L.2
  • 5
    • 0011713366 scopus 로고
    • Stock assessment of cuttlefish off the coast of the peoples democratic republic of yemen
    • AOYAMA, T. & NGUYEN, T. 1989. Stock assessment of cuttlefish off the coast of the People's Democratic Republic of Yemen. Journal of Shimonoseki University of Fisheries, 37: 61-112.
    • (1989) Journal of Shimonoseki University of Fisheries , vol.37 , pp. 61-112
    • Aoyama, T.1    Nguyen, T.2
  • 7
    • 77951878404 scopus 로고    scopus 로고
    • Determining the effects of stocking density and temperature on growth and food consumption in the pharaoh cuttlefish sepia pharaonis ehrenberg 1890
    • BARORD, G.J., KEISTER, K.N. & LEE, P.G. 2010. Determining the effects of stocking density and temperature on growth and food consumption in the pharaoh cuttlefish, Sepia pharaonis, Ehrenberg 1890. Aquaculture International, 18: 271-283.
    • (2010) Aquaculture International , vol.18 , pp. 271-283
    • Barord, G.J.1    Keister, K.N.2    Lee, P.G.3
  • 8
    • 0032142804 scopus 로고    scopus 로고
    • The rhodopsin gene of the cuttlefish sepia officinalis: Sequence and spectral tuning
    • BELLINGHAM, J., MORRIS, A.G. & HUNT, D.M. 1998. The rhodopsin gene of the cuttlefish Sepia officinalis: sequence and spectral tuning. Journal of Experimental Biology, 201: 2299-2306.
    • (1998) Journal of Experimental Biology , vol.201 , pp. 2299-2306
    • Bellingham, J.1    Morris, A.G.2    Hunt, D.M.3
  • 9
    • 77649243408 scopus 로고    scopus 로고
    • When trees grow too long: Investigating the causes of highly inaccurate bayesian branch-length estimates
    • BROWN, J.M., HEDTKE, S.M., LEMMON, A.R. & LEMMON, E.M. 2010. When trees grow too long: investigating the causes of highly inaccurate Bayesian branch-length estimates. Systematic Biology, 59: 145-161.
    • (2010) Systematic Biology , vol.59 , pp. 145-161
    • Brown, J.M.1    Hedtke, S.M.2    Lemmon, A.R.3    Lemmon, E.M.4
  • 10
    • 38149080381 scopus 로고    scopus 로고
    • Contrasting demographic history and phylogeographical patterns in two indo-pacific gastropods
    • CRANDALL, E.D., FREY, M.A., GROSBERG, R.K. & BARBER, P.H. 2008. Contrasting demographic history and phylogeographical patterns in two Indo-Pacific gastropods. Molecular Ecology, 17: 611-626.
    • (2008) Molecular Ecology , vol.17 , pp. 611-626
    • Crandall, E.D.1    Frey, M.A.2    Grosberg, R.K.3    Barber, P.H.4
  • 11
    • 0000981275 scopus 로고
    • Developing model systems for molecular biogeography: Vicariance and interchange in marine invertebrates molecular ecology and evolution: Approaches and applications
    • B. Schierwater B. Streit G.P. Wagner & R. DeSalle eds Basel Switzerland
    • CUNNINGHAM, C.W. & COLLINS, T.C. 1994. Developing model systems for molecular biogeography: vicariance and interchange in marine invertebrates. In: Molecular ecology and evolution: approaches and applications (B. Schierwater, B. Streit, G.P. Wagner & R. DeSalle, eds), pp. 405-433. Birkhauser Verlad, Basel, Switzerland.
    • (1994) Birkhauser Verlad , pp. 405-433
    • Cunningham, C.W.1    Collins, T.C.2
  • 13
    • 0002408113 scopus 로고
    • The pleistocene equatorial barrier between the indian and pacific oceans and a likely cause for wallaces line pelagic biogeography
    • A.C. Pierrot-Bults S. van der Spoel B.J. Zahuranec & R.K. Johnson eds Paris France.
    • FLEMINGER, A. 1986. The Pleistocene equatorial barrier between the Indian and Pacific oceans and a likely cause for Wallace's Line. In: Pelagic biogeography (A.C. Pierrot-Bults, S. van der Spoel, B.J. Zahuranec & R.K. Johnson, eds), pp. 84-97. UNESCO Technical Papers in Marine Science, no. 49, Paris, France.
