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Volumn 49, Issue 1, 2011, Pages 77-85

Phylogeography of Mus (Nannomys) minutoides (Rodentia, Muridae) in West Central African savannahs: Singular vicariance in neighbouring populations

Author keywords

Cytochrome b; Forest; Late Pleistocene; Mus minutoides; Nested clade analysis; Phylogeography; Savannah; Vicariance; West Central Africa

Indexed keywords

BAYESIAN ANALYSIS; CYTOCHROME; ISOLATED POPULATION; MAXIMUM LIKELIHOOD ANALYSIS; NESTEDNESS; PHYLOGEOGRAPHY; PLEISTOCENE; RAINFOREST; RODENT; SAVANNA; VICARIANCE;

EID: 78650936658     PISSN: 09475745     EISSN: 14390469     Source Type: Journal    
DOI: 10.1111/j.1439-0469.2010.00579.x     Document Type: Article
Times cited : (18)

References (56)
  • 1
    • 0031608499 scopus 로고    scopus 로고
    • Chromosome arrangements and cytogenetic differentiation of two species of African mice of the genus Mus (Rodentia, Muridae)
    • Aniskin VM, Lavrenchenko LA, Varshavskii AA, Milishnikov AN (1998) Chromosome arrangements and cytogenetic differentiation of two species of African mice of the genus Mus (Rodentia, Muridae). Genetica 34:93-99.
    • (1998) Genetica , vol.34 , pp. 93-99
    • Aniskin, V.M.1    Lavrenchenko, L.A.2    Varshavskii, A.A.3    Milishnikov, A.N.4
  • 3
    • 0003574887 scopus 로고    scopus 로고
    • Phylogeography: The History and Formation of Species
    • Harvard University Press, Cambridge, Massachusetts.
    • Avise JC (2000) Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, Massachusetts.
    • (2000)
    • Avise, J.C.1
  • 4
    • 33845883023 scopus 로고    scopus 로고
    • Paleontological evidence to date the tree of life
    • Benton MJ, Donoghue PC (2007) Paleontological evidence to date the tree of life. Mol Biol Evol 24:26-53.
    • (2007) Mol Biol Evol , vol.24 , pp. 26-53
    • Benton, M.J.1    Donoghue, P.C.2
  • 5
    • 15944403214 scopus 로고    scopus 로고
    • Molecular phylogeny of the genus Mus (Rodentia: Murinae) based on mitochondrial and nuclear data
    • Chevret P, Veyrunes F, Bitton-Davidian J (2005) Molecular phylogeny of the genus Mus (Rodentia: Murinae) based on mitochondrial and nuclear data. Biol J Linn Soc, 84:417-427.
    • (2005) Biol J Linn Soc , vol.84 , pp. 417-427
    • Chevret, P.1    Veyrunes, F.2    Bitton-Davidian, J.3
  • 6
    • 0033771358 scopus 로고    scopus 로고
    • TCS: a computer program to estimate gene genealogies
    • Clement M, Posada D, Crandall K (2000) TCS: a computer program to estimate gene genealogies. Mol Ecol 9:1657-1660.
    • (2000) Mol Ecol , vol.9 , pp. 1657-1660
    • Clement, M.1    Posada, D.2    Crandall, K.3
  • 7
    • 78650960046 scopus 로고    scopus 로고
    • The Guenons: Diversity and Adaptation in African Monkeys
    • In: Glenn M, Cords M (eds), Kluwer Academic/Plenum Publishers, New York
    • Colyn M, Deleporte P (2002) Biogeographic Analysis of Central African Forest Guenons. In: Glenn M, Cords M (eds), The Guenons: Diversity and Adaptation in African Monkeys. Kluwer Academic/Plenum Publishers, New York, pp 61-78.
