-
1
-
-
0030875132
-
RRB1 and RRB2 encode maize retinoblastoma-related proteins that interact with a plant D-type cyclin and geminivirus replication protein
-
Ach, R. A., et al. 1997. RRB1 and RRB2 encode maize retinoblastoma- related proteins that interact with a plant D-type cyclin and geminivirus replication protein. Mol. Cell. Biol. 17:5077-5086.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 5077-5086
-
-
Ach, R.A.1
-
2
-
-
0034870112
-
An iteron-related domain is associated to motif 1 in the replication proteins of geminiviruses: Identification of potential interacting amino acid base pairs by a comparative approach
-
Arguello-Astorga, G. R., and R. Ruiz-Medrano. 2001. An iteron-related domain is associated to motif 1 in the replication proteins of geminiviruses: identification of potential interacting amino acid base pairs by a comparative approach. Arch. Virol. 146:1465-1485.
-
(2001)
Arch. Virol.
, vol.146
, pp. 1465-1485
-
-
Arguello-Astorga, G.R.1
Ruiz-Medrano, R.2
-
3
-
-
32144432437
-
The SWISS-MODEL workspace: A web-based environment for protein structure homology modeling
-
Arnold, K., L. Bordoli, J. Kopp, and T. Schwede. 2006. The SWISS-MODEL workspace: a web-based environment for protein structure homology modeling. Bioinformatics 22:195-201.
-
(2006)
Bioinformatics
, vol.22
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
4
-
-
77950234229
-
Lessons from the lysozyme of phage T4
-
Baase, W. A., L. Liu, D. E. Tronrud, and B. W. Matthews. 2010. Lessons from the lysozyme of phage T4. Protein Sci. 19:631-641.
-
(2010)
Protein Sci.
, vol.19
, pp. 631-641
-
-
Baase, W.A.1
Liu, L.2
Tronrud, D.E.3
Matthews, B.W.4
-
5
-
-
6344229839
-
PCNA interacts with Indian mung bean yellow mosaic virus Rep and downregulates Rep activity
-
Bagewadi, B., S. Chen, S. K. Lal, N. R. Choudhury, and S. K. Mukherjee. 2004. PCNA interacts with Indian mung bean yellow mosaic virus Rep and downregulates Rep activity. J. Virol. 78:11890-11903.
-
(2004)
J. Virol.
, vol.78
, pp. 11890-11903
-
-
Bagewadi, B.1
Chen, S.2
Lal, S.K.3
Choudhury, N.R.4
Mukherjee, S.K.5
-
6
-
-
37049014272
-
Version 1.2 of the crystallography and NMR system
-
Brunger, A. T. 2007. Version 1.2 of the crystallography and NMR system. Nat. Protoc. 2:2728-2733.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 2728-2733
-
-
Brunger, A.T.1
-
7
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brunger, A. T., et al. 1998. Crystallography and NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54:905-921.
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
-
8
-
-
0036678683
-
The structure of a replication initiator unites diverse aspects of nucleic acid metabolism
-
Campos-Olivas, R., J. M. Louis, D. Clerot, B. Gronenborn, and A. M. Gronenborn. 2002. The structure of a replication initiator unites diverse aspects of nucleic acid metabolism. Proc. Natl. Acad. Sci. U. S. A. 99:10310-10315.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 10310-10315
-
-
Campos-Olivas, R.1
Louis, J.M.2
Clerot, D.3
Gronenborn, B.4
Gronenborn, A.M.5
-
9
-
-
0041561087
-
Dual interaction of plant PCNA with geminivirus replication accessory protein (Ren) and viral replication protein (Rep)
-
Castillo, A. G., D. Collinet, S. Deret, A. Kashoggi, and E. R. Bejarano. 2003. Dual interaction of plant PCNA with geminivirus replication accessory protein (Ren) and viral replication protein (Rep). Virology 312:381-394.
-
(2003)
Virology
, vol.312
, pp. 381-394
-
-
Castillo, A.G.1
Collinet, D.2
Deret, S.3
Kashoggi, A.4
Bejarano, E.R.5
-
10
-
-
1542317734
-
Interaction between a geminivirus replication protein and the plant sumoylation system
-
Castillo, A. G., L. J. Kong, L. Hanley-Bowdoin, and E. R. Bejarano. 2004. Interaction between a geminivirus replication protein and the plant sumoylation system. J. Virol. 78:2758-2769.
