-
1
-
-
0030903283
-
Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila
-
AKASHI, H., and S. W. SCHAEFFER, 1997 Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila. Genetics 146: 295-307.
-
(1997)
Genetics
, vol.146
, pp. 295-307
-
-
Akashi, H.1
Schaeffer, S.W.2
-
2
-
-
47349097264
-
Fixation probabilities depend on life history: Fecundity, generation time and survival in a burst-death model
-
ALEXANDER, H. K., and L. M. WAHL, 2008 Fixation probabilities depend on life history: fecundity, generation time and survival in a burst-death model. Evolution 62: 1600-1609.
-
(2008)
Evolution
, vol.62
, pp. 1600-1609
-
-
Alexander, H.K.1
Wahl, L.M.2
-
3
-
-
0032268351
-
A threshold limit theorem for the stochastic logistic epidemic
-
ANDERSSON, H., and B. DJEHICHE, 1998 A threshold limit theorem for the stochastic logistic epidemic. J. Appl. Probab. 35: 662-670.
-
(1998)
J. Appl. Probab.
, vol.35
, pp. 662-670
-
-
Andersson, H.1
Djehiche, B.2
-
4
-
-
0033878587
-
Linking genetic change to community evolution: Insights from studies of bacteria and bacteriophage
-
BOHANNAN, B. J. M., and R. E. LENSKI, 2000 Linking genetic change to community evolution: insights from studies of bacteria and bacteriophage. Ecol. Lett. 3: 362-377.
-
(2000)
Ecol. Lett.
, vol.3
, pp. 362-377
-
-
Bohannan, B.J.M.1
Lenski, R.E.2
-
5
-
-
0036421560
-
Trade-offs and coexistence in microbial microcosms
-
BOHANNAN, B. J.M., B.KERR, C.M. JESSUP, J. B. HUGHES and G. SANDVIK, 2002 Trade-offs and coexistence in microbial microcosms. Antonie Van Leeuwenhoek 81: 107-115.
-
(2002)
Antonie Van Leeuwenhoek
, vol.81
, pp. 107-115
-
-
Bohannan, B.J.M.1
Kerr, B.2
Jessup, C.M.3
Hughes, J.B.4
Sandvik, G.5
-
6
-
-
0030823001
-
Exceptional convergent evolution in a virus
-
BULL, J. J., M. R. BADGETT, H. A. WICHMAN, J. P. HUELSENBECK, D. M. HILLIS et al., 1997 Exceptional convergent evolution in a virus. Genetics 147: 1497-1507.
-
(1997)
Genetics
, vol.147
, pp. 1497-1507
-
-
Bull, J.J.1
Badgett, M.R.2
Wichman, H.A.3
Huelsenbeck, J.P.4
Hillis, D.M.5
-
7
-
-
0035691964
-
Directional selection and the site-frequency spectrum
-
BUSTAMANTE, C. D., J. WAKELEY, S. SAWYER and D. L. HARTL, 2001 Directional selection and the site-frequency spectrum. Genetics 159: 1779-1788.
-
(2001)
Genetics
, vol.159
, pp. 1779-1788
-
-
Bustamante, C.D.1
Wakeley, J.2
Sawyer, S.3
Hartl, D.L.4
-
8
-
-
0001344844
-
The latent roots of certain Markov chains arising in genetics: A new approach, i. haploid models
-
CANNINGS, C., 1974 The latent roots of certain Markov chains arising in genetics: a new approach, i. haploid models. Adv. Appl. Probab. 6: 260-290.
-
(1974)
Adv. Appl. Probab.
, vol.6
, pp. 260-290
-
-
Cannings, C.1
-
9
-
-
47349090987
-
Evolution of discrete populations and the canonical diffusion of adaptive dynamics
-
CHAMPAGNAT, N., and A. LAMBERT, 2007 Evolution of discrete populations and the canonical diffusion of adaptive dynamics. Ann. Appl. Probab. 17: 102-155.
-
(2007)
Ann. Appl. Probab.
