-
1
-
-
38949196698
-
Utilizing tiling microarrays for whole-genome analysis in plants
-
Gregory, B.D., J. Yazaki, and J.R. Ecker. 2008. Utilizing tiling microarrays for whole-genome analysis in plants. Plant J. 53:636-644.
-
(2008)
Plant J
, vol.53
, pp. 636-644
-
-
Gregory, B.D.1
Yazaki, J.2
Ecker, J.R.3
-
2
-
-
40849097774
-
Comparing whole genomes using DNA microarrays
-
Gresham, D., M.J. Dunham, and D. Botstein. 2008. Comparing whole genomes using DNA microarrays. Nat. Rev. Genet. 9:291-302.
-
(2008)
Nat. Rev. Genet
, vol.9
, pp. 291-302
-
-
Gresham, D.1
Dunham, M.J.2
Botstein, D.3
-
3
-
-
33644844520
-
Microar ray technology: Beyond transcript profiling and genotype analysis
-
Hoheisel, J.D. 2006. Microar ray technology: beyond transcript profiling and genotype analysis. Nat. Rev. Genet. 7:200-210.
-
(2006)
Nat. Rev. Genet
, vol.7
, pp. 200-210
-
-
Hoheisel, J.D.1
-
4
-
-
67349209853
-
Next-generation DNA sequencing techniques
-
Ansorge, W.J. 2009. Next-generation DNA sequencing techniques. Nat. Biotechnol. 25:195-203.
-
(2009)
Nat. Biotechnol
, vol.25
, pp. 195-203
-
-
Ansorge, W.J.1
-
5
-
-
32944460008
-
Clinical applications of microarray-based diagnostic tests
-
Wu, L., P.M. Williams, and W. Koch. 2005. Clinical applications of microarray-based diagnostic tests. BioTechniques 39:S577-S582.
-
(2005)
BioTechniques
, vol.39
-
-
Wu, L.1
Williams, P.M.2
Koch, W.3
-
6
-
-
34247195100
-
Microarray data quality-review of current developments
-
Wilkes, T., H. Laux, and C.A. Foy. 2007. Microarray data quality-review of current developments. OMICS 11:1-13.
-
(2007)
OMICS
, vol.11
, pp. 1-13
-
-
Wilkes, T.1
Laux, H.2
Foy, C.A.3
-
7
-
-
33748495591
-
Rat toxicogenomic study reveals analytical consistency across microarray platforms
-
Guo, L., E.K. Lobenhofer, C. Wang, R. Shippy, S.C. Harris, L. Zhang, N. Mei, T. Chen, et al. 2006. Rat toxicogenomic study reveals analytical consistency across microarray platforms. Nat. Biotechnol. 24:1162-1169.
-
(2006)
Nat. Biotechnol
, vol.24
, pp. 1162-1169
-
-
Guo, L.1
Lobenhofer, E.K.2
Wang, C.3
Shippy, R.4
Harris, S.C.5
Zhang, L.6
Mei, N.7
Chen, T.8
-
8
-
-
59149088407
-
Repeatability of published microarray gene expression analyses
-
Ioannidis, J.P., D.B. Allison, C.A. Ball, I. Coulibaly, X. Cui, A.C. Culhane, M. Falchi, C. Furlanello, et al. 2009. Repeatability of published microarray gene expression analyses. Nat. Genet. 41:149-155.
-
(2009)
Nat. Genet
, vol.41
, pp. 149-155
-
-
Ioannidis, J.P.1
Allison, D.B.2
Ball, C.A.3
Coulibaly, I.4
Cui, X.5
Culhane, A.C.6
Falchi, M.7
Furlanello, C.8
-
9
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
-
Brazma, A., P. Hingamp, J. Quackenbush, G. Sherlock, P. Spellman, C. Stoeckert, J. Aach, W. Ansorge, et al. 2001. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat. Genet. 29:365-371.