    • (2002) Biogeographic Analysis of Central African Forest Guenons , pp. 61-78
    • Colyn, M.1    Deleporte, P.2
  • 8
    • 0026305664 scopus 로고
    • A re-appraisal of palaeoenvironmental history in Central Africa: evidence for a major fluvial refuge in the Zaïre Basin
    • Colyn M, Gautier-Hion A, Verheyen W (1991) A re-appraisal of palaeoenvironmental history in Central Africa: evidence for a major fluvial refuge in the Zaïre Basin. J Biogeogr 18:403-407.
    • (1991) J Biogeogr , vol.18 , pp. 403-407
    • Colyn, M.1    Gautier-Hion, A.2    Verheyen, W.3
  • 9
    • 78650950955 scopus 로고    scopus 로고
    • Différenciation morphologique et moléculaire des Elephantinae (Mammalia, Proboscidea): Statut systématique de l'éléphant d'Afrique de forêt, Loxodonta africana cyclotis (Matschie, 1900). Unpublished Ph.D. dissertation, Museum National d'Histoire Naturelle, Paris, France
    • Debruyne R (2003) Différenciation morphologique et moléculaire des Elephantinae (Mammalia, Proboscidea): Statut systématique de l'éléphant d'Afrique de forêt, Loxodonta africana cyclotis (Matschie, 1900). Unpublished Ph.D. dissertation, Museum National d'Histoire Naturelle, Paris, France. 432 pp.
    • (2003) , pp. 432
    • Debruyne, R.1
  • 10
    • 38649110663 scopus 로고    scopus 로고
    • Beast: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A (2007) Beast: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol, 7:214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 11
    • 17744381574 scopus 로고    scopus 로고
    • Bayesian coalescent inference of past population dynamics from molecular sequences
    • Drummond AJ, Rambaut A, Shapiro B, Pybus OG (2005) Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol 22:1185-1192.
    • (2005) Mol Biol Evol , vol.22 , pp. 1185-1192
    • Drummond, A.J.1    Rambaut, A.2    Shapiro, B.3    Pybus, O.G.4
  • 12
    • 0033972680 scopus 로고    scopus 로고
    • Vegetation change in equatorial West Africa: time-slices for the last 150 ka
    • Dupont ML, Jahns S, Marret F, Ning S (2000) Vegetation change in equatorial West Africa: time-slices for the last 150 ka. Palaeoclimatol Palaeoecol 155:95-122.
    • (2000) Palaeoclimatol Palaeoecol , vol.155 , pp. 95-122
    • Dupont, M.L.1    Jahns, S.2    Marret, F.3    Ning, S.4
  • 14
    • 0026460354 scopus 로고
    • Changements climatiques et action anthropique sur le littoral congolais au cours de l'Holocène
    • Elenga H, Schwartz D, Vincens A (1992) Changements climatiques et action anthropique sur le littoral congolais au cours de l'Holocène. Bull Soc Géol France 163:83-90.
    • (1992) Bull Soc Géol France , vol.163 , pp. 83-90
    • Elenga, H.1    Schwartz, D.2    Vincens, A.3
  • 15
    • 78650949896 scopus 로고    scopus 로고
    • Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1.
    • Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1.
    • (2005)
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 16
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
    • Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147:915-925.
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.X.1
  • 17
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu YX, Li WH (1993) Statistical tests of neutrality of mutations. Genetics, 133:693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 18
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol, 52:696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 19
    • 23144433822 scopus 로고    scopus 로고
    • PHYML Online- a web server for fast maximum likelihood-based phylogenetic inference
    • Guindon S, Lethiec F, Duroux P, Gascuel O (2005) PHYML Online- a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res, 33:W557-W559.
    • (2005) Nucleic Acids Res , vol.33
    • Guindon, S.1    Lethiec, F.2    Duroux, P.3    Gascuel, O.4
  • 20
    • 0028682532 scopus 로고    scopus 로고
    • Mammals of the Guinea-Congo rain forest
    • Happold DCD (1996) Mammals of the Guinea-Congo rain forest. Proc R Soc Edinb 104:243-284.