    • (1986) UNESCO Technical Papers in Marine Science , vol.49 , pp. 84-97
    • Fleminger, A.1
  • 14
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
    • FOLMER, O., BLACK, M., HEOH, W., LUTZ, R. & VRIJENHOEK, R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3: 294-299.
    • (1994) Molecular Marine Biology and Biotechnology , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Heoh, W.3    Lutz, R.4    Vrijenhoek, R.5
  • 15
    • 0032526473 scopus 로고    scopus 로고
    • Maturation fecundity and seasonality of reproduction of two commercially valuable cuttlefish sepia pharaonis and S. dollfusi in the suez canal
    • GABR, H.R., HANLON, R.T., HANAFY, M.H. & EL-ETREBY, S.G. 1998. Maturation, fecundity and seasonality of reproduction of two commercially valuable cuttlefish, Sepia pharaonis and S. dollfusi, in the Suez Canal. Fisheries Research, 36, 99-115.
    • (1998) Fisheries Research , vol.36 , pp. 99-115
    • Gabr, H.R.1    Hanlon, R.T.2    Hanafy, M.H.3    El-Etreby, S.G.4
  • 16
    • 0000921966 scopus 로고
    • The preservation of the shells of sepia in the middle miocene of malta
    • HEWITT, R. & PEDLEY, H. 1978. The preservation of the shells of Sepia in the middle Miocene of Malta. Proceedings of the Geologists' Association, 89: 227-237.
    • (1978) Proceedings of the Geologists Association , vol.89 , pp. 227-237
    • Hewitt, R.1    Pedley, H.2
  • 17
    • 0345530902 scopus 로고    scopus 로고
    • Molecular and morphological analyses of the cuttlefish sepia apama indicate a complex population structure
    • KASSAHN, K.S., DONNELLAN, S.C., FOWLER, A.J., HALL, K.C., ADAMS, M. & SHAW, P.W. 2003. Molecular and morphological analyses of the cuttlefish Sepia apama indicate a complex population structure. Marine Biology, 143: 947-962.
    • (2003) Marine Biology , vol.143 , pp. 947-962
    • Kassahn, K.S.1    Donnellan, S.C.2    Fowler, A.J.3    Hall, K.C.4    Adams, M.5    Shaw, P.W.6
  • 19
    • 0012450640 scopus 로고    scopus 로고
    • A synopsis of sepiidae in australian waters cephalopoda: Sepioidea
    • LU, C.C. 1998. A synopsis of Sepiidae in Australian waters (Cephalopoda: Sepioidea). Smithsonian Contributions to Zoology, 586: 159-190.
    • (1998) Smithsonian Contributions to Zoology , vol.586 , pp. 159-190
    • Lu, C.C.1
  • 20
    • 38449093214 scopus 로고    scopus 로고
    • Phylogenetic systematics and biogeography of hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy
    • McGUIRE, J.A., WITT, C.C., ALTSHULER, D.L. & REMSEN, J.V. 2007. Phylogenetic systematics and biogeography of hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy. Systematic Biology, 56: 837-856.
    • (2007) Systematic Biology , vol.56 , pp. 837-856
    • Mcguire, J.A.1    Witt, C.C.2    Altshuler, D.L.3    Remsen, J.V.4
  • 22
    • 72049096137 scopus 로고    scopus 로고
    • Cryptic failure of partitioned bayesian phylogenetic analyses: Lost in the land of long trees
    • MARSHALL, D.C. 2010. Cryptic failure of partitioned Bayesian phylogenetic analyses: lost in the land of long trees. Systematic Biology, 59: 108-117.
    • (2010) Systematic Biology , vol.59 , pp. 108-117
    • Marshall, D.C.1
  • 23
    • 0242487488 scopus 로고    scopus 로고
    • Performance-based selection of likelihood models for phylogeny estimation
    • MININ, V., ABDO, Z., JOYCE, P. & SULLIVAN, J. 2003. Performance-based selection of likelihood models for phylogeny estimation. Systematic Biology, 52: 674-683.
