Molecular typing of Mycobacterium tuberculosis circulated in Moscow, Russian Federation

European Journal of Clinical Microbiology and Infectious Diseases

Volumn 30, Issue 2, 2011, Pages 181-191

  Afanas'ev, M V ^a   Ikryannikova, L N ^a   Il'Ina, E N ^a   Kuz'Min, A V ^b   Larionova, E E ^b   Smirnova, T G ^b   Chernousova, L N ^b   Govorun, V M ^a  

^a N N BLOKHIN NATIONAL MEDICAL RESEARCH CENTER OF ONCOLOGY   (Russian Federation)

^b CENTRAL TUBERCULOSIS RESEARCH INSTITUTE   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

ISONIAZID; KATG PROTEIN; LEUCINE; RIFAMPICIN; RNA POLYMERASE BETA SUBUNIT; SERINE;

ADOLESCENT; ADULT; AGED; AMINO ACID SUBSTITUTION; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; CODON; CONTROLLED STUDY; FEMALE; GENE LOCUS; GENE MUTATION; GENETIC VARIABILITY; HUMAN; MAJOR CLINICAL STUDY; MALE; MOLECULAR TYPING; MULTIDRUG RESISTANCE; MULTIDRUG RESISTANT TUBERCULOSIS; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROMOTER REGION; RUSSIAN FEDERATION; VARIABLE NUMBER OF TANDEM REPEAT;

ADOLESCENT; ADULT; AGED; AMINO ACID SUBSTITUTION; BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; CATALASE; FEMALE; GENETIC VARIATION; GENOTYPE; HUMANS; MALE; MIDDLE AGED; MOLECULAR EPIDEMIOLOGY; MOLECULAR TYPING; MOSCOW; MUTATION, MISSENSE; MYCOBACTERIUM TUBERCULOSIS; SPUTUM; TUBERCULOSIS; YOUNG ADULT;

EID: 78751566498     PISSN: 09349723     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10096-010-1067-z     Document Type: Article

References (37)