, vol.17
, pp. 102-155
-
-
Champagnat, N.1
Lambert, A.2
-
10
-
-
0025596153
-
Dimensionless numbers and life history evolution: Age of maturity versus the adult lifespan
-
CHARNOV, E. L., 1986 Dimensionless numbers and life history evolution: age of maturity versus the adult lifespan. Evol. Ecol. 4: 273-275.
-
(1986)
Evol. Ecol.
, vol.4
, pp. 273-275
-
-
Charnov, E.L.1
-
11
-
-
2942653250
-
Algorithm 832: UMFPACK, an unsymmetric pattern multifrontal method
-
DAVIS, T. A., 2004 Algorithm 832: UMFPACK, an unsymmetric pattern multifrontal method. ACM Trans. Math. Soft. 30: 196-199.
-
(2004)
ACM Trans. Math. Soft.
, vol.30
, pp. 196-199
-
-
Davis, T.A.1
-
12
-
-
61349120804
-
The polymorphism frequency spectrum of finitely many sites under selection
-
DESAI, M. M., and J. B. PLOTKIN, 2008 The polymorphism frequency spectrum of finitely many sites under selection. Genetics 180: 2175-2191.
-
(2008)
Genetics
, vol.180
, pp. 2175-2191
-
-
Desai, M.M.1
Plotkin, J.B.2
-
13
-
-
0001255374
-
A genealogical approach to variable-population-size models in population genetics
-
DONNELLY, P., 1986 A genealogical approach to variable-population-size models in population genetics. J. Appl. Probab. 23: 283-296.
-
(1986)
J. Appl. Probab.
, vol.23
, pp. 283-296
-
-
Donnelly, P.1
-
15
-
-
64149087635
-
Degenerate diffusions arising from gene duplication models
-
DURRETT, R., and L. POPOVIC, 2009 Degenerate diffusions arising from gene duplication models. Ann. Appl. Probab. 19: 15-48.
-
(2009)
Ann. Appl. Probab.
, vol.19
, pp. 15-48
-
-
Durrett, R.1
Popovic, L.2
-
17
-
-
84966182123
-
The probability of survival of a new mutant in a fluctuating environment
-
EWENS, W. J., 1967 The probability of survival of a new mutant in a fluctuating environment. Heredity 22: 438-443.
-
(1967)
Heredity
, vol.22
, pp. 438-443
-
-
Ewens, W.J.1
-
18
-
-
0015310384
-
The sampling theory of selectively neutral alleles
-
EWENS, W. J., 1972 The sampling theory of selectively neutral alleles. Theor. Popul. Biol. 3: 87-112.
-
(1972)
Theor. Popul. Biol.
, vol.3
, pp. 87-112
-
-
Ewens, W.J.1
-
20
-
-
0033911640
-
Hitchhiking under positive Darwinian selection
-
FAY, J. C., and C.-I. WU, 2000 Hitchhiking under positive Darwinian selection. Genetics 155: 1405-1413.
-
(2000)
Genetics
, vol.155
, pp. 1405-1413
-
-
Fay, J.C.1
Wu, C.-I.2
-
22
-
-
0027453041
-
Statistical tests of neutrality of mutations
-
FU, Y. X., and W. H. LI, 1992 Statistical tests of neutrality of mutations. Genetics 133: 693-709.
-
(1992)
Genetics
, vol.133
, pp. 693-709
-
-
Fu, Y.X.1
Li, W.H.2
-
24
-
-
0016136872
-
Nautural selection for within-generation variance in offspring number
-
GILLESPIE, J. H., 1974 Nautural selection for within-generation variance in offspring number. Genetics 76: 601-606.
-
(1974)
Genetics
, vol.76
, pp. 601-606
-
-
Gillespie, J.H.1
-
25
-
-
0016787093
-
Natural selection for within-generation variance in offspring number ii. discrete haploid models
-
GILLESPIE, J. H., 1975 Natural selection for within-generation variance in offspring number ii. discrete haploid models. Genetics 81: 403-413.
-
(1975)
Genetics
, vol.81
, pp. 403-413
-
-
Gillespie, J.H.1
-
26
-
-
0001360887
-
Natural selection for variances in offspring numbers: A new evolutionary principle
-
GILLESPIE, J. H., 1977 Natural selection for variances in offspring numbers: a new evolutionary principle. Am. Nat. 111: 1010-1014.