    • (2003) Systematic Biology , vol.52 , pp. 674-683
    • Minin, V.1    Abdo, Z.2    Joyce, P.3    Sullivan, J.4
  • 24
    • 0035782047 scopus 로고    scopus 로고
    • First multi-generation culture of the tropical cuttlefish sepia pharaonis ehrenberg 1831
    • MINTON, J.W., WALSH, L.S., LEE, P.G. & FORSYTHE, J.W. 2002. First multi-generation culture of the tropical cuttlefish Sepia pharaonis Ehrenberg, 1831. Aquaculture International, 9: 379-392.
    • (2002) Aquaculture International , vol.9 , pp. 379-392
    • Minton, J.W.1    Walsh, L.S.2    Lee, P.G.3    Forsythe, J.W.4
  • 25
    • 25844525503 scopus 로고    scopus 로고
    • A new species of cuttlefish sepia ramani sp nov class: Cephalopoda from tuticorin bay southeast coast of India
    • NEETHISELVAN, N. 2001. A new species of cuttlefish Sepia ramani sp. nov. (Class: Cephalopoda) from Tuticorin Bay, southeast coast of India. Indian Journal of Marine Sciences, 30: 81-86.
    • (2001) Indian Journal of Marine Sciences , vol.30 , pp. 81-86
    • Neethiselvan, N.1
  • 27
    • 1042302325 scopus 로고    scopus 로고
    • Enlightenment of old ideas from new investigations: More questions regarding the evolution of bacteriogenic light organs in squids
    • NISHIGUCHI, M.K., LOPEZ, J.E. & VON BOETZKY, S. 2004. Enlightenment of old ideas from new investigations: more questions regarding the evolution of bacteriogenic light organs in squids. Evolution and Development, 6: 41-49.
    • (2004) Evolution and Development , vol.6 , pp. 41-49
    • Nishiguchi, M.K.1    Lopez, J.E.2    Von Boetzky, S.3
  • 30
    • 84959812430 scopus 로고
    • Temporal congruence and cladistic analysis of biogeography and cospeciation
    • PAGE, R.D.M. 1990. Temporal congruence and cladistic analysis of biogeography and cospeciation. Systematic Zoology, 39: 205-226.
    • (1990) Systematic Zoology , vol.39 , pp. 205-226
    • Page, R.D.M.1
  • 31
    • 2342508911 scopus 로고
    • Clocks, clades and cospeciation: Comparing rates of evolution and timing of cospeciation events in host-parasite assemblages
    • PAGE, R.D.M. 1991. Clocks, clades and cospeciation: comparing rates of evolution and timing of cospeciation events in host-parasite assemblages. Systematic Zoology, 40: 188-198.
    • (1991) Systematic Zoology , vol.40 , pp. 188-198
    • Page, R.D.M.1
  • 32
    • 34249865501 scopus 로고    scopus 로고
    • Testing hypotheses of population structuring in the northeast atlantic ocean and mediterranean sea using the common cuttlefish sepia officinalis
    • PEREZ-LOSADA, M., NOLTE, M.J., CRANDALL, K.A. & SHAW, P.W. 2007. Testing hypotheses of population structuring in the Northeast Atlantic Ocean and Mediterranean Sea using the common cuttlefish Sepia officinalis. Molecular Ecology, 16: 2667-2679.
    • (2007) Molecular Ecology , vol.16 , pp. 2667-2679
    • Perez-Losada, M.1    Nolte, M.J.2    Crandall, K.A.3    Shaw, P.W.4
  • 33
    • 0035527410 scopus 로고    scopus 로고
    • Selecting the best-fit model of nucleotide substitution
    • POSADA, D. & CRANDALL, K.A. 2001. Selecting the best-fit model of nucleotide substitution. Systematic Biology, 50: 580-601.
    • (2001) Systematic Biology , vol.50 , pp. 580-601
    • Posada, D.1    Crandall, K.A.2
  • 34
    • 9644301241 scopus 로고    scopus 로고
    • Model selection and model averaging in phylogenetics: Advantages of akaike information criterion and bayesian approaches over likelihood ratio tests
    • POSADA, D. & BUCKLEY, T.R. 2004. Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Systematic Biology, 53: 793-808.
