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Volumn 50, Issue 1, 2011, Pages 27-31

Contributions of the EMERALD project to assessing and improving microarray data quality

Author keywords

External standards; Meta analysis; Microarray data; Ontology; Protocols; Quality metrics; Standards

Indexed keywords

ARTICLE; DATA BASE; MICROARRAY ANALYSIS; QUALITY CONTROL;

EID: 78751637389     PISSN: 07366205     EISSN: 19409818     Source Type: Journal    
DOI: 10.2144/000113591     Document Type: Article
Times cited : (10)

References (26)
  • 1
    • 38949196698 scopus 로고    scopus 로고
    • Utilizing tiling microarrays for whole-genome analysis in plants
    • Gregory, B.D., J. Yazaki, and J.R. Ecker. 2008. Utilizing tiling microarrays for whole-genome analysis in plants. Plant J. 53:636-644.
    • (2008) Plant J , vol.53 , pp. 636-644
    • Gregory, B.D.1    Yazaki, J.2    Ecker, J.R.3
  • 2
    • 40849097774 scopus 로고    scopus 로고
    • Comparing whole genomes using DNA microarrays
    • Gresham, D., M.J. Dunham, and D. Botstein. 2008. Comparing whole genomes using DNA microarrays. Nat. Rev. Genet. 9:291-302.
    • (2008) Nat. Rev. Genet , vol.9 , pp. 291-302
    • Gresham, D.1    Dunham, M.J.2    Botstein, D.3
  • 3
    • 33644844520 scopus 로고    scopus 로고
    • Microar ray technology: Beyond transcript profiling and genotype analysis
    • Hoheisel, J.D. 2006. Microar ray technology: beyond transcript profiling and genotype analysis. Nat. Rev. Genet. 7:200-210.
    • (2006) Nat. Rev. Genet , vol.7 , pp. 200-210
    • Hoheisel, J.D.1
  • 4
    • 67349209853 scopus 로고    scopus 로고
    • Next-generation DNA sequencing techniques
    • Ansorge, W.J. 2009. Next-generation DNA sequencing techniques. Nat. Biotechnol. 25:195-203.
    • (2009) Nat. Biotechnol , vol.25 , pp. 195-203
    • Ansorge, W.J.1
  • 5
    • 32944460008 scopus 로고    scopus 로고
    • Clinical applications of microarray-based diagnostic tests
    • Wu, L., P.M. Williams, and W. Koch. 2005. Clinical applications of microarray-based diagnostic tests. BioTechniques 39:S577-S582.
    • (2005) BioTechniques , vol.39
    • Wu, L.1    Williams, P.M.2    Koch, W.3
  • 6
    • 34247195100 scopus 로고    scopus 로고
    • Microarray data quality-review of current developments
    • Wilkes, T., H. Laux, and C.A. Foy. 2007. Microarray data quality-review of current developments. OMICS 11:1-13.
    • (2007) OMICS , vol.11 , pp. 1-13
    • Wilkes, T.1    Laux, H.2    Foy, C.A.3
  • 11
    • 45749118607 scopus 로고    scopus 로고
    • Promoting coherent minimum reporting guidelines for biological and biomedical investigations: The MIBBI project
    • Taylor, C.F., D. Field, S.A. Sansone, J. Aerts, R. Apweiler, M. Ashburner, C.A. Ball, P.A. Binz, et al. 2008. Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat. Biotechnol. 26:889-896.
    • (2008) Nat. Biotechnol , vol.26 , pp. 889-896
    • Taylor, C.F.1    Field, D.2    Sansone, S.A.3    Aerts, J.4    Apweiler, R.5    Ashburner, M.6    Ball, C.A.7    Binz, P.A.8
  • 12
    • 67649354569 scopus 로고    scopus 로고
    • Minimum information about a microarray experiment (MIAME)-successes, failures, challenges
    • Brazma, A. 2009. Minimum information about a microarray experiment (MIAME)-successes, failures, challenges. ScientificWorldJournal 9:420-423.
    • (2009) ScientificWorldJournal , vol.9 , pp. 420-423