-
(2004)
J. Virol.
, vol.78
, pp. 2758-2769
-
-
Castillo, A.G.1
Kong, L.J.2
Hanley-Bowdoin, L.3
Bejarano, E.R.4
-
11
-
-
33845601743
-
The oligomeric Rep protein of Mungbean yellow mosaic India virus (MYMIV) is a likely replicative helicase
-
Choudhury, N. R., et al. 2006. The oligomeric Rep protein of Mungbean yellow mosaic India virus (MYMIV) is a likely replicative helicase. Nucleic Acids Res. 34:6362-6377.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 6362-6377
-
-
Choudhury, N.R.1
-
12
-
-
33750691714
-
DNA helicase activity is associated with the replication initiator protein Rep of Tomato yellow leaf curl geminivirus
-
Clerot, D., and F. Bernardi. 2006. DNA helicase activity is associated with the replication initiator protein Rep of Tomato yellow leaf curl geminivirus. J. Virol. 80:11322-11330.
-
(2006)
J. Virol.
, vol.80
, pp. 11322-11330
-
-
Clerot, D.1
Bernardi, F.2
-
13
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks, G. E., G. Hon, J. M. Chandonia, and S. E. Brenner. 2004. WebLogo: a sequence logo generator. Genome Res. 14:1188-1190.
-
(2004)
Genome Res.
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
16
-
-
0029070826
-
Rep. protein of tomato yellow leaf curl geminivirus has an ATPase activity required for viral DNA replication
-
Desbiez, C., C. David, A. Mettouchi, J. Laufs, and B. Gronenborn. 1995. Rep. protein of tomato yellow leaf curl geminivirus has an ATPase activity required for viral DNA replication. Proc. Natl. Acad. Sci. U. S. A. 92:5640-5644.
-
(1995)
Proc. Natl. Acad. Sci. U. S. A.
, vol.92
, pp. 5640-5644
-
-
Desbiez, C.1
David, C.2
Mettouchi, A.3
Laufs, J.4
Gronenborn, B.5
-
17
-
-
0028484006
-
A DNA sequence required for geminivirus replication also mediates transcriptional regulation
-
DOI 10.1105/tpc.6.8.1157
-
Eagle, P. A., B. M. Orozco, and L. Hanley-Bowdoin. 1994. A DNA sequence required for geminivirus replication also mediates transcriptional regulation. Plant Cell 6:1157-1170. (Pubitemid 2137268)
-
(1994)
Plant Cell
, vol.6
, Issue.8
, pp. 1157-1170
-
-
Eagle, P.A.1
Orozco, B.M.2
Hanley-Bowdoin, L.3
-
18
-
-
0024297042
-
Genetic analysis of the tomato golden mosaic virus. II. The product of the AL1 coding sequence is required for replication
-
Elmer, J. S., et al. 1988. Genetic analysis of the tomato golden mosaic virus. II. The product of the AL1 coding sequence is required for replication. Nucleic Acids Res. 16:7043-7060.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 7043-7060
-
-
Elmer, J.S.1
-
19
-
-
0027394606
-
Similar hydrophobic replacements of Leu99 and Phe153 within the core of T4 lysozyme have different structural and thermodynamic consequences
-
Eriksson, A. E., W. A. Baase, and B. W. Matthews. 1993. Similar hydrophobic replacements of Leu99 and Phe153 within the core of T4 lysozyme have different structural and thermodynamic consequences. J. Mol. Biol. 229:747-769.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 747-769
-
-
Eriksson, A.E.1
Baase, W.A.2
Matthews, B.W.3
-
20
-
-
0026567907
-
Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect
-
Eriksson, A. E., et al. 1992. Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect. Science 255:178-183.
-
(1992)
Science
, vol.255
, pp. 178-183
-
-
Eriksson, A.E.1
-
21
-
-
43349106661
-
Geminivirus strain demarcation and nomenclature
-
Fauquet, C. M., et al. 2008. Geminivirus strain demarcation and nomenclature. Arch. Virol. 153:783-821.
-
(2008)
Arch. Virol.
, vol.153
, pp. 783-821
-
-
Fauquet, C.M.1
-
22
-
-
0028237883
-
Interaction between a geminivirus replication protein and origin DNA is essential for viral replication
-
Fontes, E. P., P. A. Eagle, P. S. Sipe, V. A. Luckow, and L. Hanley-Bowdoin. 1994. Interaction between a geminivirus replication protein and origin DNA is essential for viral replication. J. Biol. Chem. 269:8459-8465.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 8459-8465
-
-
Fontes, E.P.1
Eagle, P.A.2
Sipe, P.S.3
Luckow, V.A.4
Hanley-Bowdoin, L.5
-
23
-
-
0028385171
-
Geminivirus replication origins have a modular organization
-
Fontes, E. P., H. J. Gladfelter, R. L. Schaffer, I. T. Petty, and L. Hanley-Bowdoin. 1994. Geminivirus replication origins have a modular organization. Plant Cell 6:405-416.