    • (1996) Proc R Soc Edinb , vol.104 , pp. 243-284
    • Happold, D.C.D.1
  • 21
    • 20444427160 scopus 로고    scopus 로고
    • Time dependency of molecular rate estimates and systematic overestimation of recent divergence times
    • Ho SYW, Phillips MJ, Cooper A, Drummond AJ (2005) Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Mol Biol Evol 2:1561-1568.
    • (2005) Mol Biol Evol , vol.2 , pp. 1561-1568
    • Ho, S.Y.W.1    Phillips, M.J.2    Cooper, A.3    Drummond, A.J.4
  • 22
    • 0001935493 scopus 로고
    • Oxford Surveys in Evolutionary Biology
    • In: Futuyma D, Antonovics J (eds), Oxford University Press, New York
    • Hudson RR (1990) Gene genealogies and the coalescent process. In: Futuyma D, Antonovics J (eds) Oxford Surveys in Evolutionary Biology, Vol. 7: Oxford University Press, New York, pp 1-44.
    • (1990) Gene genealogies and the coalescent process , vol.7 , pp. 1-44
    • Hudson, R.R.1
  • 23
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 24
    • 33644601043 scopus 로고    scopus 로고
    • The pattern and timing of diversification of Philippine endemic rodents: evidence from mitochondrial and nuclear gene sequences
    • Jansa SA, Barker FK, Heaney LR (2006) The pattern and timing of diversification of Philippine endemic rodents: evidence from mitochondrial and nuclear gene sequences. Syst Biol 55:73-88.
    • (2006) Syst Biol , vol.55 , pp. 73-88
    • Jansa, S.A.1    Barker, F.K.2    Heaney, L.R.3
  • 26
    • 0036900040 scopus 로고    scopus 로고
    • Statistical phylogeography
    • Knowles LL, Maddison WP (2002) Statistical phylogeography. Mol Ecol 11:2623-2635.
    • (2002) Mol Ecol , vol.11 , pp. 2623-2635
    • Knowles, L.L.1    Maddison, W.P.2
  • 29
    • 0035013693 scopus 로고    scopus 로고
    • Multivariate analysis of morphometric variation in Asian Mus and sub-Saharan Nannomys (Rodentia: Muridae)
    • Macholán M (2001) Multivariate analysis of morphometric variation in Asian Mus and sub-Saharan Nannomys (Rodentia: Muridae). Zool Anz 240:7-14.
    • (2001) Zool Anz , vol.240 , pp. 7-14
    • Macholán, M.1
  • 31
    • 33749275048 scopus 로고    scopus 로고
    • The African rain forest - main characteristics of changes in vegetation and climate from the Upper Cretaceous to the Quaternary
    • Maley J (1996) The African rain forest - main characteristics of changes in vegetation and climate from the Upper Cretaceous to the Quaternary. Proc R Soc Edinb 104B:31-73.
    • (1996) Proc R Soc Edinb , vol.104 B , pp. 31-73
    • Maley, J.1
  • 32
    • 18244414763 scopus 로고    scopus 로고
    • La destruction catastrophique des forêts d'Afrique Centrale survenue il y a environ 2500 ans exerce encore une influence majeure sur la répartition actuelle des formations végétales
    • Maley J (2001) La destruction catastrophique des forêts d'Afrique Centrale survenue il y a environ 2500 ans exerce encore une influence majeure sur la répartition actuelle des formations végétales. Syst Geogr Plants 71:777-796.
    • (2001) Syst Geogr Plants , vol.71 , pp. 777-796
    • Maley, J.1
  • 33
    • 0002965894 scopus 로고
    • The Mouse in Biomedical Research
    • In: Foster HL, Small JD, Fox JG (eds), Academic Press, New York
    • Marshall JT (1981) Taxonomy. In: Foster HL, Small JD, Fox JG (eds), The Mouse in Biomedical Research. Academic Press, New York, pp 17-26.