-
(2001)
Nat. Genet
, vol.29
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
Sherlock, G.4
Spellman, P.5
Stoeckert, C.6
Aach, J.7
Ansorge, W.8
-
10
-
-
33845643077
-
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
-
Rayner, T.F., P. Rocca-Serra, P.T. Spellman, H.C. Causton, A. Farne, E. Holloway, R.A. Irizarry, J. Liu, et al. 2006. A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics 7:489.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 489
-
-
Rayner, T.F.1
Rocca-Serra, P.2
Spellman, P.T.3
Causton, H.C.4
Farne, A.5
Holloway, E.6
Irizarry, R.A.7
Liu, J.8
-
11
-
-
45749118607
-
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: The MIBBI project
-
Taylor, C.F., D. Field, S.A. Sansone, J. Aerts, R. Apweiler, M. Ashburner, C.A. Ball, P.A. Binz, et al. 2008. Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat. Biotechnol. 26:889-896.
-
(2008)
Nat. Biotechnol
, vol.26
, pp. 889-896
-
-
Taylor, C.F.1
Field, D.2
Sansone, S.A.3
Aerts, J.4
Apweiler, R.5
Ashburner, M.6
Ball, C.A.7
Binz, P.A.8
-
12
-
-
67649354569
-
Minimum information about a microarray experiment (MIAME)-successes, failures, challenges
-
Brazma, A. 2009. Minimum information about a microarray experiment (MIAME)-successes, failures, challenges. ScientificWorldJournal 9:420-423.
-
(2009)
ScientificWorldJournal
, vol.9
, pp. 420-423
-
-
Brazma, A.1
-
13
-
-
0037246058
-
ArrayExpress-a public repository for microarray gene expression data at the EBI
-
Brazma, A., H. Parkinson, U. Sarkans, M. Shojatalab, J. Vilo, N. Abeygunawardena, E. Holloway, M. Kapushesky, et al. 2003. ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucleic Acids Res. 31:68-71.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 68-71
-
-
Brazma, A.1
Parkinson, H.2
Sarkans, U.3
Shojatalab, M.4
Vilo, J.5
Abeygunawardena, N.6
Holloway, E.7
Kapushesky, M.8
-
14
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar, R., M. Domrachev, and A.E. Lash. 2002. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30:207-210.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
15
-
-
0347122079
-
CIBEX: Center for information biology gene expression database
-
Ikeo, K., J. Ishi-i, T. Tamura, T. Gojobori, and Y. Tateno. 2003. CIBEX: center for information biology gene expression database. C. R. Biol. 326:1079-1082.
-
(2003)
C. R. Biol
, vol.326
, pp. 1079-1082
-
-
Ikeo, K.1
Ishi-I, J.2
Tamura, T.3
Gojobori, T.4
Tateno, Y.5
-
16
-
-
27144548491
-
The External RNA controls consortium: A progress report
-
Baker, S.C., S.R. Bauer, R.P. Beyer, J.D. Brenton, B. Bromley, J. Burrill, H. Causton, M.P. Conley, et al. 2005. The External RNA controls consortium: a progress report. Nat. Methods 2:731-734
-
(2005)
Nat. Methods
, vol.2
, pp. 731-734
-
-
Baker, S.C.1
Bauer, S.R.2
Beyer, R.P.3
Brenton, J.D.4
Bromley, B.5
Burrill, J.6
Causton, H.7
Conley, M.P.8
-
17
-
-
59549093642
-
ArrayQualityMetricsa bioconductor package for quality assessment of microarray data
-
Kauffmann, A., R. Gentleman, and W. Huber. 2009. arrayQualityMetricsa bioconductor package for quality assessment of microarray data. Bioinformatics 25:415-416.
-
(2009)
Bioinformatics
, vol.25
, pp. 415-416
-
-
Kauffmann, A.1
Gentleman, R.2
Huber, W.3
-
18
-
-
68549090980
-
Importing ArrayExpress datasets into R/Bioconductor
-
Kauffmann, A., T.F. Rayner, H. Parkinson, M. Kapushesky, M. Lukk, A. Brazma, and W. Huber. 2009. Importing ArrayExpress datasets into R/Bioconductor. Bioinformatics 25:2092-2094.
