Altitudinal and seasonal variation in microsatellite allele frequencies of Drosophila buzzatii

Journal of Evolutionary Biology

Volumn 24, Issue 2, 2011, Pages 430-439

  Barker, J S F ^a   Frydenberg, J ^b   Sarup, P ^b   Loeschcke, V ^b  

^a UNIVERSITY OF NEW ENGLAND   (Australia)

^b AARHUS UNIVERSITY   (Denmark)

Author keywords

Altitudinal adaptation; Chromosomal inversions; Climatic selection; Clinal variation; Genotype environment associations; Thermal selection

Indexed keywords

DNA; MICROSATELLITE DNA;

ADAPTIVE RADIATION; ALLELE; ALTITUDE; CHROMOSOME; CLIMATE VARIATION; FLY; FREQUENCY ANALYSIS; GENETIC MARKER; GENETIC VARIATION; GENOTYPE; HETEROZYGOSITY; LATITUDINAL GRADIENT; NONLINEARITY; POPULATION STRUCTURE; SEASONAL VARIATION; SELECTION; TEMPERATURE EFFECT;

ALLELE; ALTITUDE; ANIMAL; ARTICLE; CLASSIFICATION; DEMOGRAPHY; DROSOPHILA; GENETIC POLYMORPHISM; GENETICS; SEASON;

ALLELES; ALTITUDE; ANIMALS; DEMOGRAPHY; DNA; DROSOPHILA; MICROSATELLITE REPEATS; POLYMORPHISM, GENETIC; SEASONS;

ANIMALIA; DROSOPHILA BUZZATII;

EID: 78651454699     PISSN: 1010061X     EISSN: 14209101     Source Type: Journal    
DOI: 10.1111/j.1420-9101.2010.02180.x     Document Type: Article

References (48)

