Genetic linkage maps of two interspecific grape crosses (Vitis spp.) used to localize quantitative trait loci for downy mildew resistance

Tree Genetics and Genomes

Volumn 7, Issue 1, 2011, Pages 153-167

  Moreira, Flavia M ^a   Madini, Alberto ^a,c   Marino, Rosanna ^a,d   Zulini, Luca ^a   Stefanini, Marco ^a   Velasco, Riccardo ^a   Kozma, Pal ^b   Grando, M Stella ^a  

^a RESEARCH AND INNOVATION CENTRE   (Italy)

^b FVM Szoleszeti es Boraszati Kutatointezete Kecskemet   (Hungary)

^c Università Cattolica del Sacro Cuore ^*  (Italy)

^d UNIVERSITÀ CATTOLICA DEL SACRO CUORE   (Italy)

Author keywords

Downy mildew; Genetic mapping; QTL analysis; Vitis sp

Indexed keywords

PERONOSPORACEAE; PLASMOPARA VITICOLA; VITACEAE; VITIS; VITIS AMURENSIS; VITIS RIPARIA; VITIS ROTUNDIFOLIA; VITIS VINIFERA;

EID: 78751648052     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-010-0322-x     Document Type: Article

References (58)

1. Adam-Blondon AF, Roux C, Claux D, Butterlin G, Merdinoglu D, This P (2004) Mapping 245 SSR markers on the Vitis vinifera genome: a tool for grape genetics. Theor Appl Genet 109: 1017-1027.
2. Allegre M, Daire X, Heloir MC, Trouvelot S, Mercier L, Adrian M, Pugin A (2007) Stomatal deregulation in Plasmopara viticola-infected grapevine leaves. New Phytol 173: 832-840.
3. Alleweldt G, Possingham JV (1988) Progress in grapevine breeding. Theor Appl Genet 75: 669-673.
4. Barker CL, Donald T, Pauquet J, Ratnaparkhe MB, Bouquet A, Adam-Blondon AF, Thomas MR, Dry I (2005) Genetic and physical mapping of the grapevine powdery mildew resistance gene, Run1, using a bacterial artificial chromosome library. Theor Appl Genet 111: 370-377.
5. Bellin D, Peressotti E, Merdinoglu D, Weidemann-Merdinoglu S, Adam-Blondon AF, Cipriani G, Morgante M, Testolin R, Di Gaspero G (2009) Resistance to Plasmopara viticola in grapevine 'Bianca' is controlled by a major dominant gene causing localised necrosis at the infection site. Theor Appl Genet. doi: 10. 1007/s00122-009-1167-2.
6. Bishop DT, Cannings C, Skolnick M, Williamson JA (1983) The number of polymorphic DNA clones required to map the human genome. In: Weir BC (ed) Statistical analysis of DNA sequence data. Marcel Dekker, New York, pp 181-200.
7. Bouquet A, Pauquet J, Adam-Blondon AF, Torregrosa L, Merdinoglu D, Wiedemann-Merdinoglu S (2000) Vers l'obtention de variétés de vigne résistantes à l'oidium et au mildou par les methodes conventionelles et biotechnologiques. Progrès Agric Vitic 117(18): 383-389.
8. Bowers JE, Dangl GS, Vignani R, Meredith CP (1996) Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis vinifera L.). Genome 39: 628-633.
9. Bowers JE, Dangl GS, Meredith CP (1999) Development and characterization of additional microsatellite DNA markers for grape. Am J Enol Vitic 50: 243-246.
10. Busam C, Kassemeyer HH, Matern U (1997) Characterization and expression of caffeoyl-Coenzyme A 3-O-methyltransferase proposed for the induced resistance response of Vitis vinifera L. Plant Physiol 11(5): 1039-1048.
11. Cadle Davidson LE (2008) Variation within and between Vitis species for foliar resistance to the downy mildew pathogen Plasmopara viticola. Plant Dis 92: 1577-1584.