    • (1981) Taxonomy , pp. 17-26
    • Marshall, J.T.1
  • 35
    • 11144345088 scopus 로고    scopus 로고
    • So close and so different: comparative phylogeography of two small mammal species, the yellow-necked fieldmouse (Apodemus flavicollis) and the woodmouse (Apodemus sylvaticus) in the Western Palearctic region
    • Michaux JR, Libois R, Filippucci MG (2005) So close and so different: comparative phylogeography of two small mammal species, the yellow-necked fieldmouse (Apodemus flavicollis) and the woodmouse (Apodemus sylvaticus) in the Western Palearctic region. Heredity 94:52-63.
    • (2005) Heredity , vol.94 , pp. 52-63
    • Michaux, J.R.1    Libois, R.2    Filippucci, M.G.3
  • 36
    • 30344481292 scopus 로고    scopus 로고
    • Mammal Species of the World: A Taxonomic and Geographic Reference
    • In: Wilson DE, Reeder DM (eds), 3rd edn. The Johns Hopkins University Press, Baltimore
    • Musser GG, Carleton MD (2005) Superfamily Muroidea. In: Wilson DE, Reeder DM (eds), Mammal Species of the World: A Taxonomic and Geographic Reference, 3rd edn. The Johns Hopkins University Press, Baltimore, pp 894-1531.
    • (2005) Superfamily Muroidea , pp. 894-1531
    • Musser, G.G.1    Carleton, M.D.2
  • 37
    • 34249797574 scopus 로고    scopus 로고
    • The automation and evaluation of nested clade phylogeography analysis
    • Panchal M, Beaumont MA (2007) The automation and evaluation of nested clade phylogeography analysis. The Society for the Study of Evolution 61(6):1466-1480.
    • (2007) The Society for the Study of Evolution , vol.61 , Issue.6 , pp. 1466-1480
    • Panchal, M.1    Beaumont, M.A.2
  • 38
    • 0036263279 scopus 로고    scopus 로고
    • Optimal ramdomization when testing the existence of phylogeography structure
    • Petit RJ, Grivet D (2002) Optimal ramdomization when testing the existence of phylogeography structure. Genetics 161:469-471.
    • (2002) Genetics , vol.161 , pp. 469-471
    • Petit, R.J.1    Grivet, D.2
  • 39
    • 3142761727 scopus 로고
    • Contribution à la connaissance des souris africaines
    • Petter F (1963) Contribution à la connaissance des souris africaines. Mammalia 27:602-607.
    • (1963) Mammalia , vol.27 , pp. 602-607
    • Petter, F.1
  • 40
    • 0013372563 scopus 로고
    • Les souris africaines du groupe sorella (Rongeurs, Muridés)
    • Petter F (1981) Les souris africaines du groupe sorella (Rongeurs, Muridés). Mammalia 45:313-320.
    • (1981) Mammalia , vol.45 , pp. 313-320
    • Petter, F.1
  • 41
    • 0023477536 scopus 로고
    • Plio-Pleistocene fossil mammalian microfauna of Southern Africa, A preliminary report including descriptions of two new fossil muroid genera (Mammalia, Rodentia)
    • Pocock TN (1987) Plio-Pleistocene fossil mammalian microfauna of Southern Africa, A preliminary report including descriptions of two new fossil muroid genera (Mammalia, Rodentia). Palaeontol Afr 26:69-91.
    • (1987) Palaeontol Afr , vol.26 , pp. 69-91
    • Pocock, T.N.1
  • 42
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 43
    • 0034100234 scopus 로고    scopus 로고
    • GeoDis: A program for the Cladistic Nested Analysis of the Geographical Distribution of Genetic Haplotypes
    • Posada D, Crandall KA, Templeton AR (2000) GeoDis: A program for the Cladistic Nested Analysis of the Geographical Distribution of Genetic Haplotypes. Mol Ecol 9:487-488.
    • (2000) Mol Ecol , vol.9 , pp. 487-488
    • Posada, D.1    Crandall, K.A.2    Templeton, A.R.3
  • 44
    • 0038384727 scopus 로고    scopus 로고
    • Patterns of diversification in two African forest shrews: Sylvisorex johnstoni and Sylvisorex ollula (Soricidae, Insectivora) in relation to paleo-environmental changes
    • Quérouil S, Verheyen E, Dillen M, Colyn M (2003) Patterns of diversification in two African forest shrews: Sylvisorex johnstoni and Sylvisorex ollula (Soricidae, Insectivora) in relation to paleo-environmental changes. Mol Phylogenet Evol 28:24-37.