-
(1977)
Am. Nat.
, vol.111
, pp. 1010-1014
-
-
Gillespie, J.H.1
-
27
-
-
0041527185
-
Fitness cost of fluoroquinolone resistance in Salmonella enterica serovar Typhimurium
-
GIRAUD, E., A. CLOECKAERT, S. BAUCHERON, C. MOULINE and E. CHASLUS-DANCLA, 2003 Fitness cost of fluoroquinolone resistance in Salmonella enterica serovar Typhimurium. J. Med. Microbiol. 52: 697-703.
-
(2003)
J. Med. Microbiol.
, vol.52
, pp. 697-703
-
-
Giraud, E.1
Cloeckaert, A.2
Baucheron, S.3
Mouline, C.4
Chaslus-Dancla, E.5
-
28
-
-
0028782096
-
Sampling theory for neutral alleles in a varying environment
-
GRIFFITHS, R. C., and S. TAVARÉ, 1994 Sampling theory for neutral alleles in a varying environment. Philos. Trans. R. Soc. Lond. B 344: 403-410.
-
(1994)
Philos. Trans. R. Soc. Lond. B
, vol.344
, pp. 403-410
-
-
Griffiths, R.C.1
Tavaré, S.2
-
29
-
-
0018868854
-
Single-nutrient microbial competition: Qualitative agreement between experimental and theoretically forecast outcomes
-
HANSEN, S. R., and S. P. HUBBELL, 1980 Single-nutrient microbial competition: qualitative agreement between experimental and theoretically forecast outcomes. Science 207: 1491-1493.
-
(1980)
Science
, vol.207
, pp. 1491-1493
-
-
Hansen, S.R.1
Hubbell, S.P.2
-
30
-
-
0004226825
-
-
Ed. 4. Sinauer Associates, Sunderland, MA
-
HARTL, D. L., and A. G. CLARK, 2006 Principles of Population Genetics, Ed. 4. Sinauer Associates, Sunderland, MA.
-
(2006)
Principles of Population Genetics
-
-
Hartl, D.L.1
Clark, A.G.2
-
31
-
-
0344803077
-
Potential for selection among nearly neutral allozymes of 6-phosphogluconate dehydrogenase in Escherichia coli
-
HARTL, D. L., and D. E. DYKHUIZEN, 1981 Potential for selection among nearly neutral allozymes of 6-phosphogluconate dehydrogenase in Escherichia coli. Proc. Natl. Acad. Sci. USA 78: 6344-6348.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 6344-6348
-
-
Hartl, D.L.1
Dykhuizen, D.E.2
-
33
-
-
0035695235
-
Profiles of adaptation in two similar viruses
-
HOLDER, K. K., and J. J. BULL, 2001 Profiles of adaptation in two similar viruses. Genetics 159: 1393-1404.
-
(2001)
Genetics
, vol.159
, pp. 1393-1404
-
-
Holder, K.K.1
Bull, J.J.2
-
34
-
-
0038244056
-
Within-generation bet hedging: A seductive explanation?
-
HOPPER, K., J. ROSENHEIM, T. PROUT and S. OPPENHEIM, 2003 Within-generation bet hedging: A seductive explanation? Oikos 101: 219-222.
-
(2003)
Oikos
, vol.101
, pp. 219-222
-
-
Hopper, K.1
Rosenheim, J.2
Prout, T.3
Oppenheim, S.4
-
35
-
-
0023339852
-
A test of neutral molecular evolution based on nucleotide data
-
HUDSON, R. R., M. KREITMAN and M. AGUADÉ, 1987 A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
-
(1987)
Genetics
, vol.116
, pp. 153-159
-
-
Hudson, R.R.1
Kreitman, M.2
Aguadé, M.3
-
36
-
-
49249112719
-
The shape of an ecological trade-off varies with environment
-
JESSUP, C. M., and B. J. M. BOHANNAN, 2008 The shape of an ecological trade-off varies with environment. Ecol. Lett. 11: 947-959.