12. Causse MA, Fulton TM, Cho YG, Ahn SN, Chunwongse J, Wu K, Xiao J, Yu Z, Ronald PM, Harrington SE, Second G, McCouch SR, Tanksley SD (1994) Satured molecular map of the rice genome based on an interspecific backcross population. Genetics 138: 1251-1274.
13. Chakravarti A, Lasher LK, Reefer JE (1991) A maximum likelihood method for estimating genome length using genetic linkage data. Genetics 128: 175-182.
14. Dalbò MA, Ye GN, Weeden NF, Steinkellner H, Sefc KM, Reisch BI (2000) Gene controlling sex in grapevines placed on a molecular marker-based genetic map. Genome 43: 333-340.
15. Di Gaspero G, Cipriani G (2003) Nucleotide binding site/leucine-rich repeats, Pto-like and receptor-like kinases related to disease resistance in grapevine. Mol Genet Genomics 269: 612-623.
16. Di Gaspero G, Cipriani G, Adam-Blondon A-F, Testolin R (2007) Linkage maps of grapevine displaying the chromosomal locations of 420 microsatellite markers and 82 markers for R-gene candidates. Theor Appl Genet 114: 1249-1263.
17. Díez-Navajas AM, Wiedemann-Merdinoglu S, Greif C, Merdinoglu D (2008) Non-host versus host resistance to the grapevine downy mildew, Plasmopara viticola, studied at the tissue level. Phytopathology 98: 776-780.
18. Eibach R, Diehl H, Alleweldt G (1989) Untersuchungen zur verebung von resistenzeigenschaften bei reben gegen oidium tuckeri, Plasmopara viticola, und Botrytis cinerea. Vitis 28: 209-228.
19. Fischer BM, Salakhutdinov I, Akkurt M, Eibach R, Edwards KJ, Töpfer R, Zyprian EM (2004) Quantitative trait locus analysis of fungal disease resistance factors on a molecular map of grapevine. Theor Appl Genet 108: 501-515.
20. Gerber S, Rodolphe F (1994) An estimation of the genome length of maritime pine (Pinus pinaster Ati). Theor Appl Genet 88: 289-292.
21. Grando MS, Bellin D, Edwards KJ, Pozzi C, Stefanini M, Velasco R (2003) Molecular linkage maps of Vitis vinifera L. and V. riparia Mchx. Theor Appl Genet 106: 1213-1224.
22. Grattapaglia D, Sederoff R (1994) Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross mapping strategy and RAPD markers. Genetics 137: 1121-1137.
23. Greenberg JT, Yao N (2004) The role and regulation of programmed cell death in plant-pathogen interactions. Cell Microbiol 6: 201-211.
24. Heath MC, Skalamera D (1997) Cellular interactions between plants and biotrophic fungal parasites. Adv Bot Res 24: 195-225.
25. Hulbert SH, Ilott TW, Legg EJ, Lincoln SE, Lander ES, Michelmore RW (1988) Genetic analysis of the fungus Bremia lactucae, using restriction fragment length polymorphisms. Genetics 120: 947-958.
26. Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P (2007) French-Italian public consortium for grapevine genome characterization: the grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449: 463-467.
27. Kortekamp A (2006) Expression analysis of defense-related genes in grapevine leaves after inoculation with a host and a non-host pathogen. Plant Physiol Biochem 44: 58-67.
28. Kortekamp A, Zyprian E (2003) Characterization of Plasmopara resistance in grapevine using in vitro plants. J Plant Physiol 160: 1393-1400.
29. Kortekamp A, Wind R, Zyprian E (1998) Investigation of the interaction of Plasmopara viticola with susceptible and resistant grapevine cultivars. J Plant Dis Protec 105: 475-488.
30. Kozma P, Dula T (2003) Inheritance of resistance to downy mildew and powdery mildew of hybrid family Muscadinia x V. vinifera x V. amurensis x Franco-American hybrid. Acta Hortic 603: 457-463.