    • Brazma, A.1
  • 14
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar, R., M. Domrachev, and A.E. Lash. 2002. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30:207-210.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 15
    • 0347122079 scopus 로고    scopus 로고
    • CIBEX: Center for information biology gene expression database
    • Ikeo, K., J. Ishi-i, T. Tamura, T. Gojobori, and Y. Tateno. 2003. CIBEX: center for information biology gene expression database. C. R. Biol. 326:1079-1082.
    • (2003) C. R. Biol , vol.326 , pp. 1079-1082
    • Ikeo, K.1    Ishi-I, J.2    Tamura, T.3    Gojobori, T.4    Tateno, Y.5
  • 17
    • 59549093642 scopus 로고    scopus 로고
    • ArrayQualityMetricsa bioconductor package for quality assessment of microarray data
    • Kauffmann, A., R. Gentleman, and W. Huber. 2009. arrayQualityMetricsa bioconductor package for quality assessment of microarray data. Bioinformatics 25:415-416.
    • (2009) Bioinformatics , vol.25 , pp. 415-416
    • Kauffmann, A.1    Gentleman, R.2    Huber, W.3
  • 20
    • 77549088298 scopus 로고    scopus 로고
    • Microarray data quality control improves the detection of differentially expressed genes
    • Kauffmann, A. and W. Huber. 2010. Microarray data quality control improves the detection of differentially expressed genes. Genomics 95:138-142.
    • (2010) Genomics , vol.95 , pp. 138-142
    • Kauffmann, A.1    Huber, W.2
  • 22
    • 4344615591 scopus 로고    scopus 로고
    • From SHIQ and RDF to OWL: The making of a web ontology language
    • Horrocks, I., P.F. Patel-Schneider, and F. van Harmelen. 2003. From SHIQ and RDF to OWL: the making of a web ontology language. J. Web Semant. 1:7-26.
    • (2003) J. Web Semant , vol.1 , pp. 7-26
    • Horrocks, I.1    Patel-Schneider, P.F.2    van Harmelen, F.3
  • 24
    • 33748491517 scopus 로고    scopus 로고
    • The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
    • MAQC Consortium
    • MAQC Consortium. 2006. The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat.Biotechnol. 24:1151-1161.
    • (2006) Nat. Biotechnol , vol.24 , pp. 1151-1161
  • 25
    • 73349101866 scopus 로고    scopus 로고
    • Considerations for the development of a reference method for sequencing of haploid DNA-an opinion paper on behalf of the IFCC Committee on Molecular Diagnostics
    • Rousseau, F., D. Gancberg, H. Schimmel, M. Neumaier, A. Bureau, C. Mamotte, R. van Schaik, D. Payne, et al. 2009. Considerations for the development of a reference method for sequencing of haploid DNA-an opinion paper on behalf of the IFCC Committee on Molecular Diagnostics. Clin. Chem. Lab. Med. 47:1343-1350.
    • (2009) Clin. Chem. Lab. Med , vol.47 , pp. 1343-1350
    • Rousseau, F.1    Gancberg, D.2    Schimmel, H.3    Neumaier, M.4    Bureau, A.5    Mamotte, C.6    van Schaik, R.7    Payne, D.8
  • 26
    • 78751610817 scopus 로고    scopus 로고
    • Use of External RNA Controls in Gene Expression Assays; Approved Guideline
    • Clinical and Laboratory Standards Institute, CLSI Document MM16-A, [ISBN1-56238-617-4]. CLSI, Wayne, PA
    • Clinical and Laboratory Standards Institute. Use of External RNA Controls in Gene Expression Assays; Approved Guideline. CLSI Document MM16-A. Vol. 26. [ISBN1-56238-617-4]. CLSI, Wayne, PA.
    • , vol.26


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