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Volumn 173, Issue 2, 2011, Pages 345-349

Exploring vitreous cryo-section-induced compression at the macromolecular level using electron cryo-tomography; 80S yeast ribosomes appear unaffected

Author keywords

Compression; Electron cryo tomography; Saccharomyces cerevisiae 80S ribosome; Vitreous cryo sectioning

Indexed keywords

ARTICLE; COMPRESSION; CONTROLLED STUDY; ELECTRON TOMOGRAPHY; MACROMOLECULE; NONHUMAN; PRIORITY JOURNAL; RIBOSOME; YEAST;

EID: 78751578968     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2010.09.017     Document Type: Article
Times cited : (32)

References (40)
  • 1
    • 0142057237 scopus 로고    scopus 로고
    • An oscillating cryo-knife reduces cutting-induced deformation of vitreous ultrathin sections
    • Al-Amoudi A., Dubochet J., Gnagi H., Luthi W., Studer D. An oscillating cryo-knife reduces cutting-induced deformation of vitreous ultrathin sections. J. Microsc. 2003, 212:26-33.
    • (2003) J. Microsc. , vol.212 , pp. 26-33
    • Al-Amoudi, A.1    Dubochet, J.2    Gnagi, H.3    Luthi, W.4    Studer, D.5
  • 3
    • 15444366581 scopus 로고    scopus 로고
    • Cutting artifacts and cutting process in vitreous sections for cryo-electron microscopy
    • Al-Amoudi A., Studer D., Dubochet J. Cutting artifacts and cutting process in vitreous sections for cryo-electron microscopy. J. Struct. Biol. 2005, 150:109-121.
    • (2005) J. Struct. Biol. , vol.150 , pp. 109-121
    • Al-Amoudi, A.1    Studer, D.2    Dubochet, J.3
  • 4
    • 36849060240 scopus 로고    scopus 로고
    • The molecular architecture of cadherins in native epidermal desmosomes
    • Al-Amoudi A., Díez D.C., Betts M.J., Frangakis A.S. The molecular architecture of cadherins in native epidermal desmosomes. Nature 2007, 450:832-837.
    • (2007) Nature , vol.450 , pp. 832-837
    • Al-Amoudi, A.1    Díez, D.C.2    Betts, M.J.3    Frangakis, A.S.4
  • 6
    • 30044447160 scopus 로고    scopus 로고
    • Cryoelectron microscopy of vitrified sections: a new challenge for the analysis of functional nuclear architecture
    • Bouchet-Marquis C., Dubochet J., Fakan S. Cryoelectron microscopy of vitrified sections: a new challenge for the analysis of functional nuclear architecture. Histochem. Cell. Biol. 2006, 125:43-51.
    • (2006) Histochem. Cell. Biol. , vol.125 , pp. 43-51
    • Bouchet-Marquis, C.1    Dubochet, J.2    Fakan, S.3
  • 8
    • 0021033979 scopus 로고
    • Freezing, sectioning and observation artifacts of frozen hydrated sections for electron microscopy
    • Chang J.J., McDowall A.W., Lepault J., Freeman R., Walter C.A., Dubochet J. Freezing, sectioning and observation artifacts of frozen hydrated sections for electron microscopy. J. Microsc. 1983, 132:109-123.
    • (1983) J. Microsc. , vol.132 , pp. 109-123
    • Chang, J.J.1    McDowall, A.W.2    Lepault, J.3    Freeman, R.4    Walter, C.A.5    Dubochet, J.6
  • 10
    • 58149401194 scopus 로고    scopus 로고
    • Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ
    • Elstov M., Maclellan K.M., Maeshima K., Frangakis A.S., Dubochet J. Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ. Proc. Nat. Acad. Sci. USA 2008, 105:19732-19737.
    • (2008) Proc. Nat. Acad. Sci. USA , vol.105 , pp. 19732-19737
    • Elstov, M.1    Maclellan, K.M.2    Maeshima, K.3    Frangakis, A.S.4    Dubochet, J.5
  • 11
    • 0037438344 scopus 로고    scopus 로고
    • Prospects of electron cryotomography to visualize macromolecular complexes inside cellular compartments: implications of crowding
    • Grunewald K., Medalia O., Gross A., Steven A.C., Baumeister W. Prospects of electron cryotomography to visualize macromolecular complexes inside cellular compartments: implications of crowding. Biophys. J. 2003, 100:577-591.