-
(1994)
Plant Cell
, vol.6
, pp. 405-416
-
-
Fontes, E.P.1
Gladfelter, H.J.2
Schaffer, R.L.3
Petty, I.T.4
Hanley-Bowdoin, L.5
-
24
-
-
0026860201
-
A geminivirus replication protein is a sequence-specific DNA binding protein
-
Fontes, E. P., V. A. Luckow, and L. Hanley-Bowdoin. 1992. A geminivirus replication protein is a sequence-specific DNA binding protein. Plant Cell 4:597-608.
-
(1992)
Plant Cell
, vol.4
, pp. 597-608
-
-
Fontes, E.P.1
Luckow, V.A.2
Hanley-Bowdoin, L.3
-
25
-
-
0031469643
-
Two domains of the AL1 protein mediate geminivirus origin recognition
-
Gladfelter, H. J., P. A. Eagle, E. P. Fontes, L. Batts, and L. Hanley-Bowdoin. 1997. Two domains of the AL1 protein mediate geminivirus origin recognition. Virology 239:186-197.
-
(1997)
Virology
, vol.239
, pp. 186-197
-
-
Gladfelter, H.J.1
Eagle, P.A.2
Fontes, E.P.3
Batts, L.4
Hanley-Bowdoin, L.5
-
26
-
-
0029812702
-
A maize cDNA encoding a member of the retinoblastoma protein family: Involvement in endoreduplication
-
Grafi, G., et al. 1996. A maize cDNA encoding a member of the retinoblastoma protein family: involvement in endoreduplication. Proc. Natl. Acad. Sci. U. S. A. 93:8962-8967.
-
(1996)
Proc. Natl. Acad. Sci. U. S. A.
, vol.93
, pp. 8962-8967
-
-
Grafi, G.1
-
27
-
-
0033569633
-
Geminivirus DNA replication
-
Gutierrez, C. 1999. Geminivirus DNA replication. Cell. Mol. Life Sci. 56:313-329.
-
(1999)
Cell. Mol. Life Sci.
, vol.56
, pp. 313-329
-
-
Gutierrez, C.1
-
28
-
-
1642452599
-
Geminivirus DNA replication and cell cycle interactions
-
Gutierrez, C., et al. 2004. Geminivirus DNA replication and cell cycle interactions. Vet. Microbiol. 98:111-119.
-
(2004)
Vet. Microbiol.
, vol.98
, pp. 111-119
-
-
Gutierrez, C.1
-
29
-
-
0013817874
-
The influence of amino acid sequence on protein structure
-
Guzzo, A. V. 1965. The influence of amino acid sequence on protein structure. Biophys. J. 5:809-822.
-
(1965)
Biophys. J.
, vol.5
, pp. 809-822
-
-
Guzzo, A.V.1
-
30
-
-
0000335334
-
Complete nucleotide sequence of the infectious cloned DNA components of Tomato golden mosaic virus: Potential coding regions and regulatory sequences
-
Hamilton, W. D., V. E. Stein, R. H. Coutts, and K. W. Buck. 1984. Complete nucleotide sequence of the infectious cloned DNA components of Tomato golden mosaic virus: potential coding regions and regulatory sequences. EMBO J. 3:2197-2205.
-
(1984)
EMBO J.
, vol.3
, pp. 2197-2205
-
-
Hamilton, W.D.1
Stein, V.E.2
Coutts, R.H.3
Buck, K.W.4
-
31
-
-
0034099986
-
Geminiviruses: Models for plant DNA replication, transcription, and cell cycle regulation
-
Hanley-Bowdoin, L., S. B. Settlage, B. M. Orozco, S. Nagar, and D. Robertson. 2000. Geminiviruses: models for plant DNA replication, transcription, and cell cycle regulation. Crit. Rev. Biochem. Mol. Biol. 35:105-140.
-
(2000)
Crit. Rev. Biochem. Mol. Biol.
, vol.35
, pp. 105-140
-
-
Hanley-Bowdoin, L.1
Settlage, S.B.2
Orozco, B.M.3
Nagar, S.4
Robertson, D.5
-
32
-
-
1642310582
-
Reprogramming plant gene expression: A prerequisite to geminivirus DNA replication
-
Hanley-Bowdoin, L., S. B. Settlage, and D. Robertson. 2004. Reprogramming plant gene expression: a prerequisite to geminivirus DNA replication. Mol. Plant Pathol. 5:149-156.
-
(2004)
Mol. Plant Pathol.