-
(2008)
Ecol. Lett.
, vol.11
, pp. 947-959
-
-
Jessup, C.M.1
Bohannan, B.J.M.2
-
37
-
-
0037573260
-
The coalescent process in a population with stochastically varying size
-
KAJ, I., and S. M. KRONE, 2003 The coalescent process in a population with stochastically varying size. J. Appl. Probab. 40: 33-48.
-
(2003)
J. Appl. Probab.
, vol.40
, pp. 33-48
-
-
Kaj, I.1
Krone, S.M.2
-
38
-
-
0343553551
-
Direct product branching processes and related Markov chains
-
KARLIN, S., and J. MCGREGOR, 1964 Direct product branching processes and related Markov chains. Proc. Natl. Acad. Sci. USA 51: 598-602.
-
(1964)
Proc. Natl. Acad. Sci. USA
, vol.51
, pp. 598-602
-
-
Karlin, S.1
Mcgregor, J.2
-
39
-
-
0039262915
-
Solutions of a stochastic differential equation forced onto a manifold by a large drift
-
KATZENBERGER, G. S., 1991 Solutions of a stochastic differential equation forced onto a manifold by a large drift. Ann. Probab. 19: 1587-1628.
-
(1991)
Ann. Probab.
, vol.19
, pp. 1587-1628
-
-
Katzenberger, G.S.1
-
40
-
-
0001017871
-
Solution of a process of random genetic drift with a continuous model
-
KIMURA, M., 1955 Solution of a process of random genetic drift with a continuous model. Proc. Natl. Acad. Sci. USA 41: 144-150.
-
(1955)
Proc. Natl. Acad. Sci. USA
, vol.41
, pp. 144-150
-
-
Kimura, M.1
-
41
-
-
0000800333
-
On the probability of fixation of mutant genes in a population
-
KIMURA, M., 1962 On the probability of fixation of mutant genes in a population. Genetics 47: 713-719.
-
(1962)
Genetics
, vol.47
, pp. 713-719
-
-
Kimura, M.1
-
42
-
-
0016272837
-
Probability of gene fixation in an expanding finite population
-
KIMURA, M., and T. OHTA, 1974 Probability of gene fixation in an expanding finite population. Proc. Natl. Acad. Sci. USA 71: 3377-3379.
-
(1974)
Proc. Natl. Acad. Sci. USA
, vol.71
, pp. 3377-3379
-
-
Kimura, M.1
Ohta, T.2
-
44
-
-
85121160103
-
The branching process with logistic growth
-
LAMBERT, A., 2005 The branching process with logistic growth. Ann. Appl. Probab. 69: 419-441.
-
(2005)
Ann. Appl. Probab.
, vol.69
, pp. 419-441
-
-
Lambert, A.1
-
45
-
-
78751639663
-
Probability of fixation under weak selection: A branching process unifying approach
-
LAMBERT, A., 2006 Probability of fixation under weak selection: a branching process unifying approach. Theor. Popul. Biol. 15: 1506-1535.
-
(2006)
Theor. Popul. Biol.
, vol.15
, pp. 1506-1535
-
-
Lambert, A.1
-
46
-
-
0020404749
-
A quantitative genetic theory of life history evolution
-
LANDE, R., 1982 A quantitative genetic theory of life history evolution. Ecology 63: 607-615.
-
(1982)
Ecology
, vol.63
, pp. 607-615
-
-
Lande, R.1
-
47
-
-
0038441327
-
Evolution experiments with microorganisms: The dynamics and genetic bases of adaptation
-
LENSKI, R., and S. F. ELENA, 2003 Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat. Rev. Genet. 4: 457-469.
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 457-469
-
-
Lenski, R.1
Elena, S.F.2
-
48
-
-
0026279651
-
Longterm experimental evolution in Escherichia coli i
-
LENSKI, R., M. R. ROSE, S. SIMPSON and S. C. TADLER, 1991 Longterm experimental evolution in Escherichia coli i. Am. Nat. 138: 1315-1341.
-
(1991)
Am. Nat.