    • (2004) Systematic Biology , vol.53 , pp. 793-808
    • Posada, D.1    Buckley, T.R.2
  • 35
    • 0021030785 scopus 로고
    • Evolutionary disequilibrium among indo-pacific corals
    • POTTS, D.C. 1983. Evolutionary disequilibrium among Indo-Pacific corals. Bulletin of Marine Science, 33: 619-632.
    • (1983) Bulletin of Marine Science , vol.33 , pp. 619-632
    • Potts, D.C.1
  • 36
    • 0021603727 scopus 로고
    • Generation times and the quaternary evolution of reef-building corals
    • POTTS, D.C. 1984. Generation times and the Quaternary evolution of reef-building corals. Paleobiology, 10: 48-58.
    • (1984) Paleobiology , vol.10 , pp. 48-58
    • Potts, D.C.1
  • 38
    • 79251513314 scopus 로고    scopus 로고
    • Family sepiidae cephalopods of the world an annotated and illustrated catalogue of species known to date chambered nautiluses and sepioids nautilidae sepiidae sepiolidae sepiadariidae idiosepiidae and spirulidae
    • FAO Species Catalogue for Fishery Purposes P. Jereb & C.F. Roper eds Rome.
    • REID, A., JEREB, P. & ROPER, C.F. 2005. Family Sepiidae. In: Cephalopods of the world. An annotated and illustrated catalogue of species known to date. Volume 1. Chambered nautiluses and sepioids (Nautilidae, Sepiidae, Sepiolidae, Sepiadariidae, Idiosepiidae and Spirulidae. FAO Species Catalogue for Fishery Purposes (P. Jereb & C.F. Roper, eds), pp. 57-152. Food and Agricultural Organization of the United Nations, Rome.
    • (2005) Food and Agricultural Organization of the United Nations , vol.1 , pp. 57-152
    • Reid, A.1    Jereb, P.2    Roper, C.F.3
  • 41
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • RONQUIST, F. & HUELSENBECK, J.P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 42
  • 43
    • 2542435219 scopus 로고    scopus 로고
    • DNA markers indicate that distinct spawning cohorts and aggregations of patagonian squid Loligo gahi, do not represent genetically discrete subpopulations
    • SHAW, P.W., ARKHIPKIN, A.I., ADCOCK, G.J., BURNETT, W.J., CARVALHO, G.R., SCHERBICH, J.N. & VILLEGAS, P.A. 2004. DNA markers indicate that distinct spawning cohorts and aggregations of Patagonian squid, Loligo gahi, do not represent genetically discrete subpopulations. Marine Biology, 144: 961-970.
    • (2004) Marine Biology , vol.144 , pp. 961-970
    • Shaw, P.W.1    Arkhipkin, A.I.2    Adcock, G.J.3    Burnett, W.J.4    Carvalho, G.R.5    Scherbich, J.N.6    Villegas, P.A.7
  • 44
    • 0032957528 scopus 로고    scopus 로고
    • Subtle population structuring within a highly vagile marine invertebrate the veined squid loligo forbesi demonstrated with microsatellite DNA markers
    • SHAW, P.W., PIERCE, G.J. & BOYLE, P.R. 1999. Subtle population structuring within a highly vagile marine invertebrate, the veined squid Loligo forbesi, demonstrated with microsatellite DNA markers. Molecular Ecology, 8: 407-417.
    • (1999) Molecular Ecology , vol.8 , pp. 407-417
    • Shaw, P.W.1    Pierce, G.J.2    Boyle, P.R.3
  • 45
    • 0025525522 scopus 로고
    • Widely distributed pacific plate endemics and lowered sea-level
    • SPRINGER, V.G. & WILLIAMS, J.T. 1990. Widely distributed Pacific plate endemics and lowered sea-level. Bulletin of Marine Science, 47: 631-640.
    • (1990) Bulletin of Marine Science , vol.47 , pp. 631-640
    • Springer, V.G.1    Williams, J.T.2
  • 46
    • 26444567260 scopus 로고    scopus 로고
    • Molecular phylogeny of coleoid cephalopods mollusca: Cephalopoda using a multigene approach the effect of data partitioning on resolving phylogenies in a bayesian framework
    • STRUGNELL, J., NORMAN, M., JACKSON, J., DRUMMOND, A.J. & COOPER, A. 2005. Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) using a multigene approach; the effect of data partitioning on resolving phylogenies in a Bayesian framework. Molecular Phylogenetics and Evolution, 37: 426-441.