, vol.5
, pp. 149-156
-
-
Hanley-Bowdoin, L.1
Settlage, S.B.2
Robertson, D.3
-
33
-
-
0028955414
-
Determination of the origin cleavage and joining domain of geminivirus Rep proteins
-
Heyraud-Nitschke, F., et al. 1995. Determination of the origin cleavage and joining domain of geminivirus Rep proteins. Nucleic Acids Res. 23:910-916.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 910-916
-
-
Heyraud-Nitschke, F.1
-
34
-
-
0026748738
-
Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes, and archaebacteria
-
Ilyina, T. V., and E. V. Koonin. 1992. Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes, and archaebacteria. Nucleic Acids Res. 20:3279-3285.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 3279-3285
-
-
Ilyina, T.V.1
Koonin, E.V.2
-
35
-
-
0035503315
-
DNA forms indicate rolling circle and recombination-dependent replication of Abutilon mosaic virus
-
Jeske, H., M. Lutgemeier, and W. Preiss. 2001. DNA forms indicate rolling circle and recombination-dependent replication of Abutilon mosaic virus. EMBO J. 20:6158-6167.
-
(2001)
EMBO J.
, vol.20
, pp. 6158-6167
-
-
Jeske, H.1
Lutgemeier, M.2
Preiss, W.3
-
36
-
-
58149193233
-
The SWISS-MODEL repository and associated resources
-
Kiefer, F., K. Arnold, M. Kunzli, L. Bordoli, and T. Schwede. 2009. The SWISS-MODEL repository and associated resources. Nucleic Acids Res. 37:D387-D392.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Kiefer, F.1
Arnold, K.2
Kunzli, M.3
Bordoli, L.4
Schwede, T.5
-
37
-
-
0030501419
-
Use of non-crystallographic symmetry in protein structure refinement
-
Kleywegt, G. J. 1996. Use of non-crystallographic symmetry in protein structure refinement. Acta Crystallogr. D Biol. Crystallogr. 52:842-857.
-
(1996)
Acta Crystallogr. D Biol. Crystallogr.
, vol.52
, pp. 842-857
-
-
Kleywegt, G.J.1
-
38
-
-
0036670286
-
A geminivirus replication protein interacts with a protein kinase and a motor protein that display different expression patterns during plant development and infection
-
Kong, L. J., and L. Hanley-Bowdoin. 2002. A geminivirus replication protein interacts with a protein kinase and a motor protein that display different expression patterns during plant development and infection. Plant Cell 14:1817-1832.
-
(2002)
Plant Cell
, vol.14
, pp. 1817-1832
-
-
Kong, L.J.1
Hanley-Bowdoin, L.2
-
39
-
-
0034600840
-
A geminivirus replication protein interacts with the retinoblastoma protein through a novel domain to determine symptoms and tissue specificity of infection in plants
-
Kong, L. J., et al. 2000. A geminivirus replication protein interacts with the retinoblastoma protein through a novel domain to determine symptoms and tissue specificity of infection in plants. EMBO J. 19:3485-3495.
-
(2000)
EMBO J.
, vol.19
, pp. 3485-3495
-
-
Kong, L.J.1
-
40
-
-
0026733368
-
Geminivirus replication proteins are related to prokaryotic plasmid rolling circle DNA replication initiator proteins
-
Koonin, E. V., and T. V. Ilyina. 1992. Geminivirus replication proteins are related to prokaryotic plasmid rolling circle DNA replication initiator proteins. J. Gen. Virol. 73:2763-2766.
-
(1992)
J. Gen. Virol.
, vol.73
, pp. 2763-2766
-
-
Koonin, E.V.1
Ilyina, T.V.2
-
42
-
-
0029042501
-
In vitro cleavage and joining at the viral origin of replication by the replication initiator protein of Tomato yellow leaf curl virus
-
Laufs, J., et al. 1995. In vitro cleavage and joining at the viral origin of replication by the replication initiator protein of Tomato yellow leaf curl virus. Proc. Natl. Acad. Sci. U. S. A. 92:3879-3883.
-
(1995)
Proc. Natl. Acad. Sci. U. S. A.