, vol.138
, pp. 1315-1341
-
-
Lenski, R.1
Rose, M.R.2
Simpson, S.3
Tadler, S.C.4
-
49
-
-
0028365256
-
Dynamics of adaptation and diversification: A 10,000-generation experiment with bacterial populations
-
LENSKI, R. E., and M. TRAVISANO, 1994 Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations. Proc. Natl. Acad. Sci. USA 91: 6808-6814.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 6808-6814
-
-
Lenski, R.E.1
Travisano, M.2
-
50
-
-
35549003524
-
An exact sampling formula for the Wright-Fisher model and a solution to a conjecture about the finite-island model
-
LESSARD, S., 2007 An exact sampling formula for the Wright-Fisher model and a solution to a conjecture about the finite-island model. Genetics 177: 1249-1254.
-
(2007)
Genetics
, vol.177
, pp. 1249-1254
-
-
Lessard, S.1
-
54
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
MCDONALD, J., and M. KREITMAN, 1991 Adaptive protein evolution at the Adh locus in Drosophila. Nature 351: 652-654.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
Mcdonald, J.1
Kreitman, M.2
-
55
-
-
18044404899
-
Forward and backward diffusion approximations for haploid exchangeable population models
-
MÖHLE, M., 2001 Forward and backward diffusion approximations for haploid exchangeable population models. Stoch. Proc. Appl. 95: 133-149.
-
(2001)
Stoch. Proc. Appl.
, vol.95
, pp. 133-149
-
-
Möhle, M.1
-
56
-
-
84949558457
-
Random processes in genetics
-
MORAN, P. A. P., 1958 Random processes in genetics. Proc. Camb. Philos. Soc. 54: 60-71.
-
(1958)
Proc. Camb. Philos. Soc.
, vol.54
, pp. 60-71
-
-
Moran, P.A.P.1
-
57
-
-
0030994606
-
The probability of fixation in populations of changing size
-
OTTO, S. P., and M. C. WHITLOCK, 1997 The probability of fixation in populations of changing size. Genetics 146: 723-733.
-
(1997)
Genetics
, vol.146
, pp. 723-733
-
-
Otto, S.P.1
Whitlock, M.C.2
-
59
-
-
34249938400
-
Fixation in haploid populations exhibiting density dependence I: The non-neutral case
-
PARSONS, T. L., and C. QUINCE, 2007 Fixation in haploid populations exhibiting density dependence I: the non-neutral case. Theor. Popul. Biol. 72: 121-135.
-
(2007)
Theor. Popul. Biol.
, vol.72
, pp. 121-135
-
-
Parsons, T.L.1
Quince, C.2
-
60
-
-
0030389934
-
Predicting the outcome of competition using experimental data: Maximum likelihood and Bayesian approaches
-
PASCUAL, M. A., and P. KAREIVA, 1996 Predicting the outcome of competition using experimental data: maximum likelihood and Bayesian approaches. Ecology 77: 337-349.
-
(1996)
Ecology
, vol.77
, pp. 337-349
-
-
Pascual, M.A.1
Kareiva, P.2
-
61
-
-
0000612237
-
R and K selection or b and d selection?
-
PIANKA, E. R., 1972 r and K selection or b and d selection? Am. Nat. 106: 581-588.
-
(1972)
Am. Nat.
, vol.106
, pp. 581-588
-
-
Pianka, E.R.1
-
63
-
-
0033855928
-
The ESS under spatial variation with applications to sex allocation
-
PROULX, S. R., 2000 The ESS under spatial variation with applications to sex allocation. Theor. Popul. Biol. 58: 33-47.
-
(2000)
Theor. Popul. Biol.
, vol.58
, pp. 33-47
-
-
Proulx, S.R.1
-
64
-
-
0026460082
-
Population genetics of polymorphism and divergence
-
SAWYER, S. A., and D. L. HARTL, 1992 Population genetics of polymorphism and divergence. Genetics 132: 1161-1176.
-
(1992)
Genetics
, vol.132
, pp. 1161-1176
-
-
Sawyer, S.A.1
Hartl, D.L.2
-
65
-
-
22444438657
-
Evolution of variance in offspring number: The effects of population size and migration
-
SHPAK, M., 2005 Evolution of variance in offspring number: the effects of population size and migration. Theor. Biosci. 124: 65-85.