1. World Health Organization (WHO) (2008) Anti-tuberculosis drug resistance in the world. Fourth global report. WHO, Geneva
2. P Supply C Allix S Lesjean M Cardoso-Oelemann S Rüsch-Gerdes E Willery E Savine P de Haas H van Deutekom S Roring P Bifani N Kurepina B Kreiswirth C Sola N Rastogi V Vatin MC Gutierrez M Fauville S Niemann R Skuce K Kremer C Locht D van Soolingen 2006 Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis J Clin Microbiol 44 4498 4510 1:CAS:528: DC%2BD2sXmslKjsQ%3D%3D 10.1128/JCM.01392-06 17005759 (Pubitemid 44937085)
3. J Kamerbeek L Schouls A Kolk M van Agterveld D van Soolingen S Kuijper A Bunschoten H Molhuizen R Shaw M Goyal J van Embden 1997 Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology J Clin Microbiol 35 907 914 1:CAS:528:DyaK2sXitlartL8%3D 9157152
4. LN Ikryannikova MV Afanas'ev TA Akopian EN Il'ina AV Kuz'min EE Larionova TG Smirnova LN Chernousova VM Govorun 2007 Mass-spectrometry based minisequencing method for the rapid detection of drug resistance in Mycobacterium tuberculosis J Microbiol Methods 70 3 395 405 1:CAS:528: DC%2BD2sXpsFKjs7w%3D 10.1016/j.mimet.2007.05.015 17602768 (Pubitemid 47302143)
5. MV Afanas'ev LN Ikryannikova EN Il'ina SV Sidorenko AV Kuz'min EE Larinova TG Smirnova LN Chernousova EY Kamaev SN Skorniakov VN Kinsht AG Cherednichenko VM Govorun 2007 Molecular characteristics of rifampicin- and isoniazid-resistant Mycobacterium tuberculosis isolates from the Russian Federation J Antimicrob Chemother 59 6 1057 1064 10.1093/jac/dkm086 17442757 (Pubitemid 47073315)
6. World Health Organization (WHO) (1998) Laboratory services in tuberculosis control. Part III: culture. WHO, Geneva
7. R Boom CJ Sol MM Salimans CL Jansen PM Wertheim-van Dillen J van der Noordaa 1990 Rapid and simple method for purification of nucleic acids J Clin Microbiol 28 495 503 1:CAS:528:DyaK3cXhvFCrsbY%3D 1691208
8. P Supply S Lesjean E Savine K Kremer D van Soolingen C Locht 2001 Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units J Clin Microbiol 39 3563 3571 1:CAS:528:DC%2BD3MXnslKiur0%3D 10.1128/JCM.39.10.3563-3571.2001 11574573 (Pubitemid 32954502)
9. R Frothingham WA Meeker-O'Connell 1998 Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats Microbiology 144 1189 1196 1:CAS:528:DyaK1cXjsVaitbY%3D 10.1099/00221287-144-5-1189 9611793
10. P Le Flèche M Fabre F Denoeud J-L Koeck G Vergnaud 2002 High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing BMC Microbiol 2 37 10.1186/1471-2180-2-37 12456266
11. RA Skuce TP McCorry JF McCarroll SM Roring AN Scott D Brittain SL Hughes RG Hewinson SD Neill 2002 Discrimination of Mycobacterium tuberculosis complex bacteria using novel VNTR-PCR targets Microbiology 148 519 528 1:CAS:528:DC%2BD38XhsFSmtLY%3D 11832515
12. S Roring A Scott D Brittain I Walker G Hewinson S Neill R Skuce 2002 Development of variable-number tandem repeat typing of Mycobacterium bovis: comparison of results with those obtained by using existing exact tandem repeats and spoligotyping J Clin Microbiol 40 2126 2133 1:CAS:528:DC%2BD38XltFOntLo%3D 10.1128/JCM.40.6.2126-2133.2002 12037076 (Pubitemid 34596396)
