Continuum electromechanical modeling of protein-membrane interactions

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 82, Issue 4, 2010, Pages

  Zhou, Y C ^a   Lu, Benzhuo ^b   Gorfe, Alemayehu A ^c  

^a Department of Environmental and Radiological Health Sciences   (United States)

^b INSTITUTE OF COMPUTATIONAL MATHEMATICS AND SCIENTIFIC ENGINEERING COMPUTING   (China)

^c UNIVERSITY OF TEXAS MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIELECTRIC INTERFACE; ELECTROMECHANICAL MODELING; ELECTROMECHANICAL MODELS; ELECTROSTATIC INTERACTIONS; ENERGY FUNCTIONALS; GEOMETRY COMPLEXITY; MACROSCOPIC STRAINS; MEMBRANE CURVATURE; MEMBRANE SYSTEM; PROTEIN-MEMBRANE INTERACTIONS; SOLVATION ENERGY;

ELECTROSTATICS;

MEMBRANES;

EID: 78651281333     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.82.041923     Document Type: Article

References (21)

1. A. J. Ridley, M. A. Schwartz, K. Burridge, R. A. Firtel, M. H. Ginsberg, G. Borisy, J. T. Parsons, and A. R. Horwitz, Science 302, 1704 (2003). 10.1126/science.1092053
2. W. Cho and R. V. Stahelin, Annu. Rev. Biophys. Biomol. Struct. 34, 119 (2005). 10.1146/annurev.biophys.33.110502.133337
3. P. Wiggins and R. Phillips, Biophys. J. 88, 880 (2005). 10.1529/biophysj.104.047431
4. B. J. Peter, H. M. Kent, I. G. Mills, Y. Vallis, P. Jonathan, G. Butler, P. R. Evans, and H. T. McMahon, Science 303, 495 (2004). 10.1126/science.1092586
5. S. Saksena, J. Sun, T. Chu, and S. D. Emr, Trends Biochem. Sci. 32, 561 (2007). 10.1016/j.tibs.2007.09.010
6. P. D. Blood and G. A. Voth, Proc. Natl. Acad. Sci. U.S.A. 103, 15068 (2006). 10.1073/pnas.0603917103
7. D. K. Fygenson, J. F. Marko, and A. Libchaber, Phys. Rev. Lett. 79, 4497 (1997). 10.1103/PhysRevLett.79.4497
8. G. Fabrikant, S. Lata, J. D. Riches, J. A. G. Briggs, W. Weissenhorn, and M. M. Kozlov, PLOS Comput. Biol. 5, e1000575 (2009). 10.1371/journal.pcbi. 1000575
9. A. Arkhipov, Y. Yin, and K. Schulten, Biophys. J. 95, 2806 (2008). 10.1529/biophysj.108.132563
10. W. S. Klug, R. F. Bruinsma, J. P. Michel, C. M. Knobler, I. L. Ivanovska, C. F. Schmidt, and G. J. L. Wuite, Phys. Rev. Lett. 97, 228101 (2006). 10.1103/PhysRevLett.97.228101
11. S. Choe, K. A. Hecht, and M. Grabe, J. Gen. Physiol. 131, 563 (2008). 10.1085/jgp.200809959
12. A. G. Petrov and F. Sachs, Phys. Rev. E 65, 021905 (2002). 10.1103/PhysRevE.65.021905
13. K. A. Sharp and B. Honig, J. Phys. Chem. 94, 7684 (1990). 10.1021/j100382a068
14. Y. C. Zhou, M. Holst, and J. A. McCammon, J. Math. Anal. Appl. 340, 135 (2008). 10.1016/j.jmaa.2007.07.084
15. M. K. Gilson, M. E. Davis, B. A. Luty, and J. A. McCammon, J. Phys. Chem. 97, 3591 (1993). 10.1021/j100116a025
16. B. Lu, M. J. Holst, J. A. McCammon, and Y. C. Zhou, J. Comput. Phys. 229, 6979 (2010). 10.1016/j.jcp.2010.05.035
17. P. G. Ciarlet, Mathematical Elasticity (North-Holland, Amsterdam, 1987), Vol. I.
18. A replicated 5 × 2 system has a surface area 251 × 98 Å 2, each unit having 36 lipids in its monolayer. Only 30% of lipids have a unit negatively charged head group. The surface charge density is then 5 × 2 × 36 × 0.3 / (251 × 98) = 0.0044.
19. Y. Tang, G. Cao, X. Chen, J. Yoo, A. Yethiraj, and Q. Cui, Biophys. J. 91, 1248 (2006). 10.1529/biophysj.106.085985
20. B. Li, SIAM J. Math. Anal. 40, 2536 (2009). 10.1137/080712350
21. N. Kikuchi and J. T. Oden, Contact Problems in Elasticity: A Study of Variational Inequalities and Finite Element Methods (SIAM, Philadelphia, 1988).