Possible editing of Alu transcripts in blood cells of sporadic Creutzfeldt-Jakob disease (sCJD)

Journal of Toxicology and Environmental Health - Part A: Current Issues

Volumn 74, Issue 2-4, 2011, Pages 88-95

  Kiesel, Petra ^a   Gibson, Toby J ^b   Ciesielczyk, Barbara ^d   Bodemer, Monika ^d   Kaup, Franz Josef ^a   Bodemer, Walter ^a   Zischler, Hans ^c   Zerr, Inga ^d  

^a GERMAN PRIMATE CENTER   (Germany)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^c JOHANNES GUTENBERG UNIVERSITY   (Germany)

^d UNIVERSITY OF GÖTTINGEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE DEAMINASE; APOLIPOPROTEIN B; COMPLEMENTARY DNA; DNA; PRION PROTEIN; RNA;

ALZHEIMER DISEASE; ANIMAL EXPERIMENT; ARTICLE; BLOOD CELL; CHIMPANZEE; CONTROLLED STUDY; DEAMINATION; DEMENTIA; DNA SEQUENCE; DNA TRANSCRIPTION; FEMALE; GENE MUTATION; GENETIC TRANSCRIPTION; GENOMICS; GENOTYPE; HUMAN; HUMAN CELL; MALE; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; RHESUS MONKEY; SPORADIC CREUTZFELDT JAKOB DISEASE;

ALU ELEMENTS; ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; CREUTZFELDT-JAKOB SYNDROME; DNA, COMPLEMENTARY; HUMANS; MACACA MULATTA; MOLECULAR SEQUENCE DATA; PAN TROGLODYTES; PRIONS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA; RNA EDITING; SEQUENCE ALIGNMENT; TRANSCRIPTION, GENETIC;

PAN;

EID: 78651354963     PISSN: 15287394     EISSN: 10872620     Source Type: Journal    
DOI: 10.1080/15287394.2011.529057     Document Type: Article

References (21)