-
(2009)
Bioinformatics
, vol.25
, pp. 2092-2094
-
-
Kauffmann, A.1
Rayner, T.F.2
Parkinson, H.3
Kapushesky, M.4
Lukk, M.5
Brazma, A.6
Huber, W.7
-
19
-
-
75549085494
-
Gene Expression Atlas At the European Bioinformatics Institute
-
(Database issue)
-
Kapushesky, M., I. Emam, E. Holloway, P. Kurnosov, A. Zorin, J. Malone, G. Rustici, E. Williams, et al. 2010. Gene Expression Atlas at the European Bioinformatics Institute. Nucleic Acids Res. 38(Database issue):D690-D698.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Kapushesky, M.1
Emam, I.2
Holloway, E.3
Kurnosov, P.4
Zorin, A.5
Malone, J.6
Rustici, G.7
Williams, E.8
-
20
-
-
77549088298
-
Microarray data quality control improves the detection of differentially expressed genes
-
Kauffmann, A. and W. Huber. 2010. Microarray data quality control improves the detection of differentially expressed genes. Genomics 95:138-142.
-
(2010)
Genomics
, vol.95
, pp. 138-142
-
-
Kauffmann, A.1
Huber, W.2
-
21
-
-
77950644737
-
A global map of human gene expression
-
Lukk, M., M. Kapushesky, J. Nikkilä H. Parkinson, A. Goncalves, W. Huber, E. Ukkonen, and A. Brazma. 2010. A global map of human gene expression. Nat. Biotechnol.28:322-324.
-
(2010)
Nat. Biotechnol
, vol.28
, pp. 322-324
-
-
Lukk, M.1
Kapushesky, M.2
Nikkilä, J.3
Parkinson, H.4
Goncalves, A.5
Huber, W.6
Ukkonen, E.7
Brazma, A.8
-
23
-
-
77951973818
-
Modeling sample variables with an experimental factor ontology
-
Malone, J., E. Holloway, T. Adamusiak, M. Kapushesky, J. Zheng, N. Kolesnikov, A. Zhukova, A. Brazma, and H. Parkinson. 2010. Modeling sample variables with an experimental factor ontology. Bioinformatics 26:1112-1118.
-
(2010)
Bioinformatics
, vol.26
, pp. 1112-1118
-
-
Malone, J.1
Holloway, E.2
Adamusiak, T.3
Kapushesky, M.4
Zheng, J.5
Kolesnikov, N.6
Zhukova, A.7
Brazma, A.8
Parkinson, H.9
-
24
-
-
33748491517
-
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
-
MAQC Consortium
-
MAQC Consortium. 2006. The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat.Biotechnol. 24:1151-1161.
-
(2006)
Nat. Biotechnol
, vol.24
, pp. 1151-1161
-
-
-
25
-
-
73349101866
-
Considerations for the development of a reference method for sequencing of haploid DNA-an opinion paper on behalf of the IFCC Committee on Molecular Diagnostics
-
Rousseau, F., D. Gancberg, H. Schimmel, M. Neumaier, A. Bureau, C. Mamotte, R. van Schaik, D. Payne, et al. 2009. Considerations for the development of a reference method for sequencing of haploid DNA-an opinion paper on behalf of the IFCC Committee on Molecular Diagnostics. Clin. Chem. Lab. Med. 47:1343-1350.
-
(2009)
Clin. Chem. Lab. Med
, vol.47
, pp. 1343-1350
-
-
Rousseau, F.1
Gancberg, D.2
Schimmel, H.3
Neumaier, M.4
Bureau, A.5
Mamotte, C.6
van Schaik, R.7
Payne, D.8
-
26
-
-
78751610817
-
Use of External RNA Controls in Gene Expression Assays; Approved Guideline
-
Clinical and Laboratory Standards Institute, CLSI Document MM16-A, [ISBN1-56238-617-4]. CLSI, Wayne, PA
-
Clinical and Laboratory Standards Institute. Use of External RNA Controls in Gene Expression Assays; Approved Guideline. CLSI Document MM16-A. Vol. 26. [ISBN1-56238-617-4]. CLSI, Wayne, PA.
-
, vol.26
-
-
|