    • (2003) Mol Phylogenet Evol , vol.28 , pp. 24-37
    • Quérouil, S.1    Verheyen, E.2    Dillen, M.3    Colyn, M.4
  • 45
    • 78650939558 scopus 로고    scopus 로고
    • Tracer Version 1.4. Available from .
    • Rambaut A, Drummond AJ (2007) Tracer Version 1.4. Available from
    • (2007)
    • Rambaut, A.1    Drummond, A.J.2
  • 47
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas J, Sanchez-Delbarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19:2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-Delbarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 48
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123:585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 50
    • 0032055149 scopus 로고    scopus 로고
    • Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history
    • Templeton AR (1998) Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Mol Ecol 7:381-397.
    • (1998) Mol Ecol , vol.7 , pp. 381-397
    • Templeton, A.R.1
  • 51
    • 0036262936 scopus 로고    scopus 로고
    • Optimal ramdomization strategies when testing the existence of a phylogeographic structure: a reply to Petit and Grivet
    • Templeton AR (2002) Optimal ramdomization strategies when testing the existence of a phylogeographic structure: a reply to Petit and Grivet. Genetics 161:767-782.
    • (2002) Genetics , vol.161 , pp. 767-782
    • Templeton, A.R.1
  • 52
    • 1642339467 scopus 로고    scopus 로고
    • Statistical phylogeography: methods of evaluating and minimizing inference errors
    • Department of Biology, Washington University, St Louis, Missouri 63130-4899, USA.
    • Templeton AR (2004) Statistical phylogeography: methods of evaluating and minimizing inference errors, Department of Biology, Washington University, St Louis, Missouri 63130-4899, USA. Mol Ecol 10:789-809.
    • (2004) Mol Ecol , vol.10 , pp. 789-809
    • Templeton, A.R.1
  • 53
    • 0027278852 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analysis with cladogram uncertainty and recombination
    • Templeton AR, Sing CF (1993) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analysis with cladogram uncertainty and recombination. Genetics 134:659-669.
    • (1993) Genetics , vol.134 , pp. 659-669
    • Templeton, A.R.1    Sing, C.F.2
  • 54
    • 0023425198 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila
    • Templeton AR, Boerwinkle E, Sing CF (1987) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics, 117:343-351.
    • (1987) Genetics , vol.117 , pp. 343-351
    • Templeton, A.R.1    Boerwinkle, E.2    Sing, C.F.3
  • 55
    • 20444406113 scopus 로고    scopus 로고
    • Molecular phylogeny of the African pygmy mice, subgenus Nannomys (Rodentia, Murinae, Mus): implications for chromosomal evolution
    • Veyrunes F, Bitton-Davidian J, Robinson TJ, Calvet E, Denys C, Chevret P (2005) Molecular phylogeny of the African pygmy mice, subgenus Nannomys (Rodentia, Murinae, Mus): implications for chromosomal evolution. Mol Phyl Evol 36:358-369.
    • (2005) Mol Phyl Evol , vol.36 , pp. 358-369
    • Veyrunes, F.1    Bitton-Davidian, J.2    Robinson, T.J.3    Calvet, E.4    Denys, C.5    Chevret, P.6
  • 56
    • 0025923821 scopus 로고
    • Chelex 100 as a medium for simple extraction of DNA for PCR based typing from forensic material
    • Walsh PS, Metzger DA, Higuchi R (1991) Chelex 100 as a medium for simple extraction of DNA for PCR based typing from forensic material. BioTechniques 10:506-513.
    • (1991) BioTechniques , vol.10 , pp. 506-513
    • Walsh, P.S.1    Metzger, D.A.2    Higuchi, R.3


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