13. K Brudey JR Driscoll L Rigouts WM Prodinger A Gori SA Al-Hajoj C Allix L Aristimuño J Arora V Baumanis L Binder P Cafrune A Cataldi S Cheong R Diel C Ellermeier JT Evans M Fauville-Dufaux S Ferdinand D Garcia de Viedma C Garzelli L Gazzola HM Gomes MC Guttierez PM Hawkey PD van Helden GV Kadival BN Kreiswirth K Kremer M Kubin SP Kulkarni B Liens T Lillebaek ML Ho C Martin C Martin I Mokrousov O Narvskaïa YF Ngeow L Naumann S Niemann I Parwati Z Rahim V Rasolofo-Razanamparany T Rasolonavalona ML Rossetti S Rüsch-Gerdes A Sajduda S Samper IG Shemyakin UB Singh A Somoskovi RA Skuce D van Soolingen EM Streicher PN Suffys E Tortoli T Tracevska V Vincent TC Victor RM Warren SF Yap K Zaman F Portaels N Rastogi C Sola 2006 Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology BMC Microbiol 6 23 10.1186/1471-2180-6-23 16519816 (Pubitemid 43793192)
14. PR Hunter MA Gaston 1988 Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity J Clin Microbiol 26 11 2465 2466 1:STN:280:DyaL1M7nsFChsg%3D%3D 3069867
15. C Allix-Béguec D Harmsen T Weniger P Supply S Niemann 2008 Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates J Clin Microbiol 46 2692 2699 10.1128/JCM.00540-08 18550737
16. Federal Center of Hygiene and Epidemiology (2008) About sanitary-and-epidemiologic situation in Russian Federation in 2007: public report. Russian Federation, Moscow
17. SY Kovalev EY Kamaev MA Kravchenko NE Kurepina SN Skorniakov 2005 Genetic analysis of Mycobacterium tuberculosis strains isolated in Ural region, Russian Federation, by MIRU-VNTR genotyping Int J Tuberc Lung Dis 9 7 746 752 1:STN:280:DC%2BD2MzlvF2ksA%3D%3D 16013769
18. I Mokrousov T Otten T Zozio E Turkin V Nazemtseva A Sheremet B Vishnevsky O Narvskaya N Rastogi 2009 At Baltic crossroads: a molecular snapshot of Mycobacterium tuberculosis population diversity in Kaliningrad, Russia FEMS Immun Med Microbiol 55 1 13 22 1:CAS:528:DC%2BD1MXhtVKmt7g%3D 10.1111/j.1574-695X.2008.00470.x
19. MY Lipin VN Stepanshina IG Shemyakin TM Shinnick 2007 Association of specific mutations in katG, rpoB, rpsL and rrs genes with spoligotypes of multidrug-resistant Mycobacterium tuberculosis isolates in Russia Clin Microbiol Infect 13 6 620 626 1:CAS:528:DC%2BD2sXms1Okt70%3D 10.1111/j.1469-0691.2007. 01711.x 17403134 (Pubitemid 46730669)
20. TV Medvedeva OB Ogarkov OM Nekipelov IV Ushakov ES Koz'iakova RG Skvortsova 2004 MIRU-VNTR genotyping of Mycobacterium tuberculosis strains from East Siberian: Beijing family versus Kilimanjaro family Mol Gen Mikrobiol Virusol 4 33 38 15597570
21. JR Glynn J Whiteley PJ Bifani K Kremer D van Soolingen 2002 Worldwide occurrence of Beijing/W strains of Mycobacterium tuberculosis: a systematic review Emerg Infect Dis 8 8 843 849 12141971
22. A Krüüner SE Hoffner H Sillastu M Danilovits K Levina SB Svenson S Ghebremichael T Koivula G Källenius 2001 Spread of drug-resistant pulmonary tuberculosis in Estonia J Clin Microbiol 39 3339 3345 10.1128/JCM.39.9.3339-3345.2001 11526173 (Pubitemid 32830336)
23. R van Crevel RHH Nelwan W de Lenne Y Veeraragu AG van der Zanden Z Amin JW van der Meer D van Soolingen 2001 Mycobacterium tuberculosis Beijing genotype strains associated with febrile response to treatment Emerg Infect Dis 7 880 883 10.3201/eid0705.010518 11747703
24. B López D Aguilar H Orozco M Burger C Espitia V Ritacco L Barrera K Kremer R Hernandez-Pando K Huygen D van Soolingen 2003 A marked difference in pathogenesis and immune response induced by different Mycobacterium tuberculosis genotypes Clin Exp Immunol 133 30 37 10.1046/j.1365-2249.2003.02171.x 12823275 (Pubitemid 36791939)
25. IG Shemiakin VN Stepanshina OV Korobova VA Anisimova IIu Ivanov MIu Lipin AA Lazarev AI Skaldina LA Chernavskaia TI Tarasova 2002 Genetic typing of Mycobacterium tuberculosis strains by spoligotyping and genome fingerprinting techniques Zh Mikrobiol Epidemiol Immunobiol 6 30 35 12506624