1. Andrewartha, H.G. & Birch, L.C. 1960. Some recent contributions to the study of the distribution and abundance of insects. Annu. Rev. Entomol. 5: 219-242.
2. Angilletta, M.J., Niewiarowski, P.H., Dunham, A.E., Leache, A.D. & Porter, W.P. 2004. Bergmann's clines in ectotherms: illustrating a life-history perspective with sceloporine lizards. Am. Nat. 164: E168-E183.
3. Balanya, J., Oller, J.M., Huey, R.B., Gilchrist, G.W. & Serra, L. 2006. Global genetic change tracks global climate warming in Drosophila subobscura. Science 313: 1773-1775.
4. Barker, J.S.F., Frydenberg, J., González, J., Davies, H.I., Ruiz, A., Sørensen, J.G. & Loeschcke, V. 2009. Bottlenecks, population differentiation and apparent selection at microsatellite loci in Australian Drosophila buzzatii. Heredity 102: 389-401 (Corrigendum -Heredity102: 626).
5. Bubliy, O.A. & Loeschcke, V. 2005. Variation of life-history and morphometrical traits in Drosophila buzzatii and Drosophila simulans collected along an altitudinal gradient from a Canary island. Biol. J. Linn. Soc. 84: 119-136.
6. Collinge, J.E., Hoffmann, A.A. & McKechnie, S.W. 2006. Altitudinal patterns for latitudinally varying traits and polymorphic markers in Drosophila melanogaster from eastern Australia. J. Evol. Biol. 19: 473-482.
7. Dahlgaard, J., Hasson, E. & Loeschcke, V. 2001. Behavioral differentiation in oviposition activity in Drosophila buzzatii from highland and lowland populations in Argentina: plasticity or thermal adaptation? Evolution 55: 738-747.
8. David, J.R., Allemand, R., Herrewege, J.v. & Cohet, Y. 1983. Ecophysiology: abiotic Factors. In: The Genetics and Biology of Drosophila, Vol. 3d (M. Ashburner, H.L. Carson & J.N.J. Thompson, eds), pp. 105-170. Academic Press, London.
9. David, J.R., Gibert, P., Gravot, E., Petavy, G., Morin, J.P., Karan, D. & Moreteau, B. 1997. Phenotypic plasticity and developmental temperature in Drosophila: analysis and significance of reaction norms of morphometrical traits. J. Therm. Biol. 22: 441-451.
10. Excoffier, L., Laval, G. & Schneider, S. 2005. Arlequin (ver. 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50.
11. Excoffier, L., Hofer, T. & Foll, M. 2009. Detecting loci under selection in a hierarchically structured population. Heredity 103: 285-298.
12. Folguera, G., Ceballos, S., Spezzi, L., Fanara, J.J. & Hasson, E. 2008. Clinal variation in developmental time and viability, and the response to thermal treatments in two species of Drosophila. Biol. J. Linn. Soc. 95: 233-245.
13. Fontdevila, A., Ruiz, A., Alonso, G. & Ocaña, J. 1981. Evolutionary history of Drosophila buzzatii. I. Natural chromosomal polymorphism in colonized populations of the old world. Evolution 35: 148-157.
14. Frydenberg, J., Pertoldi, C., Dahlgaard, J. & Loeschcke, V. 2002. Genetic variation in original and colonizing Drosophila buzzatii populations analysed by microsatellite loci isolated with a new PCR screening method. Mol. Ecol. 11: 181-190.
15. Gienapp, P., Teplitsky, C., Alho, J.S., Mills, J.A. & Merila, J. 2008. Climate change and evolution: disentangling environmental and genetic responses. Mol. Ecol. 17: 167-178.
16. Goudet, J. 2002. Fstat. A program to estimate and test gene diversities and fixation indices. 2.9.3.2. See.
17. Goudet, J. 2005. HIERFSTAT, a package for R to compute and test hierarchical F-statistics. Mol. Ecol. Notes 5: 184-186.
18. Hasson, E., Rodriguez, C., Fanara, J.J., Naveira, H., Reig, O.A. & Fontdevila, A. 1995. The evolutionary history of Drosophila buzzatii. XXVI. Macrogeographic patterns of inversion polymorphism in New World populations. J. Evol. Biol. 8: 369-384.
19. Hochberg, Y. 1988. A sharper Bonferroni procedure for multiple tests of significance. Biometrika 75: 800-802.
20. Hoffmann, A.A. & Rieseberg, L.H. 2008. Revisiting the Impact of Inversions in Evolution: from Population Genetic Markers to Drivers of Adaptive Shifts and Speciation? Annu. Rev. Ecol. Evol. Syst. 39: 21-42.
21. Hoffmann, A.A., Hallas, R.J., Dean, J.A. & Schiffer, M. 2003a. Low potential for climatic stress adaptation in a rainforest Drosophila species. Science 301: 100-102.
22. Hoffmann, A.A., Sørensen, J.G. & Loeschcke, V. 2003b. Adaptation of Drosophila to temperature extremes: bringing together quantitative and molecular approaches. J. Therm. Biol. 28: 175-216.
23. Iraeta, P., Salvador, A. & Diaz, J.A. 2008. A reciprocal transplant study of activity, body size, and winter survivorship in juvenile lizards from two sites at different altitude. Ecoscience 15: 298-304.
24. James, A.C. & Partridge, L. 1995. Thermal evolution of rate of larval development in Drosophila melanogaster in laboratory and field populations. J. Evol. Biol. 8: 315-330.