, vol.92
, pp. 3879-3883
-
-
Laufs, J.1
-
43
-
-
0034106349
-
Theoretical studies of the response of a protein structure to cavity- Creating mutations
-
Lee, J., K. Lee, and S. Shin. 2000. Theoretical studies of the response of a protein structure to cavity-creating mutations. Biophys. J. 78:1665-1671. (Pubitemid 30183565)
-
(2000)
Biophysical Journal
, vol.78
, Issue.4
, pp. 1665-1671
-
-
Lee, J.1
Lee, K.2
Shin, S.3
-
44
-
-
77954237291
-
DNA-binding specificity determinants of replication proteins encoded by eukaryotic ssDNA viruses are adjacent to widely separated RCR conserved motifs
-
Londono, A., L. Riego-Ruiz, and G. R. Arguello-Astorga. 2010. DNA-binding specificity determinants of replication proteins encoded by eukaryotic ssDNA viruses are adjacent to widely separated RCR conserved motifs. Arch. Virol. 155:1033-1046.
-
(2010)
Arch. Virol.
, vol.155
, pp. 1033-1046
-
-
Londono, A.1
Riego-Ruiz, L.2
Arguello-Astorga, G.R.3
-
45
-
-
21644488250
-
Vector NTI, a balanced all-in-one sequence analysis suite
-
Lu, G., and E. N. Moriyama. 2004. Vector NTI, a balanced all-in-one sequence analysis suite. Brief Bioinform. 5:378-388.
-
(2004)
Brief Bioinform.
, vol.5
, pp. 378-388
-
-
Lu, G.1
Moriyama, E.N.2
-
46
-
-
0036432920
-
Interaction of geminivirus rep protein with replication factor C and its potential role during geminivirus DNA replication
-
DOI 10.1006/viro.2002.1599
-
Luque, A., A. P. Sanz-Burgos, E. Ramirez-Parra, M. M. Castellano, and C. Gutierrez. 2002. Interaction of geminivirus Rep protein with replication factor C and its potential role during geminivirus DNA replication. Virology 302:83-94. (Pubitemid 35356857)
-
(2002)
Virology
, vol.302
, Issue.1
, pp. 83-94
-
-
Luque, A.1
Sanz-Burgos, A.P.2
Ramirez-Parra, E.3
Castellano, M.M.4
Gutierrez, C.5
-
47
-
-
20444412661
-
Interaction between coat protein and replication initiation protein of Mung bean yellow mosaic India virus might lead to control of viral DNA replication
-
Malik, P. S., V. Kumar, B. Bagewadi, and S. K. Mukherjee. 2005. Interaction between coat protein and replication initiation protein of Mung bean yellow mosaic India virus might lead to control of viral DNA replication. Virology 337:273-283.
-
(2005)
Virology
, vol.337
, pp. 273-283
-
-
Malik, P.S.1
Kumar, V.2
Bagewadi, B.3
Mukherjee, S.K.4
-
48
-
-
0029310496
-
A geminivirus induces expression of a host DNA synthesis protein in terminally differentiated plant cells
-
Nagar, S., T. J. Pedersen, K. M. Carrick, L. Hanley-Bowdoin, and D. Robertson. 1995. A geminivirus induces expression of a host DNA synthesis protein in terminally differentiated plant cells. Plant Cell 7:705-719.
-
(1995)
Plant Cell
, vol.7
, pp. 705-719
-
-
Nagar, S.1
Pedersen, T.J.2
Carrick, K.M.3
Hanley-Bowdoin, L.4
Robertson, D.5
-
49
-
-
67349093522
-
Evolution of geminiviruses and their satellites
-
Nawaz-ul-Rehman, M. S., and C. M. Fauquet. 2009. Evolution of geminiviruses and their satellites. FEBS Lett. 583:1825-1832.
-
(2009)
FEBS Lett.
, vol.583
, pp. 1825-1832
-
-
Nawaz-ul-Rehman, M.S.1
Fauquet, C.M.2
-
50
-
-
0032520598
-
Multiple cis elements contribute to geminivirus origin function
-
Orozco, B. M., et al. 1998. Multiple cis elements contribute to geminivirus origin function. Virology 242:346-356.