-
(2005)
Theor. Biosci.
, vol.124
, pp. 65-85
-
-
Shpak, M.1
-
66
-
-
37249026661
-
Selection against demographic stochasticity in age-structured populations
-
SHPAK, M., 2007 Selection against demographic stochasticity in age-structured populations. Genetics 177: 2181-2194.
-
(2007)
Genetics
, vol.177
, pp. 2181-2194
-
-
Shpak, M.1
-
67
-
-
0001041982
-
Hedging one's evolutionary bets
-
SLATKIN, M., 1974 Hedging one's evolutionary bets. Nature 250: 704-705.
-
(1974)
Nature
, vol.250
, pp. 704-705
-
-
Slatkin, M.1
-
69
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
TAJIMA, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
70
-
-
70349326220
-
The genealogical consequences of fecundity variance polymorphism
-
TAYLOR, J. E., 2009 The genealogical consequences of fecundity variance polymorphism. Genetics 182: 813-837.
-
(2009)
Genetics
, vol.182
, pp. 813-837
-
-
Taylor, J.E.1
-
71
-
-
0000151238
-
The competitive structure of communities: An experimental approach with protozoa
-
VANDERMEER, J. H., 1969 The competitive structure of communities: an experimental approach with protozoa. Ecology 50: 362-371.
-
(1969)
Ecology
, vol.50
, pp. 362-371
-
-
Vandermeer, J.H.1
-
72
-
-
0033442083
-
Ecological strategies and fitness tradeoffs in Escherichia coli mutants adapted to prolonged starvation
-
VASI, F. K., and R. E. LENSKI, 1999 Ecological strategies and fitness tradeoffs in Escherichia coli mutants adapted to prolonged starvation. J. Genet. 78: 43-49.
-
(1999)
J. Genet.
, vol.78
, pp. 43-49
-
-
Vasi, F.K.1
Lenski, R.E.2
-
73
-
-
0006170098
-
Fluctuations in the abundance of a species considered mathematically
-
VOLTERRA, V., 1926 Fluctuations in the abundance of a species considered mathematically. Nature 118: 558-560.
-
(1926)
Nature
, vol.118
, pp. 558-560
-
-
Volterra, V.1
-
74
-
-
8544257386
-
Fixation probability favors increased fecundity over reduced generation time
-
WAHL, L. M., and C. S. DEHAAN, 2004 Fixation probability favors increased fecundity over reduced generation time. Genetics 168: 1009-1018.
-
(2004)
Genetics
, vol.168
, pp. 1009-1018
-
-
Wahl, L.M.1
Dehaan, C.S.2
-
75
-
-
0035544558
-
Fixation probability in populations with periodic bottlenecks
-
WAHL, L. M., and P. J. GERRISH, 2001 Fixation probability in populations with periodic bottlenecks. Evolution 55: 2606-2610.
-
(2001)
Evolution
, vol.55
, pp. 2606-2610
-
-
Wahl, L.M.1
Gerrish, P.J.2
-
76
-
-
13744261515
-
The limits of theoretical population genetics
-
WAKELEY, J., 2005 The limits of theoretical population genetics. Genetics 169: 1-7.
-
(2005)
Genetics
, vol.169
, pp. 1-7
-
-
Wakeley, J.1
-
78
-
-
0001771498
-
Evolution in Mendelian populations
-
WRIGHT, S., 1931 Evolution in Mendelian populations. Genetics 16: 97-159.
-
(1931)
Genetics
, vol.16
, pp. 97-159
-
-
Wright, S.1
-
79
-
-
0033639150
-
Statistical methods for detecting molecular adaptation
-
YANG, Z., and J. P. BIELAWSKI, 2000 Statistical methods for detecting molecular adaptation. Trends Ecol. Evol. 15: 496-503.
-
(2000)
Trends Ecol. Evol.
, vol.15
, pp. 496-503
-
-
Yang, Z.1
Bielawski, J.P.2
|