26. F Drobniewski Y Balabanova V Nikolayevsky M Ruddy S Kuznetzov S Zakharova A Melentyev I Fedorin 2005 Drug-resistant tuberculosis, clinical virulence, and the dominance of the Beijing strain family in Russia JAMA 293 22 2726 2731 1:CAS:528:DC%2BD2MXltVCisrs%3D 10.1001/jama.293.22.2726 15941801 (Pubitemid 40965084)
27. OV Surikova DS Voitech G Kuzmicheva SI Tatkov IV Mokrousov OV Narvskaya MA Rot D van Soolingen ML Filipenko 2005 Efficient differentiation of Mycobacterium tuberculosis strains of the W-Beijing family from Russia using highly polymorphic VNTR loci Eur J Epidemiol 20 963 974 1:CAS:528: DC%2BD2MXht1Skt7bO 10.1007/s10654-005-3636-5 16284875 (Pubitemid 41609497)
28. I Mokrousov O Narvskaya E Limeschenko A Vyazovaya T Otten B Vyshnevskiy 2004 Analysis of the allelic diversity of the mycobacterial interspersed repetitive units in Mycobacterium tuberculosis strains of the Beijing family: practical implications and evolutionary considerations J Clin Microbiol 42 6 2438 2444 1:CAS:528:DC%2BD2cXlslamtbo%3D 10.1128/JCM.42.6.2438-2444.2004 15184416 (Pubitemid 38747486)
29. VV Nikolayevskyy TJ Brown YI Bazhora AA Asmolov YM Balabanova FA Drobniewski 2007 Molecular epidemiology and prevalence of mutations conferring rifampicin and isoniazid resistance in Mycobacterium tuberculosis strains from the southern Ukraine Clin Microbiol Infect 13 129 138 1:CAS:528: DC%2BD2sXis1Sjs74%3D 10.1111/j.1469-0691.2006.01583.x 17328724 (Pubitemid 46111608)
30. T Tracevska I Jansone V Baumanis O Marga T Lillebaek 2003 Prevalence of Beijing genotype in Latvian multidrug-resistant Mycobacterium tuberculosis isolates Int J Tuberc Lung Dis 7 1097 1103 1:STN:280:DC%2BD3sritVykug%3D%3D 14598971
31. B Mathema NE Kurepina PJ Bifani BN Kreiswirth 2006 Molecular epidemiology of tuberculosis: current insights Clin Microbiol Rev 19 658 685 1:CAS:528:DC%2BD28Xht1WjsL7L 10.1128/CMR.00061-05 17041139 (Pubitemid 44582976)
32. I Mokrousov HM Ly T Otten NN Lan B Vyshnevskyi S Hoffner O Narvskaya 2005 Origin and primary dispersal of the Mycobacterium tuberculosis Beijing genotype: clues from human phylogeography Genome Res 15 1357 1364 1:CAS:528:DC%2BD2MXhtFajurjK 10.1101/gr.3840605 16169923 (Pubitemid 41400901)
33. I Mokrousov O Narvskaya A Vyazovaya J Millet T Otten B Vishnevsky N Rastogi 2008 Mycobacterium tuberculosis Beijing genotype in Russia: in search of informative variable-number tandem-repeat loci J Clin Microbiol 46 3576 3584 10.1128/JCM.00414-08 18753356
34. S Bolotin DC Alexander P Chedore SJ Drews F Jamieson 2009 Molecular characterization of drug-resistant Mycobacterium tuberculosis isolates from Ontario, Canada J Antimicrob Chemother 64 2 263 266 1:CAS:528: DC%2BD1MXosFSrtb8%3D 10.1093/jac/dkp183 19520719
35. M Kourout I Chaoui R Sabouni O Lahlou M El Mzibri A Jordaan TC Victor M Akrim R El Aouad 2009 Molecular characterisation of rifampicin-resistant Mycobacterium tuberculosis strains from Morocco Int J Tuberc Lung Dis 13 11 1440 1442 1:STN:280:DC%2BD1MjitVSqsQ%3D%3D 19861020
36. T Luo M Zhao X Li P Xu X Gui S Pickerill K DeRiemer J Mei Q Gao 2010 Selection of mutations to detect multidrug-resistant Mycobacterium tuberculosis strains in Shanghai, China Antimicrob Agents Chemother 54 3 1075 1081 1:CAS:528:DC%2BC3cXjtFWqs7o%3D 10.1128/AAC.00964-09 20008778
37. M Murray 2002 Sampling bias in the molecular epidemiology of tuberculosis Emerg Infect Dis 8 363 369 10.3201/eid0804.000444 11971768 (Pubitemid 34415197)