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Volumn 110, Issue 2, 2011, Pages 587-596

Microbial community composition and dynamics in a semi-industrial-scale facility operating under the MixAlco™ bioconversion platform

Author keywords

Carboxylate platform; Lignocellulosic biofuels; MixAlco process; Mixed microbial communities; Tag pyrosequencing; Time series

Indexed keywords

BIOCONVERSION; CARBOXYLATION; DYNAMICS; FERMENTATION; MICROORGANISMS; POLYMERASE CHAIN REACTION; RNA;

EID: 78651097267     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2010.04919.x     Document Type: Article
Times cited : (16)

References (46)
  • 1
    • 74649086328 scopus 로고    scopus 로고
    • Biomass energy and the environmental impacts associated with its production and utilization
    • Abbasi, T. and Abbasi, S.A. (2010) Biomass energy and the environmental impacts associated with its production and utilization. Renew Sust Energ Rev 14, 919-937.
    • (2010) Renew Sust Energ Rev , vol.14 , pp. 919-937
    • Abbasi, T.1    Abbasi, S.A.2
  • 2
    • 53449086190 scopus 로고    scopus 로고
    • Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use
    • Acosta-Martínez, V., Dowd, S., Sun, Y. and Allen, V. (2008) Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use. Soil Biol Biochem 40, 2762-2770.
    • (2008) Soil Biol Biochem , vol.40 , pp. 2762-2770
    • Acosta-Martínez, V.1    Dowd, S.2    Sun, Y.3    Allen, V.4
  • 3
    • 24644494789 scopus 로고    scopus 로고
    • Conversion of municipal solid waste to carboxylic acids using a mixed culture of mesophilic microorganisms
    • Aiello-Mazzarri, C., Agbogbo, F.K. and Holtzapple, M.T. (2006) Conversion of municipal solid waste to carboxylic acids using a mixed culture of mesophilic microorganisms. Bioresour Technol 97, 47-56.
    • (2006) Bioresour Technol , vol.97 , pp. 47-56
    • Aiello-Mazzarri, C.1    Agbogbo, F.K.2    Holtzapple, M.T.3
  • 4
    • 0037445309 scopus 로고    scopus 로고
    • Phylogeny of numerically abundant culturable anaerobic bacteria associated with degradation of rice plant residue in Japanese paddy field soil
    • Akasaka, H., Izawa, T., Ueki, K. and Ueki, A. (2003) Phylogeny of numerically abundant culturable anaerobic bacteria associated with degradation of rice plant residue in Japanese paddy field soil. FEMS Microbiol Ecol 43, 149-161.
    • (2003) FEMS Microbiol Ecol , vol.43 , pp. 149-161
    • Akasaka, H.1    Izawa, T.2    Ueki, K.3    Ueki, A.4
  • 5
    • 0043113323 scopus 로고    scopus 로고
    • Phenotypic diversity among ruminal isolates of Prevotella ruminicola: proposal of Prevotella brevis sp. nov., Prevotella bryantii sp. nov., and Prevotella albensis sp. nov. and redefinition of Prevotella ruminicola
    • Avguštin, G., Wallace, R.J. and Flint, H.J. (1997) Phenotypic diversity among ruminal isolates of Prevotella ruminicola: proposal of Prevotella brevis sp. nov., Prevotella bryantii sp. nov., and Prevotella albensis sp. nov. and redefinition of Prevotella ruminicola. Int J Syst Bacteriol 47, 284-288.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 284-288
    • Avguštin, G.1    Wallace, R.J.2    Flint, H.J.3
  • 6
    • 77955848374 scopus 로고    scopus 로고
    • Bioenergy
    • In, ed. Wall, J.D., Harwood, C.S. and, Demain, A., Washington, DC: ASM Press.
    • Bàez-Vàsquez, M.A. and Demain, A.L. (2008) Ethanol, biomass, and Clostridia. In Bioenergy ed. Wall, J.D., Harwood, C.S. and Demain, A. pp. 49-54 Washington, DC: ASM Press.
    • (2008) Ethanol, biomass, and Clostridia , pp. 49-54
    • Bàez-Vàsquez, M.A.1    Demain, A.L.2
  • 7
    • 17044446463 scopus 로고    scopus 로고
    • Fermentation of xylose into acetic acid by Clostridium thermoaceticum
    • Balasubramanian, N., Kim, J.S. and Lee, Y.Y. (2001) Fermentation of xylose into acetic acid by Clostridium thermoaceticum. Appl Biochem Biotechnol 91-3, 367-376.