31. Lander ES, Botstein D (1989) Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 185-199.
32. Lawton K, Uknes S, Friedrich L, Gaffney T, Alexander D, Goodman R, Metraux JP, Kessmann H, Ahlgoy P, Gutrella M et al (1993) The molecular biology of systemic acquired resistance. In: Fritig B, Legrand M (eds) Mechanisms of plant defense responses. Kluwer, Dordrecht, pp 422-432.
33. Levadoux L (1956) Les populations sauvages et cultivées de Vitis vinifera L. Ann Amélior Plant 6: 59-117.
34. Lodhi MA, Daly MJ, Ye GN, Weeden NF, Reisch BI (1995) A molecular marker based linkage map of Vitis. Genome 38: 786-794.
35. Marguerit E, Boury C, Manicki A, Donnart M, Butterlin G, Némorin A, Wiedemann-Merdinoglu S, Merdinoglu D, Ollat N, Decroocq S (2009) Genetic dissection of sex determinism, inflorescence morphology and downy mildew resistance in grapevine. Theor Appl Genet 118(7): 1261-1278.
36. Marino R, Sevini F, Madini A, Vecchione A, Pertot I, Dalla Serra A, Versini G, Velasco R, Grando MS (2003) QTL mapping for disease resistance and fruit quality in grape. Acta Hortic 603(2): 527-533.
37. Merdinoglu D, Wiedemann-Merdinoglu S, Coste P, Dumas V, Haetty S, Butterlin G, Greif C (2003) Genetic analysis of downy mildew resistance derived from Muscadinia rotundifolia. Acta Hortic 603: 451-456.
38. Merdinoglu D, Butterlin G, Bevilacqua L, Chiquet V, Adam-Blondon AF, Decroocq S (2005) Development and characterization of a large set of microsatellite markers in grapevine (Vitis vinifera L.) suitable for multiplex PCR. Mol Breed 15: 349-366.
39. Moroldo M, Paillard S, Marconi R, Fabrice L, Canaguier A, Cruaud C, De Berardinis V, Guichard C, Brunaud V, Le Clainche I, Scalabrin S, Testolin R, Di Gaspero G, Morgante M, Adam-Blondon AF (2008) A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance. BMC Plant Biol 8: 66.
40. Moser C, Segala C, Fontana P, Salakhudtinov I, Gatto P, Pindo M, Zyprian E, Toepfer R, Grando MS, Velasco R (2005) Comparative analysis of expressed sequence tags from different organs of Vitis vinifera L. Funct Integr Genomics 5(4): 208-217.
41. Musetti R, Vecchione A, Stringher L, Borselli S, Zulini L, Marzani C, D'Ambrosio M, Sanita di Toppi L, Pertot I (2006) Inhibition of sporulation and ultrastructural alterations of grapevine downy mildew by the endophytic fungus Alternaria alternata. Phytopathology 96(7): 689-698.
42. Paterson AH, de Verna JW, Lanini B, Tanksley SD (1990) Fine mapping of quantitative trait loci using selected overlapping recombinant chromosomes in an interspecific cross of tomato. Genetics 124: 735-742.
43. Pauquet J, Bouquet A, This P, Adam-Blondon AF (2001) Establishment of a local map of AFLP markers around the powdery mildew resistance gene Run1 in grapevine and assessment of their usefulness for marker-assisted selection. Theor Appl Genet 103: 1201-1210.
44. Polesani M, Desario F, Ferrarini A, Zamboni A, Pezzetti M, Kortekamp A, Polverari A (2008) cDNA-AFLP analysis of plant and pathogen genes expressed in grapevine infected with Plasmopara viticola. BMC Genomics 9: 142.
45. Riaz S, Dangl GS, Edwards KJ, Meredith CP (2004) A microsatellite marker based framework linkage map of Vitis vinifera L. Theor Appl Genet 108: 864-872.