    • (2003) Biophys. J. , vol.100 , pp. 577-591
    • Grunewald, K.1    Medalia, O.2    Gross, A.3    Steven, A.C.4    Baumeister, W.5
  • 12
    • 42649085386 scopus 로고    scopus 로고
    • Compression and crevassing in vitreous sections under different cutting conditions
    • Han H.M., Zuber B., Dubochet J. Compression and crevassing in vitreous sections under different cutting conditions. J. Microsc. 2008, 230:167-171.
    • (2008) J. Microsc. , vol.230 , pp. 167-171
    • Han, H.M.1    Zuber, B.2    Dubochet, J.3
  • 13
    • 33746728252 scopus 로고    scopus 로고
    • Class-1 release factor eRF1 promotes GTP binding by class-2 release factor eRF3
    • Hauryliuk V., Zavialov A., Kisselev L., Ehrenberg M. Class-1 release factor eRF1 promotes GTP binding by class-2 release factor eRF3. Biochimie 2006, 88:747-757.
    • (2006) Biochimie , vol.88 , pp. 747-757
    • Hauryliuk, V.1    Zavialov, A.2    Kisselev, L.3    Ehrenberg, M.4
  • 14
    • 33845336533 scopus 로고    scopus 로고
    • Bsoft: Image processing and molecular modeling for electron microscopy
    • Heymann J.B., Belnap D.M. Bsoft: Image processing and molecular modeling for electron microscopy. J. Struct. Biol. 2007, 157:3-18.
    • (2007) J. Struct. Biol. , vol.157 , pp. 3-18
    • Heymann, J.B.1    Belnap, D.M.2
  • 15
    • 4544274467 scopus 로고    scopus 로고
    • 3D Tomographic map of desmosome from frozen hydrated skin sections
    • Hsieh C., He W., Marko M., Stokes D.L. 3D Tomographic map of desmosome from frozen hydrated skin sections. Microsc. Microanal. 2004, 10(Suppl. 2):1188CD.
    • (2004) Microsc. Microanal. , vol.10 , Issue.SUPPL. 2
    • Hsieh, C.1    He, W.2    Marko, M.3    Stokes, D.L.4
  • 16
    • 29844448078 scopus 로고    scopus 로고
    • Towards high-resolution three-dimensional imaging of native mammalian tissue: Electron tomography of frozen-hydrated rat liver sections
    • Hsieh C.E., Leith A., Mannella C.A., Frank J., Marko M. Towards high-resolution three-dimensional imaging of native mammalian tissue: Electron tomography of frozen-hydrated rat liver sections. J. Struct. Biol. 2006, 153:1-13.
    • (2006) J. Struct. Biol. , vol.153 , pp. 1-13
    • Hsieh, C.E.1    Leith, A.2    Mannella, C.A.3    Frank, J.4    Marko, M.5
  • 17
    • 0029879295 scopus 로고    scopus 로고
    • Computer visualization of three-dimensional image data using IMOD
    • Kremer J.R., Mastronarde D.N., McIntosh J.R. Computer visualization of three-dimensional image data using IMOD. J. Struct. Biol. 1996, 116:71-76.
    • (1996) J. Struct. Biol. , vol.116 , pp. 71-76
    • Kremer, J.R.1    Mastronarde, D.N.2    McIntosh, J.R.3
  • 20
    • 14844330221 scopus 로고    scopus 로고
    • Structural studies by electron tomography: from cells to molecules
    • Lucic V., Förster F., Baumeister W. Structural studies by electron tomography: from cells to molecules. Annu. Rev. Biochem. 2005, 74:833-865.
    • (2005) Annu. Rev. Biochem. , vol.74 , pp. 833-865
    • Lucic, V.1    Förster, F.2    Baumeister, W.3
  • 21
    • 33847685630 scopus 로고    scopus 로고
    • Focused-ion-beam thinning of frozen-hydrated biological specimens for cryoelectron microscopy
    • Marko M., Hsieh C.H., Schalek R., Frank J., Mannella C. Focused-ion-beam thinning of frozen-hydrated biological specimens for cryoelectron microscopy. Nat. Methods 2007, 4:215-217.
    • (2007) Nat. Methods , vol.4 , pp. 215-217
    • Marko, M.1    Hsieh, C.H.2    Schalek, R.3    Frank, J.4    Mannella, C.5
  • 22
    • 0141994975 scopus 로고    scopus 로고
    • Cryo-transmission electron microscopy of frozen-hydrated sections of Escherichia coli and Pseudomonas aeruginosa
    • Matias V.R.F., Al-Amoudi A., Dubochet J., Beveridge T.J. Cryo-transmission electron microscopy of frozen-hydrated sections of Escherichia coli and Pseudomonas aeruginosa. J. Bacteriol. 2003, 185:6112-6118.