25. Karl, I., Schmitt, T. & Fischer, K. 2009. Genetic differentiation between alpine and lowland populations of a butterfly is related to PGI enzyme genotype. Ecography 32: 488-496.
26. Krimbas, C.B. & Powell, J.R. (eds) 1992. Drosophila Inversion Polymorphism. CRC Press, Boca Raton, Fla., USA.
27. van't Land, J., van Putten, P., Zwaan, B., Kamping, A. & van Delden, W. 1999. Latitudinal variation in wild populations of Drosophila melanogaster: heritabilities and reaction norms. J. Evol. Biol. 12: 222-232.
28. Laugen, A.T., Laurila, A., Rasanen, K. & Merila, J. 2003. Latitudinal countergradient variation in the common frog (Rana temporaria) development rates - evidence for local adaptation. J. Evol. Biol. 16: 996-1005.
29. Lessios, H.A. 1992. Testing electrophoretic data for agreement with Hardy-Weinberg expectations. Mar. Biol. 112: 517-523.
30. Loeschcke, V., Bundgaard, J. & Barker, J.S.F. 2000. Variation in body size and life history traits in Drosophila aldrichi and D. buzzatii from a latitudinal cline in eastern Australia. Heredity 85: 423-433.
31. McKechnie, S.W., Blacket, M.J., Song, S.V., Rako, L., Carroll, X., Johnson, T.K., Jensen, L.T., Lee, S.F., Wee, C.W. & Hoffmann, A.A. 2010. A clinally varying promoter polymorphism associated with adaptive variation in wing size in Drosophila. Mol. Ecol. 19: 775-784.
32. de Meeus, T. & Goudet, J. 2007. A step-by-step tutorial to use HierFstat to analyse populations hierarchically structured at multiple levels. Infect. Genet. Evol. 7: 731-735.
33. Mensch, J., Carreira, V., Lavagnino, N., Goenaga, J., Folguera, G., Hasson, E. & Fanara, J.J. 2010. Stage-specific effects of candidate heterochronic genes on variation in developmental time along an altitudinal cline of Drosophila melanogaster. PLoS ONE 5: e11229.
34. Merila, J. 2009. Genetic Constraints on Adaptation? Science 325: 1212-1213.
35. Meyer, H.W. 1992. Lapse rates and other variables applied to estimating paleoaltitudes from fossil floras. Palaeogeogr. Palaeoclimatol. Palaeoecol. 99: 71-99.
36. Norry, F.M., Sambucetti, P., Scannapieco, A.C. & Loeschcke, V. 2006. Altitudinal patterns for longevity, fecundity and senescence in Drosophila buzzatii. Genetica 128: 81-93.
37. Oakeshott, J.G., Gibson, J.B., Anderson, P.R., Knibb, W.R., Anderson, D.G. & Chambers, G.K. 1982. Alcohol dehydrogenase and glycerol-3-phosphate dehydrogenase clines in Drosophila melanogaster on different continents. Evolution 36: 86-96.
38. Piry, S., Alapetite, A., Cornuet, J.M., Paetkau, D., Baudouin, L. & Estoup, A. 2004. GENECLASS2: a software for genetic assignment and first-generation migrant detection. J. Hered. 95: 536-539.
39. Raymond, M. & Rousset, F. 1995. GENEPOP (Version 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 86: 248-249.
40. Sambucetti, P., Loeschcke, V. & Norry, F.M. 2006. Developmental time and size-related traits in Drosophila buzzatii along an altitudinal gradient from Argentina. Hereditas 143: 77-83.
41. Santos, M., Cespedes, W., Balanya, J., Trotta, V., Calboli, F.C.F., Fontdevila, A. & Serra, L. 2005. Temperature-related genetic changes in laboratory populations of Drosophila subobscura: evidence against simple climatic-based explanations for latitudinal clines. Am. Nat. 165: 258-273.
42. Sarup, P. & Loeschcke, V. 2010. Developmental acclimation affects clinal variation in heat resistance traits in Drosophila buzzatii J. Evol. Biol. 23: 957-965.
43. Sarup, P., Sørensen, J.G., Dimitrov, K., Barker, J.S.F. & Loeschcke, V. 2006. Climatic adaptation of Drosophila buzzatii populations in southeast Australia. Heredity 96: 479-486.
44. Sarup, P., Frydenberg, J. & Loeschcke, V. 2009. Local adaptation of stress related traits in Drosophila buzzatii and Drosophila simulans in spite of high gene flow. J. Evol. Biol. 22: 1111-1122.
45. Sørensen, J.G., Dahlgaard, J. & Loeschcke, V. 2001. Genetic variation in thermal tolerance among natural populations of Drosophila buzzatii: down regulation of Hsp70 expression and variation in heat stress resistance traits. Funct. Ecol. 15: 289-296.
46. Sørensen, J.G., Norry, F.M., Scannapieco, A.C. & Loeschcke, V. 2005. Altitudinal variation for stress resistance traits and thermal adaptation in adult Drosophila buzzatii from the New World. J. Evol. Biol. 18: 829-837.
47. Weeks, A.R., McKechnie, S.W. & Hoffmann, A.A. 2002. Dissecting adaptive clinal variation: markers, inversions and size/stress associations in Drosophila melanogaster from a central field population. Ecol. Lett. 5: 756-763.
48. Weir, B.S. & Cockerham, C.C. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.