    • (2001) Appl Biochem Biotechnol , vol.3-91 , pp. 367-376
    • Balasubramanian, N.1    Kim, J.S.2    Lee, Y.Y.3
  • 8
    • 16544365966 scopus 로고    scopus 로고
    • Identification, detection, and spatial resolution of Clostridium populations responsible for cellulose degradation in a methanogenic landfill leachate bioreactor
    • Burrell, P.C., O'Sullivan, C., Song, H., Clarke, W.P. and Blackall, L.L. (2004) Identification, detection, and spatial resolution of Clostridium populations responsible for cellulose degradation in a methanogenic landfill leachate bioreactor. Appl Environ Microbiol 70, 2414-2419.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 2414-2419
    • Burrell, P.C.1    O'Sullivan, C.2    Song, H.3    Clarke, W.P.4    Blackall, L.L.5
  • 9
    • 47249142417 scopus 로고    scopus 로고
    • Bacteroides xylanisolvens sp. nov., a xylan-degrading bacterium isolated from human faeces
    • Chassard, C., Delmas, E., Lawson, P.A. and Bernalier-Donadille, A. (2008) Bacteroides xylanisolvens sp. nov., a xylan-degrading bacterium isolated from human faeces. Int J Syst Evol Microbiol 58, 1008-1013.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 1008-1013
    • Chassard, C.1    Delmas, E.2    Lawson, P.A.3    Bernalier-Donadille, A.4
  • 10
    • 0001910273 scopus 로고    scopus 로고
    • Microbiology of Solid Wastes
    • In, ed. Palmisano, A.C. and, Barlaz, M.A. Boca Raton, FL: CRC Press.
    • Chynoweth, D.P. and Pullammanappallil, P. (1996) Anaerobic digestion of municipal solid wastes. In Microbiology of Solid Wastes ed. Palmisano, A.C. and Barlaz, M.A. pp. 74-114 Boca Raton, FL: CRC Press.
    • (1996) Anaerobic digestion of municipal solid wastes , pp. 74-114
    • Chynoweth, D.P.1    Pullammanappallil, P.2
  • 13
    • 0027137131 scopus 로고
    • Phascolarcto-bacterium faecium gen. nov., spec. nov., a novel taxon of the Sporomusa group of Bacteria
    • Deldot, T., Osawa, R. and Stackebrandt, E. (1993) Phascolarcto-bacterium faecium gen. nov., spec. nov., a novel taxon of the Sporomusa group of Bacteria. Syst Appl Microbiol 16, 380-384.
    • (1993) Syst Appl Microbiol , vol.16 , pp. 380-384
    • Deldot, T.1    Osawa, R.2    Stackebrandt, E.3
  • 15
    • 49549107771 scopus 로고    scopus 로고
    • Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)
    • Dowd, S.E., Callaway, T.R., Wolcott, R.D., Sun, Y., McKeehan, T., Hagevoort, R.G. and Edrington, T.S. (2008) Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP). BMC Microbiol 8, 125.
    • (2008) BMC Microbiol , vol.8 , pp. 125
    • Dowd, S.E.1    Callaway, T.R.2    Wolcott, R.D.3    Sun, Y.4    McKeehan, T.5    Hagevoort, R.G.6    Edrington, T.S.7
  • 16
    • 0003437299 scopus 로고    scopus 로고
    • PHYLIP (Phylogeny Inference Package) version 3.6
    • Seattle, WA: Distributed by author. Department of Genome Sciences, University of Washington.
    • Felsenstein, J. (2005) PHYLIP (Phylogeny Inference Package) version 3.6. Seattle, WA: Distributed by author. Department of Genome Sciences, University of Washington.