46. Salmaso M, Malacarne G, Troggio M, Faes G, Stefanini M, Grando MS, Velasco R (2008) A grapevine (Vitis vinifera L.) genetic map integrating the position of 139 expressed genes. Theor Appl Genet 116: 1129-1143.
47. Sanguinetti CJ, Dias Neto E, Simpson AJG (1994) Rapid silver staining and recovery of PCR products separated on polyacrylamide gels. Biotechniques 17(5): 915-919.
48. Scott KD, Eggler P, Seaton G, Rossetto M, Ablett EM, Lee LS, Henry RJ (2000) Analysis of SSRs derived from grape ESTs. Theor Appl Genet 100: 723-726.
49. Sefc KM, Regner F, Turetschek E, Glössl J, Steinkellner H (1999) Identification of microsatellite sequences in Vitis riparia and their applicability for genotyping of different Vitis species. Genome 42: 367-373.
50. Sevini F, Marino R, Segala C, Grando MS (2003) Development and transferability of grape EST-SSR markers suitable for mapping in Vitis spp. In: XLVII Italian society of agricultural genetics-SIGA annual congress: proceedings, Verona, Italy, 24-27 September 2003: 5. 57. ISBN 88-900622-4-X.
51. Thomas MR, Scott NS (1993) Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence-tagged sites (STSs). Theor Appl Genet 86: 985-990.
52. Troggio M, Malacarne G, Coppola G, Segala C, Cartwright DA, Pindo M, Stefanini M, Mank R, Moroldo M, Morgante M, Grando MS, Velasco R (2007) A dense single-nucleotide polymorphism-based genetic linkage map of grapevine (Vitis vinifera L.) anchoring 'Pinot Noir' bacterial artificial chromosome contigs. Genetics 176: 2637-2650.
53. van Ooijen JW, Voorrips RE (2001) JoinMap® 3. 0, software for the calculation of genetic linkage maps. Plant Research International, Wageningen.
54. van Ooijen JW, Boer MP, Jansen RC, Maliepaard C (2002) MapQTL® 4. 0, software for the calculation of QTL positions on genetic maps. Plant Research International, Wageningen.
55. Velasco R, Zharkikh A, Troggio M, Cartwright DA, Cestaro A, Pruss D, Pindo M, FitzGerald LM, Vezzulli S, Reid J, Malacarne G, Iliev D, Coppola G, Wardell B, Micheletti D, Macalma T, Facci M, Mitchell JT, Perazzolli M, Eldredge G, Gatto P, Oyzerski R, Moretto M, Gutin N, Stefanini M, Chen Y, Segala C, Davenport C, Dematte L, Mraz A, Battilana J, Stormo K, Costa F, Tao Q, Si-Ammour A, Harkins T, Lackey A, Perbost C, Taillon B, Stella A, Solovyev V, Fawcett JA, Sterck L, Vandepoele K, Grando MS, Toppo S, Moser C, Lanchbury J, Bogden R, Skolnick M, Sgaramella V, Bhatnagar SK, Fontana P, Gutin A, van de Peer Y, Salamini F, Viola R (2007) A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS ONE, 2(12): e1326. http://dx. doi. org/10. 1371%2Fjournal. pone. 0001326.
56. Vezzulli S, Micheletti D, Riaz S, Pindo M, Viola R, This P, Walker MA, Troggio M, Velasco R (2008) A SNP transferability survey within the genus Vitis. BMC Plant Biol 16: 8-128.
57. Welter L, Gokturk-Baydar N, Akkurt M, Maul E, Eibach R, Topfer R, Zyprian EM (2007) Genetic mapping and localization of quantitative trait loci affecting fungal disease resistance and leaf morphology in grapevine (Vitis vinifera L). Mol Breed 20: 359-374.
58. Zhang J, Hausmann L, Eibach R, Welter LJ, Töpfer R, Zyprian EM (2009) A framework map from grapevine V3125 (Vitis vinifera 'Schiava grossa' x 'Riesling') x rootstock cultivar 'Börner' (Vitis riparia x Vitis cinerea) to localize genetic determinants of phylloxera root resistance. Theor Appl Genet. doi: 10. 1007/s00122-009-1107-1.