-
(1998)
Virology
, vol.242
, pp. 346-356
-
-
Orozco, B.M.1
-
51
-
-
0029655926
-
A DNA structure is required for geminivirus replication origin function
-
Orozco, B. M., and L. Hanley-Bowdoin. 1996. A DNA structure is required for geminivirus replication origin function. J. Virol. 70:148-158. (Pubitemid 126508780)
-
(1996)
Journal of Virology
, vol.70
, Issue.1
, pp. 148-158
-
-
Orozco, B.M.1
Hanley-Bowdoin, L.2
-
52
-
-
0032544416
-
Conserved sequence and structural motifs contribute to the DNA binding and cleavage activities of a geminivirus replication protein
-
Orozco, B. M., and L. Hanley-Bowdoin. 1998. Conserved sequence and structural motifs contribute to the DNA binding and cleavage activities of a geminivirus replication protein. J. Biol. Chem. 273:24448-24456.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 24448-24456
-
-
Orozco, B.M.1
Hanley-Bowdoin, L.2
-
53
-
-
0034010122
-
The multifunctional character of a geminivirus replication protein is reflected by its complex oligomerization properties
-
Orozco, B. M., L. J. Kong, L. A. Batts, S. Elledge, and L. Hanley-Bowdoin. 2000. The multifunctional character of a geminivirus replication protein is reflected by its complex oligomerization properties. J. Biol. Chem. 275:6114-6122.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 6114-6122
-
-
Orozco, B.M.1
Kong, L.J.2
Batts, L.A.3
Elledge, S.4
Hanley-Bowdoin, L.5
-
54
-
-
0030894969
-
Functional domains of a geminivirus replication protein
-
Orozco, B. M., A. B. Miller, S. B. Settlage, and L. Hanley-Bowdoin. 1997. Functional domains of a geminivirus replication protein. J. Biol. Chem. 272:9840-9846.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 9840-9846
-
-
Orozco, B.M.1
Miller, A.B.2
Settlage, S.B.3
Hanley-Bowdoin, L.4
-
55
-
-
15444381280
-
Protein modeling by E-mail
-
NY
-
Peitsch, M. C. 1995. Protein modeling by E-mail. Biotechnology (NY) 13:658-660.
-
(1995)
Biotechnology
, vol.13
, pp. 658-660
-
-
Peitsch, M.C.1
-
56
-
-
78651409647
-
Molecular genetics of Tomato golden mosaic virus
-
B. Staskawick, P. Ahlquist, and O. Yoder (ed.), Alan R. Liss, Inc., New York, NY
-
Rogers, S. G., Elmer, et al. 1989. Molecular genetics of Tomato golden mosaic virus, p. 199-215. In B. Staskawick, P. Ahlquist, and O. Yoder (ed.), Molecular biology of plant-pathogen interactions, Alan R. Liss, Inc., New York, NY.
-
(1989)
Molecular Biology of Plant-pathogen Interactions
, pp. 199-215
-
-
Rogers, S.G.1
Elmer2
-
57
-
-
0000425625
-
Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses
-
Rojas, M. R., R. L. Gilberson, D. R. Russell, and D. P. Maxwell. 1993. Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Dis. 77:340-347.
-
(1993)
Plant Dis.
, vol.77
, pp. 340-347
-
-
Rojas, M.R.1
Gilberson, R.L.2
Russell, D.R.3
Maxwell, D.P.4
-
58
-
-
24944550869
-
Exploiting chinks in the plant's armor: Evolution and emergence of geminiviruses
-
Rojas, M. R., C. Hagen, W. J. Lucas, and R. L. Gilbertson. 2005. Exploiting chinks in the plant's armor: evolution and emergence of geminiviruses. Annu. Rev. Phytopathol. 43:361-394.
-
(2005)
Annu. Rev. Phytopathol.
, vol.43
, pp. 361-394
-
-
Rojas, M.R.1
Hagen, C.2
Lucas, W.J.3
Gilbertson, R.L.4
-
59
-
-
58149204067
-
Voronoia: Analyzing packing in protein structures
-
Rother, K., P. W. Hildebrand, A. Goede, B. Gruening, and R. Preissner. 2009. Voronoia: analyzing packing in protein structures. Nucleic Acids Res. 37:D393-D395.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Rother, K.1
Hildebrand, P.W.2
Goede, A.3
Gruening, B.4
Preissner, R.5
-
60
-
-
84934434890
-
Geminivirus: Biolistic inoculation and molecular diagnosis
-
Santos, A. A., L. H. Florentino, A. B. Pires, and E. P. Fontes. 2008. Geminivirus: biolistic inoculation and molecular diagnosis. Methods Mol. Biol. 451:563-579.
-
(2008)
Methods Mol. Biol.
, vol.451
, pp. 563-579
-
-
Santos, A.A.1
Florentino, L.H.2
Pires, A.B.3
Fontes, E.P.4
-
61
-
-
0025008168
-
Sequence logos: A new way to display consensus sequences
-
Schneider, T. D., and R. M. Stephens. 1990. Sequence logos: a new way to display consensus sequences. Nucleic Acids Res. 18:6097-6100.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
62
-
-
0035864290
-
Dual interaction of a geminivirus replication accessory factor with a viral replication protein and a plant cell cycle regulator
-
Settlage, S. B., A. B. Miller, W. Gruissem, and L. Hanley-Bowdoin. 2001. Dual interaction of a geminivirus replication accessory factor with a viral replication protein and a plant cell cycle regulator. Virology 279:570-576.