    • (2005) Molecular Phylogenetics and Evolution , vol.37 , pp. 426-441
    • Strugnell, J.1    Norman, M.2    Jackson, J.3    Drummond, A.J.4    Cooper, A.5
  • 48
    • 18044365469 scopus 로고    scopus 로고
    • Phylogenetic relationships among major species of japanese coleoid cephalopods mollusca: Cephalopoda using three mitochondrial DNA sequences
    • TAKUMIYA, M., KOBAYASHI, M., TSUNEKI, K. & FURUYA, H. 2005. Phylogenetic relationships among major species of Japanese coleoid cephalopods (Mollusca: Cephalopoda) using three mitochondrial DNA sequences. Zoological Science, 22: 147-155.
    • (2005) Zoological Science , vol.22 , pp. 147-155
    • Takumiya, M.1    Kobayashi, M.2    Tsuneki, K.3    Furuya, H.4
  • 49
    • 0034652508 scopus 로고    scopus 로고
    • Exploited marine invertebrates: Genetics and fisheries
    • THORPE, J.P., SOLE-CAVA, A.M. & WATTS, P.C. 2000. Exploited marine invertebrates: genetics and fisheries. Hydrobiologia, 420: 165-184.
    • (2000) Hydrobiologia , vol.420 , pp. 165-184
    • Thorpe, J.P.1    Sole-Cava, A.M.2    Watts, P.C.3
  • 50
    • 0036962557 scopus 로고    scopus 로고
    • Morphology and late quaternary sedimentation in the gulf of oman basin
    • UCHUPI, E., SWIFT, S.A. & ROSS, D.A. 2002. Morphology and late quaternary sedimentation in the Gulf of Oman Basin. Marine Geophysical Researches, 23: 185-208.
    • (2002) Marine Geophysical Researches , vol.23 , pp. 185-208
    • Uchupi, E.1    Swift, S.A.2    Ross, D.A.3
  • 51
    • 79251515513 scopus 로고    scopus 로고
    • Patterns of speciation and dispersal along continental coastlines and island arcs in the indo-west pacific turbinid gastropod genus lunella
    • WILLIAMS, S.T., APTE, D., OZAWA, T., KAGILIS, F. & NAKANO, T. Patterns of speciation and dispersal along continental coastlines and island arcs in the Indo-West Pacific turbinid gastropod genus Lunella. Evolution, in review.
    • Evolution in Review
    • Williams, S.T.1    Apte, D.2    Ozawa, T.3    Kagilis, F.4    Nakano, T.5
  • 52
    • 0036876165 scopus 로고    scopus 로고
    • The marine indo-west pacific break: Contrasting the resolving power of mitochondrial and nuclear genes
    • WILLIAMS, S.T., JARA, J., GOMEZ, E. & KNOWLTON, N. 2002. The marine Indo-West Pacific break: contrasting the resolving power of mitochondrial and nuclear genes. Integrative and Comparative Biology, 42: 941-952.
    • (2002) Integrative and Comparative Biology , vol.42 , pp. 941-952
    • Williams, S.T.1    Jara, J.2    Gomez, E.3    Knowlton, N.4
  • 53
    • 0028164866 scopus 로고
    • Genetic structure and distribution of photololigo spp in Australia
    • YEATMAN, J. & BENZIE, J.A. 1994. Genetic structure and distribution of Photololigo spp. in Australia. Marine Biology, 118: 79-87.
    • (1994) Marine Biology , vol.118 , pp. 79-87
    • Yeatman, J.1    Benzie, J.A.2
  • 54
    • 33745053844 scopus 로고    scopus 로고
    • Phylogeny of selected sepiidae mollusca cephalopoda on 12S 16S and COI sequences with comments on the taxonomic reliability of several morphological characters
    • YOSHIDA, M., TSUNEKI, K. & FURUYA, H. 2006. Phylogeny of selected Sepiidae (Mollusca, Cephalopoda) on 12S, 16S, and COI sequences, with comments on the taxonomic reliability of several morphological characters. Zoological Science, 23: 341-451.
    • (2006) Zoological Science , vol.23 , pp. 341-451
    • Yoshida, M.1    Tsuneki, K.2    Furuya, H.3


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