    • (2003) J. Bacteriol. , vol.185 , pp. 6112-6118
    • Matias, V.R.F.1    Al-Amoudi, A.2    Dubochet, J.3    Beveridge, T.J.4
  • 23
    • 0020960227 scopus 로고
    • Electron microscopy of frozen hydrated sections of vitreous ice and vitrified biological samples
    • McDowall A.W., Chang J.J., Freeman R., Lepault J., Walter C.A., Dubochet J. Electron microscopy of frozen hydrated sections of vitreous ice and vitrified biological samples. J. Microsc. 1983, 131:1-9.
    • (1983) J. Microsc. , vol.131 , pp. 1-9
    • McDowall, A.W.1    Chang, J.J.2    Freeman, R.3    Lepault, J.4    Walter, C.A.5    Dubochet, J.6
  • 24
    • 33750527990 scopus 로고    scopus 로고
    • Mapping 70S ribosomes in intact cells by cryoelectron tomography and pattern recognition
    • Ortiz J.O., Förster F., Kürner J., Linaroudis A.A., Baumeister W. Mapping 70S ribosomes in intact cells by cryoelectron tomography and pattern recognition. J. Struct. Biol. 2006, 156:334-341.
    • (2006) J. Struct. Biol. , vol.156 , pp. 334-341
    • Ortiz, J.O.1    Förster, F.2    Kürner, J.3    Linaroudis, A.A.4    Baumeister, W.5
  • 25
    • 69249220017 scopus 로고    scopus 로고
    • Toward visualization of nanomachines in their native cellular environment
    • Pierson J., Sani M., Tomova C., Godsave S., Peters P.J. Toward visualization of nanomachines in their native cellular environment. Histochem. Cell Biol. 2009, 132:253-262.
    • (2009) Histochem. Cell Biol. , vol.132 , pp. 253-262
    • Pierson, J.1    Sani, M.2    Tomova, C.3    Godsave, S.4    Peters, P.J.5
  • 26
    • 74449094003 scopus 로고    scopus 로고
    • Improving the technique of vitreous cryo-sectioning for cryo-electron tomography: electrostatic charging for section attachment and implementation of an anti-contamination glove box
    • Pierson J., Fernandez J.J., Bos E., Amini S., Gnaegi H., Vos M., Bel B., Adolfsen F., Carrascosa J.L., Peters P.J. Improving the technique of vitreous cryo-sectioning for cryo-electron tomography: electrostatic charging for section attachment and implementation of an anti-contamination glove box. J. Struct. Biol. 2010, 169:219-225.
    • (2010) J. Struct. Biol. , vol.169 , pp. 219-225
    • Pierson, J.1    Fernandez, J.J.2    Bos, E.3    Amini, S.4    Gnaegi, H.5    Vos, M.6    Bel, B.7    Adolfsen, F.8    Carrascosa, J.L.9    Peters, P.J.10
  • 28
    • 0027966710 scopus 로고
    • Cutting artifacts on ultrathin cryosections of biological bulk specimens
    • Richter K. Cutting artifacts on ultrathin cryosections of biological bulk specimens. Micron 1994, 25:297-308.
    • (1994) Micron , vol.25 , pp. 297-308
    • Richter, K.1
  • 30
    • 70449127057 scopus 로고    scopus 로고
    • Preservation of high resolution protein structure by cryo-electron microscopy of vitreous sections
    • Sader K., Studer D., Zuber B., Gnaegi H., Trinick J. Preservation of high resolution protein structure by cryo-electron microscopy of vitreous sections. Ultramicroscopy 2009, 110:43-47.
    • (2009) Ultramicroscopy , vol.110 , pp. 43-47
    • Sader, K.1    Studer, D.2    Zuber, B.3    Gnaegi, H.4    Trinick, J.5
  • 31
    • 58849121358 scopus 로고    scopus 로고
    • Electron cryomicroscopy of E. Coli reveals filament bundles involved in plasmid DNA segregation
    • Salje J., Zuber B., Löwe J. Electron cryomicroscopy of E. Coli reveals filament bundles involved in plasmid DNA segregation. Science 2009, 23:509-512.
    • (2009) Science , vol.23 , pp. 509-512
    • Salje, J.1    Zuber, B.2    Löwe, J.3
  • 32
    • 0031767521 scopus 로고    scopus 로고
    • Electron beam-induced changes in vitreous sections of biological samples
    • Sartori Blanc N., Studer D., Ruhl K., Dubochet J. Electron beam-induced changes in vitreous sections of biological samples. J. Microsc. 1998, 192:194-201.
