Multiscale computer design of photonic crystal based materials for optical chemosensors

Nanotechnologies in Russia

Volumn 5, Issue 3, 2010, Pages 250-258

  Alfimov, M V ^a   Bagatur'yants, A A ^a   Safonov, A A ^a   Scherbinin, A V ^b   Vladimirova, K G ^b   Belousov, S A ^c,d   Bogdanova, M V ^c   Valuev, I A ^c   Deinega, A V ^c   Lozovik, Yu E ^c,e   Potapkin, B V ^c,d  

^a PHOTOCHEMISTRY CENTER   (Russian Federation)

^b MOSCOW STATE UNIVERSITY   (Russian Federation)

^c KINTECH LAB LTD   (Russian Federation)

^d KURCHATOV INSTITUTE   (Russian Federation)

^e INSTITUTE OF SPECTROSCOPY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION AND EMISSION SPECTRA; COMPUTER DESIGNS; ELECTROMAGNETIC EMISSIONS; EMISSION SPECTRUMS; END-TO-END SIMULATION; FIRST-PRINCIPLES; MODELING ELEMENTS; MULTISCALE METHOD; MULTISCALES; OPTICAL CHEMOSENSORS; THREE DIMENSIONAL PHOTONIC CRYSTALS;

EMISSION SPECTROSCOPY; FINITE DIFFERENCE TIME DOMAIN METHOD;

PHOTONIC CRYSTALS;

EID: 78651301228     PISSN: 19950780     EISSN: 19950799     Source Type: Journal    
DOI: 10.1134/S1995078010030134     Document Type: Article

References (37)

