AHD2.0: An update version of arabidopsis hormone database for plant systematic studies

Nucleic Acids Research

Volumn 39, Issue SUPPL. 1, 2011, Pages

  Jiang, Zhiqiang ^a   Liu, Xiaochuan ^a   Peng, Zhiyu ^b   Wan, Yinan ^a   Ji, Yusi ^a   He, Wenrong ^a   Wan, Wen ^a   Luo, Jingchu ^a   Guo, Hongwei ^a  

^a PEKING UNIVERSITY   (China)

^b BGI SHENZHEN   (China)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; PHYTOHORMONE;

AHD2.0; ARABIDOPSIS; ARABIDOPSIS HORMONE DATABASE; ARTICLE; BIOINFORMATICS; DATA BASE; GENE; GENE EXPRESSION; GENE INTERACTION; HORMONAL REGULATION; HORMONE SYNTHESIS; NONHUMAN; NUCLEOTIDE SEQUENCE; ONLINE ANALYSIS; ORTHOLOGY; PLANT RESPONSE; PRIORITY JOURNAL; PROTEIN DATABASE; PUBLICATION; RNA SPLICING; SIGNAL TRANSDUCTION; SYSTEMATIC REVIEW (TOPIC);

ARABIDOPSIS; DATABASES, GENETIC; GENES, PLANT; MICRORNAS; PLANT GROWTH REGULATORS; RNA SPLICING;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 78651270438     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq1066     Document Type: Article

References (23)

1. Wolters,H. and Jurgens,G. (2009) Survival of the flexible: Hormonal growth control and adaptation in plant development. Nat. Rev. Genet., 10, 305-317.
2. Peng,Z.Y., Zhou,X., Li,L., Yu,X., Li,H., Jiang,Z., Cao,G., Bai,M., Wang,X., Jiang,C. et al. (2009) Arabidopsis Hormone Database: A comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis. Nucleic Acids Res., 37, D975-D982.
3. Qiao,H., Chang,K.N., Yazaki,J. and Ecker,J.R. (2009) Interplay between ethylene, ETP1/ETP2 F-box proteins, and degradation of EIN2 triggers ethylene responses in Arabidopsis. Genes Dev., 23, 512-521.
4. Miyazono,K., Miyakawa,T., Sawano,Y., Kubota,K., Kang,H.J., Asano,A., Miyauchi,Y., Takahashi,M., Zhi,Y., Fujita,Y. et al. (2009) Structural basis of abscisic acid signalling. Nature, 462, 609-614.
5. Gutierrez,R.A., Shasha,D.E. and Coruzzi,G.M. (2005) Systems biology for the virtual plant. Plant Physiol., 138, 550-554.
6. Goda,H., Sasaki,E., Akiyama,K., Maruyama-Nakashita,A., Nakabayashi,K., Li,W., Ogawa,M., Yamauchi,Y., Preston,J., Aoki,K. et al. (2008) The AtGenExpress hormone and chemical treatment data set: Experimental design, data evaluation, model data analysis and data access. Plant J., 55, 526-542.
7. Kilian,J., Whitehead,D., Horak,J., Wanke,D., Weinl,S., Batistic,O., D'Angelo,C., Bornberg-Bauer,E., Kudla,J. and Harter,K. (2007) The AtGenExpress global stress expression data set: Protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J., 50, 347-363.
8. Schmid,M., Davison,T.S., Henz,S.R., Pape,U.J., Demar,M., Vingron,M., Scholkopf,B., Weigel,D. and Lohmann,J.U. (2005) A gene expression map of Arabidopsis thaliana development. Nat. Genet., 37, 501-506.
9. Lister,R., O'Malley,R.C., Tonti-Filippini,J., Gregory,B.D., Berry,C.C., Millar,A.H. and Ecker,J.R. (2008) Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell, 133, 523-536.
10. Zhang,X., Yazaki,J., Sundaresan,A., Cokus,S., Chan,S.W., Chen,H., Henderson,I.R., Shinn,P., Pellegrini,M., Jacobsen,S.E. et al. (2006) Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell, 126, 1189-1201.
11. Khandelwal,A., Cho,S.H., Marella,H., Sakata,Y., Perroud,P.F., Pan,A. and Quatrano,R.S. (2010) Role of ABA and ABI3 in desiccation tolerance. Science, 327, 546.
12. Liu,J., Mehdi,S., Topping,J., Tarkowski,P. and Lindsey,K. (2010) Modelling and experimental analysis of hormonal crosstalk in Arabidopsis. Mol. Syst. Biol., 6, 373.
13. Chen,F., Mackey,A.J., Stoeckert,C.J. Jr and Roos,D.S. (2006) OrthoMCL-DB: Querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Res., 34, D363-D368.
14. Pandey,S., Nelson,D.C. and Assmann,S.M. (2009) Two novel GPCR-type G proteins are abscisic acid receptors in Arabidopsis. Cell, 136, 136-148.
15. Alves,L. Jr, Niemeier,S., Hauenschild,A., Rehmsmeier,M. and Merkle,T. (2009) Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Res., 37, 4010-4021.
16. Liu,X., Wu,J., Wang,J., Zhao,S., Li,Z., Kong,L., Gu,X., Luo,J. and Gao,G. (2009) WebLab: A data-centric, knowledge-sharing bioinformatic platform. Nucleic Acids Res., 37, W33-W39.
17. Jiang,Z. and Guo,H. (2010) A comparative genomic analysis of plant hormone related genes in different species. J. Genet. Genomics, 37, 219-230.
18. Olmedo,G., Guo,H., Gregory,B.D., Nourizadeh,S.D., Aguilar- Henonin,L., Li,H., An,F., Guzman,P. and Ecker,J.R. (2006) ETHYLENE-INSENSITIVE5 encodes a 50!30 exoribonuclease required for regulation of the EIN3-targeting F-box proteins EBF1/2. Proc. Natl Acad. Sci. USA, 103, 13286-13293.
19. Potuschak,T., Vansiri,A., Binder,B.M., Lechner,E., Vierstra,R.D. and Genschik,P. (2006) The Exoribonuclease XRN4 Is a Component of the Ethylene Response Pathway in Arabidopsis. Plant Cell, 18, 3047-3057.
20. Gregory,B.D., O'Malley,R.C., Lister,R., Urich,M.A., Tonti- Filippini,J., Chen,H., Millar,A.H. and Ecker,J.R. (2008) A Link between RNA Metabolism and Silencing Affecting Arabidopsis Development. Dev. Cell, 14, 854-866.
21. Davidson,E.H., Rast,J.P., Oliveri,P., Ransick,A., Calestani,C., Yuh,C.H., Minokawa,T., Amore,G., Hinman,V., Arenas-Mena,C. et al. (2002) A genomic regulatory network for development. Science, 295, 1669-1678.
22. Price,N.D. and Shmulevich,I. (2007) Biochemical and statistical network models for systems biology. Curr. Opin. Biotechnol., 18, 365-370.
23. Suzuki,M. and McCarty,D.R. (2008) Functional symmetry of the B3 network controlling seed development. Curr. Opin. Plant Biol., 11, 548-553.