-
(2001)
Virology
, vol.279
, pp. 570-576
-
-
Settlage, S.B.1
Miller, A.B.2
Gruissem, W.3
Hanley-Bowdoin, L.4
-
63
-
-
0029844843
-
Interactions between geminivirus replication proteins
-
Settlage, S. B., A. B. Miller, and L. Hanley-Bowdoin. 1996. Interactions between geminivirus replication proteins. J. Virol. 70:6790-6795.
-
(1996)
J. Virol.
, vol.70
, pp. 6790-6795
-
-
Settlage, S.B.1
Miller, A.B.2
Hanley-Bowdoin, L.3
-
64
-
-
33845619512
-
Geminivirus infection up-regulates the expression of two arabidopsis protein kinases related to yeast SNF1- and mammalian AMPK-activating kinases
-
DOI 10.1104/pp.106.088476
-
Shen, W., and L. Hanley-Bowdoin. 2006. Geminivirus infection up-regulates the expression of two Arabidopsis protein kinases related to yeast SNF1 and mammalian AMPK-activating kinases. Plant Physiol. 142:1642-1655. (Pubitemid 44956939)
-
(2006)
Plant Physiology
, vol.142
, Issue.4
, pp. 1642-1655
-
-
Shen, W.1
Hanley-Bowdoin, L.2
-
65
-
-
66649086822
-
Arabidopsis protein kinases GRIK1 and GRIK2 specifically activate SnRK1 by phosphorylating its activation loop
-
Shen, W., M. I. Reyes, and L. Hanley-Bowdoin. 2009. Arabidopsis protein kinases GRIK1 and GRIK2 specifically activate SnRK1 by phosphorylating its activation loop. Plant Physiol. 150:996-1005.
-
(2009)
Plant Physiol.
, vol.150
, pp. 996-1005
-
-
Shen, W.1
Reyes, M.I.2
Hanley-Bowdoin, L.3
-
66
-
-
33847382890
-
The 32-kDa subunit of replication protein a (RPA) participates in the DNA replication of Mung bean yellow mosaic India virus (MYMIV) by interacting with the viral Rep
-
Singh, D. K., M. N. Islam, N. R. Choudhury, S. Karjee, and S. K. Mukherjee. 2007. The 32-kDa subunit of replication protein A (RPA) participates in the DNA replication of Mung bean yellow mosaic India virus (MYMIV) by interacting with the viral Rep. protein. Nucleic Acids Res. 35:755-770.
-
(2007)
Protein. Nucleic Acids Res.
, vol.35
, pp. 755-770
-
-
Singh, D.K.1
Islam, M.N.2
Choudhury, N.R.3
Karjee, S.4
Mukherjee, S.K.5
-
67
-
-
52049122116
-
MYMIV replication initiator protein (Rep.): Roles at the initiation and elongation steps of MYMIV DNA replication
-
Singh, D. K., P. S. Malik, N. R. Choudhury, and S. K. Mukherjee. 2008. MYMIV replication initiator protein (Rep.): roles at the initiation and elongation steps of MYMIV DNA replication. Virology 380:75-83.
-
(2008)
Virology
, vol.380
, pp. 75-83
-
-
Singh, D.K.1
Malik, P.S.2
Choudhury, N.R.3
Mukherjee, S.K.4
-
68
-
-
13844291185
-
Geminiviridae
-
C. M. Fauquet, J. Maniloff, U. Desselberger, and L. A. Ball (ed.), Elsevier Academic Press, London, England
-
Stanley, J., et al. 2005. Geminiviridae, p. 301-326. In C. M. Fauquet, J. Maniloff, U. Desselberger, and L. A. Ball (ed.), Virus taxonomy. Eighth Report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, London, England.
-
(2005)
Virus Taxonomy. Eighth Report of the International Committee on Taxonomy of Viruses
, pp. 301-326
-
-
Stanley, J.1
-
69
-
-
0027261098
-
Tomato golden mosaic virus leftward gene expression: Autoregulation of geminivirus replication protein
-
Sunter, G., M. D. Hartitz, and D. M. Bisaro. 1993. Tomato golden mosaic virus leftward gene expression: autoregulation of geminivirus replication protein. Virology 195:275-280.
-
(1993)
Virology
, vol.195
, pp. 275-280
-
-
Sunter, G.1
Hartitz, M.D.2
Bisaro, D.M.3
-
70
-
-
0027509417
-
TGMV replication protein AL1 preferentially binds to single-stranded DNA from the common region
-
Thommes, P., T. A. Osman, R. J. Hayes, and K. W. Buck. 1993. TGMV replication protein AL1 preferentially binds to single-stranded DNA from the common region. FEBS Lett. 319:95-99.