    • (2005)
    • Felsenstein, J.1
  • 17
    • 22144470189 scopus 로고    scopus 로고
    • Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays
    • Fierer, N., Jackson, J.A., Vilgalys, R. and Jackson, R.B. (2005) Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays. Appl Environ Microbiol 71, 4117-4120.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4117-4120
    • Fierer, N.1    Jackson, J.A.2    Vilgalys, R.3    Jackson, R.B.4
  • 18
    • 64749090232 scopus 로고    scopus 로고
    • Effect of biowaste sludge maturation on the diversity of thermophilic Bacteria and Archaea in an anaerobic reactor
    • Goberna, M., Insam, H. and Franke-Whittle, I.H. (2009) Effect of biowaste sludge maturation on the diversity of thermophilic Bacteria and Archaea in an anaerobic reactor. Appl Environ Microbiol 75, 2566-2572.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2566-2572
    • Goberna, M.1    Insam, H.2    Franke-Whittle, I.H.3
  • 20
    • 0030002866 scopus 로고    scopus 로고
    • Isolation and characterization of Sporobacter termitidis gen nov sp nov, from the digestive tract of the wood-feeding termite Nasutitermes lujae
    • Grech-Mora, I., Fardeau, M.L., Patel, B.K.C., Ollivier, B., Rimbault, A., Prensier, G., Garcia, J.L. and Garnier-Sillam, E. (1996) Isolation and characterization of Sporobacter termitidis gen nov sp nov, from the digestive tract of the wood-feeding termite Nasutitermes lujae. Int J Syst Bacteriol 46, 512-518.
    • (1996) Int J Syst Bacteriol , vol.46 , pp. 512-518
    • Grech-Mora, I.1    Fardeau, M.L.2    Patel, B.K.C.3    Ollivier, B.4    Rimbault, A.5    Prensier, G.6    Garcia, J.L.7    Garnier-Sillam, E.8
  • 21
    • 0026060668 scopus 로고
    • Cellobiose uptake and metabolism by Ruminococcus flavefaciens
    • Helaszek, C.T. and White, B.A. (1991) Cellobiose uptake and metabolism by Ruminococcus flavefaciens. Appl Environ Microbiol 57, 64-68.
    • (1991) Appl Environ Microbiol , vol.57 , pp. 64-68
    • Helaszek, C.T.1    White, B.A.2
  • 22
    • 77952672526 scopus 로고    scopus 로고
    • Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments
    • Hollister, E.B., Engledow, A.S., Hammett, A.M., Provin, T.L., Wilkinson, H.H. and Gentry, T.J. (2010a) Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments. ISME J 4, 829-838.
    • (2010) ISME J , vol.4 , pp. 829-838
    • Hollister, E.B.1    Engledow, A.S.2    Hammett, A.M.3    Provin, T.L.4    Wilkinson, H.H.5    Gentry, T.J.6
  • 25
    • 0023137143 scopus 로고
    • Methanogens and the diversity of archaebacteria
    • Jones, W.J., Nagle, D.P. and Whitman, W.B. (1987) Methanogens and the diversity of archaebacteria. Microbiol Rev 51, 135-177.
    • (1987) Microbiol Rev , vol.51 , pp. 135-177
    • Jones, W.J.1    Nagle, D.P.2    Whitman, W.B.3
  • 26
    • 23844548623 scopus 로고    scopus 로고
    • Lime pretreatment and enzymatic hydrolysis of corn stover
    • Kim, S. and Holtzapple, M.T. (2005) Lime pretreatment and enzymatic hydrolysis of corn stover. Bioresour Technol 96, 1994-2006.
    • (2005) Bioresour Technol , vol.96 , pp. 1994-2006
    • Kim, S.1    Holtzapple, M.T.2
  • 27
    • 33846879171 scopus 로고    scopus 로고
    • Microbial community analysis of a biogas-producing completely stirred tank reactor fed continuously with fodder beet silage as mono-substrate
    • Klocke, M., Mähnert, P., Mundt, K., Souidi, K. and Linke, B. (2007) Microbial community analysis of a biogas-producing completely stirred tank reactor fed continuously with fodder beet silage as mono-substrate. Syst Appl Microbiol 30, 139-151.
    • (2007) Syst Appl Microbiol , vol.30 , pp. 139-151
    • Klocke, M.1    Mähnert, P.2    Mundt, K.3    Souidi, K.4    Linke, B.5
  • 28
    • 67349232764 scopus 로고    scopus 로고
    • Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing
    • Kröber, M., Bekel, T., Diaz, N.N., Goesmann, A., Jaenicke, S., Krause, L., Miller, D., Runte, K.J. et al. (2009) Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. J Biotechnol 142, 38-49.