    • (1998) J. Microsc. , vol.192 , pp. 194-201
    • Sartori Blanc, N.1    Studer, D.2    Ruhl, K.3    Dubochet, J.4
  • 33
    • 18744387681 scopus 로고    scopus 로고
    • DNA in human and stallion spermatozoa forms local hexagonal packing with twist and many defects
    • Sartori-Blanc N., Senn A., Leforestier A., Livolant F., Dubochet J. DNA in human and stallion spermatozoa forms local hexagonal packing with twist and many defects. J. Struct. Biol. 2001, 134:76-81.
    • (2001) J. Struct. Biol. , vol.134 , pp. 76-81
    • Sartori-Blanc, N.1    Senn, A.2    Leforestier, A.3    Livolant, F.4    Dubochet, J.5
  • 35
    • 0035798380 scopus 로고    scopus 로고
    • Structure of the 80S ribosome from Saccharomyces cerevisiae-tRNA-ribosome and subunit-subunit interaction
    • Spahn C.M., Beckmann R., Eswar N., Penczek P.A., Sali A., Blobel G., Frank J. Structure of the 80S ribosome from Saccharomyces cerevisiae-tRNA-ribosome and subunit-subunit interaction. Cell 2001, 107:373-386.
    • (2001) Cell , vol.107 , pp. 373-386
    • Spahn, C.M.1    Beckmann, R.2    Eswar, N.3    Penczek, P.A.4    Sali, A.5    Blobel, G.6    Frank, J.7
  • 36
    • 0033956806 scopus 로고    scopus 로고
    • Minimal compression of ultrathin sections with use of an oscillating diamond knife
    • Studer D., Gnagi H. Minimal compression of ultrathin sections with use of an oscillating diamond knife. J. Microsc. 2000, 197:94-100.
    • (2000) J. Microsc. , vol.197 , pp. 94-100
    • Studer, D.1    Gnagi, H.2
  • 37
    • 0035462162 scopus 로고    scopus 로고
    • A new approach for cryofixation by high-pressure freezing
    • Studer D., Graber W., Al-Amoudi A., Eggli P. A new approach for cryofixation by high-pressure freezing. J. Microsc. 2001, 203:285-294.
    • (2001) J. Microsc. , vol.203 , pp. 285-294
    • Studer, D.1    Graber, W.2    Al-Amoudi, A.3    Eggli, P.4
  • 38
    • 0028207905 scopus 로고
    • Chromatin fibers observed in situ in frozen hydrated sections. Native fiber diameter is not correlated with nucleosome repeat length
    • Woodcock C.L. Chromatin fibers observed in situ in frozen hydrated sections. Native fiber diameter is not correlated with nucleosome repeat length. J. Cell Biol. 1994, 125:11-19.
    • (1994) J. Cell Biol. , vol.125 , pp. 11-19
    • Woodcock, C.L.1
  • 39
    • 4744346378 scopus 로고    scopus 로고
    • Direct visualization of receptor arrays in frozen-hydrated sections and plunge-frozen specimens of E Coli engineered to overproduce the chemotaxis receptor Tsr
    • Zhang P., Bos E., Heyman J., Gnagi H., Kessel M., Peters P.J., Subramaniam S. Direct visualization of receptor arrays in frozen-hydrated sections and plunge-frozen specimens of E Coli engineered to overproduce the chemotaxis receptor Tsr. J. Microsc. 2004, 216:76-83.
    • (2004) J. Microsc. , vol.216 , pp. 76-83
    • Zhang, P.1    Bos, E.2    Heyman, J.3    Gnagi, H.4    Kessel, M.5    Peters, P.J.6    Subramaniam, S.7
  • 40
    • 33748804439 scopus 로고    scopus 로고
    • Granular layer in the periplasmic space of gram-positive bacteria and fine structures of Enterococcus gallinarum and Streptococcus gordonii septa revealed by cryo-electron microscopy of vitreous sections
    • Zuber B., Haenni M., Ribeiro T., Minning K., Lopes F., Moreillon P., Dubochet J. Granular layer in the periplasmic space of gram-positive bacteria and fine structures of Enterococcus gallinarum and Streptococcus gordonii septa revealed by cryo-electron microscopy of vitreous sections. J. Bacteriol. 2006, 188:6652-6660.
    • (2006) J. Bacteriol. , vol.188 , pp. 6652-6660
    • Zuber, B.1    Haenni, M.2    Ribeiro, T.3    Minning, K.4    Lopes, F.5    Moreillon, P.6    Dubochet, J.7


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