-
(1993)
FEBS Lett.
, vol.319
, pp. 95-99
-
-
Thommes, P.1
Osman, T.A.2
Hayes, R.J.3
Buck, K.W.4
-
71
-
-
33947536545
-
Sequence and recombination analyses of the geminivirus replication initiator protein
-
DOI 10.1007/s12038-007-0003-6
-
Vadivukarasi, T., K. R. Girish, and R. Usha. 2007. Sequence and recombination analyses of the geminivirus replication initiator protein. J. Biosci. 32:17-29. (Pubitemid 46465754)
-
(2007)
Journal of Biosciences
, vol.32
, Issue.1
, pp. 17-29
-
-
Vadivukarasi, T.1
Girish, K.R.2
Usha, R.3
-
72
-
-
64249105731
-
A highly divergent South African geminivirus species illuminates the ancient evolutionary history of this family
-
Varsani, A., D. N. Shepherd, K. Dent., A. L. Monjane, E. P. Rybicki, and D. P. Martin. 2009. A highly divergent South African geminivirus species illuminates the ancient evolutionary history of this family. Virol. J. 6:36.
-
(2009)
Virol. J.
, vol.6
, pp. 36
-
-
Varsani, A.1
Shepherd, D.N.2
Dent, K.3
Monjane, A.L.4
Rybicki, E.P.5
Martin, D.P.6
-
73
-
-
33847235317
-
Solution structure, divalent metal and DNA binding of the endonuclease domain from the replication initiation protein from porcine circovirus 2
-
Vega-Rocha, S., I. J. Byeon, B. Gronenborn, A. M. Gronenborn, and R. Campos-Olivas. 2007. Solution structure, divalent metal and DNA binding of the endonuclease domain from the replication initiation protein from porcine circovirus 2. J. Mol. Biol. 367:473-487.
-
(2007)
J. Mol. Biol.
, vol.367
, pp. 473-487
-
-
Vega-Rocha, S.1
Byeon, I.J.2
Gronenborn, B.3
Gronenborn, A.M.4
Campos-Olivas, R.5
-
74
-
-
34249003761
-
1H, 13C, and 15N NMR assignment of the master Rep protein nuclease domain from the nanovirus FBNYV
-
Vega-Rocha, S., A. M. Gronenborn, B. Gronenborn, and R. Campos-Olivas. 2007. 1H, 13C, and 15N NMR assignment of the master Rep protein nuclease domain from the nanovirus FBNYV. J. Biomol. NMR 38:169.
-
(2007)
J. Biomol. NMR
, vol.38
, pp. 169
-
-
Vega-Rocha, S.1
Gronenborn, A.M.2
Gronenborn, B.3
Campos-Olivas, R.4
-
75
-
-
34249700716
-
Solution structure of the endonuclease domain from the master replication initiator protein of the nanovirus faba bean necrotic yellows virus and comparison with the corresponding geminivirus and circoviras structures
-
DOI 10.1021/bi700159q
-
Vega-Rocha, S., B. Gronenborn, A. M. Gronenborn, and R. Campos-Olivas. 2007. Solution structure of the endonuclease domain from the master replication initiator protein of the nanovirus faba bean necrotic yellows virus and comparison with the corresponding geminivirus and circovirus structures. Biochemistry 46:6201-6212. (Pubitemid 46842863)
-
(2007)
Biochemistry
, vol.46
, Issue.21
, pp. 6201-6212
-
-
Vega-Rocha, S.1
Gronenborn, B.2
Gronenborn, A.M.3
Campos-Olivas, R.4
-
76
-
-
0029124903
-
Identification and analysis of a retinoblastoma binding motif in the replication protein of a plant DNA virus: Requirement for efficient viral DNA replication
-
Xie, Q., P. Suarez-Lopez, and C. Gutierrez. 1995. Identification and analysis of a retinoblastoma binding motif in the replication protein of a plant DNA virus: requirement for efficient viral DNA replication. EMBO J. 14:4073-4082.
-
(1995)
EMBO J.
, vol.14
, pp. 4073-4082
-
-
Xie, Q.1
Suarez-Lopez, P.2
Gutierrez, C.3
-
77
-
-
0031893269
-
The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect
-
Xu, J., W. A. Baase, E. Baldwin, and B. W. Matthews. 1998. The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect. Protein Sci. 7:158-177.
-
(1998)
Protein Sci.
, vol.7
, pp. 158-177
-
-
Xu, J.1
Baase, W.A.2
Baldwin, E.3
Matthews, B.W.4
|