    • (2009) J Biotechnol , vol.142 , pp. 38-49
    • Kröber, M.1    Bekel, T.2    Diaz, N.N.3    Goesmann, A.4    Jaenicke, S.5    Krause, L.6    Miller, D.7    Runte, K.J.8
  • 29
    • 0001857117 scopus 로고
    • Nucelic Acid Techniques in Bacterial Systematics
    • In, ed. Stackenbrandt, E. and, Goodfellow, M.,Chichester, UK: John Wiley & Sons.
    • Lane, D.J. (1991) S/23S rRNA sequencing. In Nucelic Acid Techniques in Bacterial Systematics ed. Stackenbrandt, E. and Goodfellow, M. pp. 115-157 Chichester, UK: John Wiley & Sons.
    • (1991) S/23S rRNA sequencing , pp. 115-157
    • Lane, D.J.1
  • 30
    • 33847732738 scopus 로고    scopus 로고
    • Effect of process temperature on bacterial and archaeal communities in two methanogenic bioreactors treating organic household waste
    • Levén, L., Eriksson, A.R.B. and Schnürer, A. (2007) Effect of process temperature on bacterial and archaeal communities in two methanogenic bioreactors treating organic household waste. FEMS Microbiol Ecol 59, 683-693.
    • (2007) FEMS Microbiol Ecol , vol.59 , pp. 683-693
    • Levén, L.1    Eriksson, A.R.B.2    Schnürer, A.3
  • 31
    • 0001418414 scopus 로고
    • Corn steep liquor in microbiology
    • Liggett, R.W. and Koffler, H. (1948) Corn steep liquor in microbiology. Bacteriol Rev 12, 297-311.
    • (1948) Bacteriol Rev , vol.12 , pp. 297-311
    • Liggett, R.W.1    Koffler, H.2
  • 32
    • 34948891032 scopus 로고    scopus 로고
    • The spatial distribution of eubacteria and archaea in sand-clay columns degrading carbon tetrachloride and methanol
    • Lima, G.d.P. and Sleep, B.E. (2007) The spatial distribution of eubacteria and archaea in sand-clay columns degrading carbon tetrachloride and methanol. J Contam Hydrol 94, 34-48.
    • (2007) J Contam Hydrol , vol.94 , pp. 34-48
    • Lima, G.1    Sleep, B.E.2
  • 33
    • 31344479544 scopus 로고    scopus 로고
    • Ethanol fermentation from biomass resources: current state and prospects
    • Lin, Y. and Tanaka, S. (2006) Ethanol fermentation from biomass resources: current state and prospects. Appl Microbiol Biotechnol 69, 627-642.
    • (2006) Appl Microbiol Biotechnol , vol.69 , pp. 627-642
    • Lin, Y.1    Tanaka, S.2
  • 34
    • 1942453481 scopus 로고    scopus 로고
    • Measuring Biological Diversity
    • Maldan, MA: Blackwell Publishing.
    • Magurran, A.E. (2004) Measuring Biological Diversity. Maldan, MA: Blackwell Publishing.
    • (2004)
    • Magurran, A.E.1
  • 35
    • 58949087140 scopus 로고    scopus 로고
    • Dialister succinatiphilus sp. nov. and Barnesiella intestinihominis sp. nov., isolated from human faeces
    • Morotomi, M., Nagai, F., Sakon, H. and Tanaka, R. (2008) Dialister succinatiphilus sp. nov. and Barnesiella intestinihominis sp. nov., isolated from human faeces. Int J Syst Evol Microbiol 58, 2716-2720.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 2716-2720
    • Morotomi, M.1    Nagai, F.2    Sakon, H.3    Tanaka, R.4
  • 36
    • 64849106871 scopus 로고    scopus 로고
    • Brewer's spent grain and corn steep liquor as substrates for cellulolytic enzymes production by Streptomyces malaysiensis
    • Nascimento, R.P., Junior, N.A., Pereira, N. Jr, Bon, E.P.S. and Coelho, R.R.R. (2009) Brewer's spent grain and corn steep liquor as substrates for cellulolytic enzymes production by Streptomyces malaysiensis. Lett Appl Microbiol 48, 529-535.
    • (2009) Lett Appl Microbiol , vol.48 , pp. 529-535
    • Nascimento, R.P.1    Junior, N.A.2    Pereira Jr, N.3    Bon, E.P.S.4    Coelho, R.R.R.5
  • 37
    • 0036532315 scopus 로고    scopus 로고
    • Can imperfections help to improve bioreactor performance?