1. Bernard, A., Ferhat, L., Dessi, F., Charton, G., Represa, A., Ben-Ari, Y., and Khrestchatisky, M. 2009. Q/R editing of the rat GluR5 and GluR6 kainate receptors in vivo and in vitro: Evidence for independent developmental, pathological and cellular regulation. Eur. J. Neurosci. 11:604-616.
2. Chiu, Y. L., Witkowska, H. E., Hall, S. C., Santiago, M., Soros, V. B., Esnault, C., Heidmann, T., and Greene, W. C. 2006. High-molecular-mass APOBEC3G complexes restrict Alu retrotransposition. Proc. Natl. Acad. Sci. USA 103:15588-15593.
3. DeCerbo, J., and Carmichael, G. C. 2005. SINEs point to abundant editing in the human genome. Genome Biol. 6:216.
4. Ebhardt, H. A., Tsang, H. H., Dai, D. C., Liu, Y., Bostan, B., and Fahlmann, R. P. 2009. Metaanalysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications. Nucleic Acids Res. 2:1-10.
5. Ensterö, M., Akerborg, O., Lundin, D., Wang, B., Furey, T.S., Ohman, M., and Lagergren, J. 2010. A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins. BMC Bioinformatics 11:6.
6. Esnault, C., Millet, J., Schwartz, O., and Heidmann, T. 2006. Dual inhibitory effects of APOBEC family proteins on retrotransposition of mammalian endogenous retroviruses. Nucleic Acids Res. 34: 1522-1531.
7. Goodier, J. L., and Kazazian, H. H. 2008. Retrotransposons revisited: the restraint and rehabilitation of parasites. Cell 135:23-35.
8. Kiesel, P. T., Giobson, J., Ciesielczyk, B., Bodemer, M., Kaup, F. J., Bodemer, W., Zischler, H., and Zerr, I. 2010. Transcription of Alu DNA elements in blood cells of sporadic Creutzfeldt-Jakob disease (sCJD). Prion 4: epub ahead of print.
9. Kim, D. D., Kim, T. T., Walsh, T., Kobayashi, Y., Matise, T. C., Buyske, S., and Gabriel, A. 2004. Widespread RNA editing of embedded Alu elements in the human transcriptome. Genome Res. 14:1719-1725.
10. Kuhn, R. M., Karolchik, D., Zweig, A. S., Wang, T., Smith, K. E., Rosenbloom, K. R., Rhead, B., Raney, B. J., Pohl, A., Pheasant, M., Meyer, L., Hsu, F., Hinrichs, A. S., Harte, R. A., Giardine, B., Fujita, P., Diekhans, M., Dreszer, T., Clawson, H., Barber, G. P., Haussler, D., and Kent, W. J. 2009. The UCSC genome browser database: Update 2009. Nucleic Acids Res. 37 (Database issue):D755-D761.
11. Kwak, S., Nishimoto, Y., and Yamashita, T. 2008. Newly identified ADAR-mediated A-to-I editing for ALS research. RNA Biol. 5:193-197.
12. Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R., Thompson, J. D., Gibson, T. J., and Higgins, D. G. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23:2947-2948.
13. Malim, M. H. 2006. Natural resistance to HIV infection: The Vif-APOBEC interaction. C. R.Biol. 329:871-875.
14. Mattick, J. S., and Mehler, M. F. 2008. RNA editing, DNA recoding and the evolution of human cognition. Trends Neurosci. 31:227-233.
15. Panning, B., and Smiley, J. R. 1995. Activation of expression of multiple subfamilies of human Alu elements by adenovirus type 5 and herpes simplex virus type 1. J. Mol. Biol. 248:513-524.
16. Paz, N., Levanon, E. Y., Amariglio, N., Heimberger, A. B., Ram, Z., Constantini, S., Barbash, Z. S., Adamsky, K., Safran, M., Hirschberg, A., Krupsky, M., Ben- Dov, I., Cazacu, S., Mikkelsen, T., Brodie, C., Eisenberg, E., and Rechavi, G. 2007. Altered adenosine-to-inosine RNA editing in human cancer. Genome Res. 17: 1586-1595.
17. Rubin, C. M., Kimura, R. H., and Schmid, C.W. 2002. Selective stimulation of translational expression by Alu RNA. Nucleic Acids Res. 30:3253-3261.
18. Sayers, E. W., Barrett, T., Benson, D. A., Bryant, S. H., Canese, K., Chetvernin, V., Church, D. M., DiCuccio, M., Edgar, R., Federhen, S., Feolo, M., Geer, L. Y., Helmberg, W., Kapustin, Y., Landsman, D., Lipman, D. J., Madden, T. L., Maglott, D. R., Miller, V., Mizrachi, I., Ostell, J., Pruitt, K. D., Schuler, G. D., Sequeira, E., Sherry, S. T., Shumway, M., Sirotkin, K., Souvorov, A., Starchenko, G., Tatusova, T. A., Wagner, L., Yaschenko, E., and Ye, J. 2009. Database resources of the National Center for Biotechnology. Nucleic Acids Res. 37 (Database issue):D 5-D15.
19. Stopak, K. S., Chiu, Y. L., Kropp, J., Grant, R. M., and Greene, W. 2007. Distinct pattern of cytokine regulation of APOBEC3G expression and activity in primary lymphocytes, macrophages, and dendritic cells. J. Biol. Chem. 282:3539-3546.
20. Sun, F. J., Fleurdépine, S., Bouquet-Antonelli, C., Caetano-Anollés, G., and Deragon, J.M. 2007. Common evolutionary trends for SINE RNA structures. Trends Genet. 23: 26-33.
21. Zilberman, D. E., Safran, M., Paz, N., Amariglio, N., Simon, A., Fridman, E., Kleinmann, N., Ramon, J., and Rechavi, G. 2009. Does RNA editing play a role in the development of urinary bladder cancer? Urol. Oncol. Jan 29, e-pub ahead of print.