1. M. V. Alfimov, "Nanotechnologies: The Role of Computer Simulation," Ross. Nanotekhnol. 2(7), 1-5 (2007).
2. G. Nicolis and I. Prigogine, Self-Organization in Non-equilibrium Systems: From Dissipative Structures to Order through Fluctuations (Wiley, New York, 1977; Mir, Moscow, 1979).
3. J. Park, J. Moon, H. Shin, D. Wang, and M. Park, "Direct-Write Fabrication of Colloidal Photonic Crystal Microarrays by Ink-Jet Printing," J. Colloid Interface Sci. 298, 713-719 (2006).
4. L. V. Andreeva, D. A. Ivanov, D. S. Ionov, A. V. Koshkin, P. V. Lebedev-Stepanov, O. Yu. Rybakov, A. S. Sinitsky, A. N. Petrov, and M. V. Alfimov, "Investigations of Crystallization of Solutions in Microdroplets on an Affymetrix GMS 417 Arrayer Device," Prib. Tekh. Eksp., No. 6, 1-8 (2006) [Instrum. Exp. Tech. 49 (6), 860-867 (2006)].
5. L. V. Andreeva, A. V. Koshkin, P. V. Lebedev-Stepanov, A. N. Petrov, and M. V. Alfimov, "Driving Forces of the Solute Self-Organization in an Evaporating Liquid Microdroplet," Colloids Surf. A: Physicochem. Eng. Aspects 300, 300-306 (2007).
6. E. Yablonovitch, "Inhibited Spontaneous Emission in Solid-State Physics and Electronics," Phys. Rev. Lett. 58, 2059-2062 (1987).
7. W. Zhang, N. Ganesh, I. D. Block, and B. T. Cunningham, "High-Sensitivity Photonic Crystal Biosensor Incorporating Nanorod Structures for Enhanced Surface Area," Sens. Actuators B: Chem. 131(1), 279-284 (2008).
8. H. J. Kim, S. Kim, H. Jeon, J. Ma, S. H. Choi, S. Lee, C. Ko, and W. Park, "Fluorescence Amplification Using Colloidal Photonic Crystal Platform in Sensing Dye-Labeled Deoxyribonucleic Acids," Sens. Actuators B: Chem. 124(1), 147-152 (2007).
9. Zhengwen Yang, Xinran Zhou, Xueguang Huang, Ji Zhou, Gang Yang, Qin Xie, Li Sun, and Bo Li, "Energy Transfer between Fluorescent Dyes in Photonic Crystals," Opt. Lett. 33(17), 1963-1965 (2008); Yu. A. Uspenskii, E. T. Kulatov, A. A. Titov, S. A. Belousov, M. V. Bogdanova, I. A. Valuev, A. V. Deinega, S. L. Eiderman, Yu. E. Lozovik, B. V. Potapkin, A. A. Knizhnik, I. V. Polischuk, "Predictive Modeling of Optical Properties of Metallo-Dielectric Metamaterials," Izv. Vyssh. Uchebn. Zaved., Fizika 11, 20 (2009).
10. Dirk Englund, David Fattal, Edo Waks, Glenn Solomon, Bingyang Zhang, Toshihiro Nakaoka, Yasuhiko Arakawa, Yoshihisa Yamamoto, and Jelena Vückovíc, "Controlling the Spontaneous Emission Rate of Single Quantum Dots in a Two-Dimensional Photonic Crystal," Phys. Rev. Lett. 95, article 013 904 (4 pages) (2005).
11. C. Hägglund, M. Zäch, and Bengt Kasemo, "Enhanced Charge Carrier Generation in Dye Sensitized Solar Cells by Nanoparticle Plasmons," Appl. Phys. Lett. 92, article 013 113 (3 pages) (2008).
12. M. A. L. Marques and E. K. U. Gross, "Time-Dependent Density Functional Theory," Annu. Rev. Phys. Chem. 55, 427-455 (2004).
13. J. Werschnik, E. K. U. Gross, and K. Burke, "Time-Dependent Density Functional Theory: Past, Present, and Future," J. Chem. Phys. 123, article 062 206 (9 pages) (2005).
14. A. Dreuw and M. Head-Gordon, "Single-Reference Ab Initio Methods for the Calculation of Excited States of Large Molecules," Chem. Rev. (Washington) 105, 4009-4037 (2005).
15. V. G. Plotnikov, V. A. Sazhnikov, and M. V. Alfimov, "Intermolecular Interactions and Spectral and Luminescence Properties of Optical Molecular Sensors," Khim. Vys. Energ. 41(5), 349-362 (2007) [High Energy Chem. 41 (5), 299-311 (2007)].
16. A. Taflove and S. C. Hagness, Computational Electrodynamics: The Finite Difference Time-Domain Method (Artech House, Norwood, MA, United States, 2005).
17. J. Fabian, L. A. Diaz, G. Seifert, and T. Niehaus, "Calculation of Excitation Energies of Organic Chromophores: A Critical Evaluation," J. Mol. Struct.: THEOCHEM 594, 41-53 (2002).
18. I. Baraldi, M. Caselli, F. Momicchioli, G. Ponterini, and D. Vanossi, "Dimerization of Green Sensitizing Cyanines in Solution: A Spectroscopic and Theoretical Study of the Bonding Nature," Chem. Phys. 275, 149-165 (2002).
19. P. Millíe, F. Momicchioli, and D. Vanossi, "Exciton Effects in the Dimer and Higher Aggregates of a Simple Merocyanine Dye: A CS INDO CI Based Theoretical Study," J. Phys. Chem. B 104, 9621-9629 (2000).
20. T. Helgaker, P. Jorgensen, and J. Olsen, Molecular Electronic-Structure Theory (Wiley, New York, 2000).
21. S. I. Pekar, "On the Influence of the Electron-Assisted Deformation of Lattices on the Optical and Electrical Properties of Crystals," Usp. Fiz. Nauk 50(6), 197 (1953).
22. K. Sakoda, Optical Properties of Photonic Crystals (Springer, New York, 2001).
23. A. Moroz, "Density-of-States Calculations and Multiple-Scattering Theory for Photons," Phys. Rev. B: Condens. Matter 51, 2068-2081 (1995).
24. N. Stefanou, V. Yannopapas, and A. Modinos, "MULTEM2: A New Version of a Program for Transmission and Band-Structure Calculations of Photonic Crystals," Comput. Phys. Commun. 132, 189-196 (2000).
25. G. Gantzounis and N. Stefanou, "Layer-Multiple-Scattering Method for Photonic Crystals of Nonspherical Particles," Phys. Rev. B: Condens. Matter 73, article 035 115 (10 pages) (2006).
26. J. B. Pendry, "Photonic Band Structures," J. Mod. Opt. 41, 209-229 (1994).
27. Z. Y. Li and L. L. Lin, "Photonic Band Structures Solved by a Plane-Wave-Based Transfer-Matrix Method," Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys. 67, article 046 607 (11 pages) (2003).
28. V. Shankar, A. Mohammadian, and W. F. Hall, "A Time-Domain, Finite-Volume Treatment for the Maxwell Equations," Electromagnetics 10, 127-145 (1990).
29. MIT Electromagnetic Equation Propagation, http://ab-initio. mit. edu/wiki/index. php/Meep.
30. I. Valuev, A. Deinega, A. Knizhnik, and B. Potapkin, "Creating Numerically Efficient FDTD Simulations Using Generic C++ Programming," Lect. Notes Comput. Sci. 4707, 213-226 (2007).
31. A. Deinega and I. Valuev, "Subpixel Smoothing for Conductive and Dispersive Media in the Finite-Difference Time-Domain Method," Opt. Lett. 32(23), 3429-3431 (2007).
32. I. Valuev, A. Deinega, and S. Belousov, "Iterative Technique for Analysis of Periodic Structures at Oblique Incidence in the Finite-Difference Time-Domain Method," Opt. Lett. 33, 1491-1493 (2008).
33. A. Deinega, S. Belousov, and I. Valuev, "Hybrid Transfer-Matrix FDTD Method for Layered Periodic Structures," Opt. Lett. 34, 860-862 (2009).
34. Yu. A. Uspenskii, E. T. Kulatov, A. A. Titov, S. A. Belousov, M. V. Bogdanova, I. A. Valuev, A. V. Deinega, S. L. Eiderman, Yu. E. Lozovik, and B. V. Potapkin, "Predictive Simulation of Energy-Conserving Thermal Optical Sources Based on Metallo-Dielectric Metamaterials," in Abstracts of Papers of the Second All-Russian Conference "Multi-Scale Modeling of Processes and Structures in Nanotechnologies," Moscow, Russia, 2009 (Moscow, 2009), pp. 329-330.
35. V. A. Sazhnikov, A. A. Khlebunov, and M. V. Alfimov, "Solvatofluorochromic Properties of 2, 7-Dimethyl-9-(Ditolylamino)acridine," Khim. Vys. Energ. 41(1), 28-31 (2007) [High Energy Chem. 41 (1), 25-28 (2007)].
36. M. Megens, J. E. G. J. Wijnhoven, A. Lagendijk, and W. L. Vos, "Fluorescence Lifetimes and Linewidths of Dye in Photonic Crystals," Phys. Rev. A: At., Mol., Opt. Phys. 59, 4727-4731 (1999).
37. H. Chew, "Transition Rates of Atoms near Spherical Surfaces," J. Chem. Phys. 87, article 1355 (6 pages) (1987).