    • Patnaik, P.R. (2002) Can imperfections help to improve bioreactor performance? Trends Biotechnol 20, 135-137.
    • (2002) Trends Biotechnol , vol.20 , pp. 135-137
    • Patnaik, P.R.1
  • 38
    • 29144475803 scopus 로고    scopus 로고
    • Biomass as Feedstock for a Bioenergy and Bioproducts Industry: The Technical Feasibility of a Billion-ton Annual Supply
    • In DOE/GO-102005-2135. Oak Ridge, TN, Oak Ridge National Laboratory.
    • Perlack, R.D., Wright, L.L., Turhollow, A.F., Graham, R.L., Stokes, B.J. and Erbach, D.C. (2005) Biomass as Feedstock for a Bioenergy and Bioproducts Industry: The Technical Feasibility of a Billion-ton Annual Supply. In DOE/GO-102005-2135. Oak Ridge, TN: Oak Ridge National Laboratory.
    • (2005)
    • Perlack, R.D.1    Wright, L.L.2    Turhollow, A.F.3    Graham, R.L.4    Stokes, B.J.5    Erbach, D.C.6
  • 39
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl, M.W. (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29, 2002-2007.
    • (2001) Nucleic Acids Res , vol.29 , pp. 2002-2007
    • Pfaffl, M.W.1
  • 40
    • 34247850939 scopus 로고    scopus 로고
    • Microbial community structure of ethanol type fermentation in bio-hydrogen production
    • Ren, N., Xing, D., Rittmann, B.E., Zhao, L., Xie, T. and Zhao, X. (2007) Microbial community structure of ethanol type fermentation in bio-hydrogen production. Environ Microbiol 9, 1112-1125.
    • (2007) Environ Microbiol , vol.9 , pp. 1112-1125
    • Ren, N.1    Xing, D.2    Rittmann, B.E.3    Zhao, L.4    Xie, T.5    Zhao, X.6
  • 41
    • 49649106060 scopus 로고    scopus 로고
    • Genomics of cellulosic biofuels
    • Rubin, E.M. (2008) Genomics of cellulosic biofuels. Nature 454, 841-845.
    • (2008) Nature , vol.454 , pp. 841-845
    • Rubin, E.M.1
  • 42
  • 43
    • 42149172662 scopus 로고    scopus 로고
    • A review of recent literature to search for an efficient catalytic process for the conversion of syngas to ethanol
    • Subramani, V. and Gangwal, S.K. (2008) A review of recent literature to search for an efficient catalytic process for the conversion of syngas to ethanol. Energ Fuel 22, 814-839.
    • (2008) Energ Fuel , vol.22 , pp. 814-839
    • Subramani, V.1    Gangwal, S.K.2
  • 44
    • 19244382317 scopus 로고    scopus 로고
    • Conversion of sugarcane bagasse to carboxylic acids using a mixed culture of mesophilic microorganisms
    • Thanakoses, P., Mostafa, N.A.A. and Holtzapple, M.T. (2003) Conversion of sugarcane bagasse to carboxylic acids using a mixed culture of mesophilic microorganisms. Appl Biochem Biotechnol 105, 523-546.
    • (2003) Appl Biochem Biotechnol , vol.105 , pp. 523-546
    • Thanakoses, P.1    Mostafa, N.A.A.2    Holtzapple, M.T.3
  • 45
    • 1842780112 scopus 로고    scopus 로고
    • Influence of bed materials on methanogenic characteristics and immobilized microbes in anaerobic digester
    • Yang, Y., Tada, C., Miah, M.S., Tsukahara, K., Yagishita, T. and Sawayama, S. (2004) Influence of bed materials on methanogenic characteristics and immobilized microbes in anaerobic digester. Mater Sci Eng 24, 413-419.
    • (2004) Mater Sci Eng , vol.24 , pp. 413-419
    • Yang, Y.1    Tada, C.2    Miah, M.S.3    Tsukahara, K.4    Yagishita, T.5    Sawayama, S.6
  • 46
    • 27744480824 scopus 로고    scopus 로고
    • A similarity measure based on species proportions
    • Yue, J.C. and Clayton, M.K. (2005) A similarity measure based on species proportions. Commun Stat Theory Methods 34, 2123-2131.
    • (2005) Commun Stat Theory Methods , vol.34 , pp. 2123-2131
    • Yue, J.C.1    Clayton, M.K.2


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