Chromosomal mapping of rRNA genes, core histone genes and telomeric sequences in Brachidontes puniceus and Brachidontes rodriguezi (Bivalvia, Mytilidae)

BMC Genetics

Volumn 11, Issue , 2010, Pages

  Pérez García, Concepción ^a   Guerra Varela, Jorge ^a   Morán, Paloma ^a   Pasantes, Juan J ^a  

^a UNIVERSITY OF VIGO   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE; RIBOSOME DNA; RIBOSOME RNA;

ARTICLE; BRACHIDONTES PUNICEUS; BRACHIDONTES RODRIGUEZI; CHROMOSOME BAND; CHROMOSOME MAP; CHROMOSOME MARKER; CHROMOSOME REARRANGEMENT; CHROMOSOME SIZE; COMPARATIVE STUDY; FLUOROCHROME STAINING; GENE CLUSTER; GENE SEQUENCE; IN SITU HYBRIDIZATION; KARYOTYPE; MOLECULAR EVOLUTION; MORPHOLOGY; MUSSEL; MYTILIDAE; NONHUMAN; TELOMERE; VERTEBRATE; ANIMAL; DNA SEQUENCE; FEMALE; FLUORESCENCE IN SITU HYBRIDIZATION; GENETICS; KARYOTYPING; MALE; MULTIGENE FAMILY; RNA GENE;

BIVALVIA; BRACHIDONTES; BRACHIDONTES RODRIGUEZI; MYTILIDAE; VERTEBRATA;

ANIMALS; CHROMOSOME MAPPING; DNA, RIBOSOMAL; FEMALE; GENES, RRNA; HISTONES; IN SITU HYBRIDIZATION, FLUORESCENCE; KARYOTYPING; MALE; MULTIGENE FAMILY; MYTILIDAE; SEQUENCE ANALYSIS, DNA; TELOMERE;

EID: 78650929445     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-11-109     Document Type: Article

References (41)

1. Giribet G, Distel D. Bivalve phylogeny and molecular data. Systematics and Phylogeography of Mollusks 2003, 45-90. Washington DC, Smithsonian Books, Lydeard C, Lindberg DR.
2. Leitão A, Chaves R. Banding for chromosomal identification in bivalves: A 20-year history. Aquaculture 1. Dynamic Biochemistry, Process Biotechnology and Molecular Biology 2008, 2(Special Issue 1):44-49. Global Science Books, Russo R.
3. Thiriot-Quiévreux C. Review of the literature on bivalve cytogenetics in the last ten years. Cah Biol Mar 2002, 43:17-26.
4. Guo X, Wang Y, Xu Z. Genomic analyses using fluorescence in situ hybridization. Aquaculture genome technologies 2007, 289-311. Oxford, Blackwell Publishing, Liu Z.
5. Pérez-García C, Cambeiro JM, Morán P, Pasantes JJ. Chromosomal mapping of rDNAs, core histone genes and telomeric sequences in Perumytilus purpuratus (Bivalvia: Mytilidae). J Exp Mar Biol Ecol 2010, 395:199-205.
6. Martínez-Expósito MJ, Méndez J, Pasantes JJ. Analysis of NORs and NOR-associated heterochomatin in the mussel Mytillus galloprovincialis Lmk. Chromosome Res 1997, 5:268-273.
7. Insua A, Méndez J. Physical mapping and activity of ribosomal RNA genes in mussel Mytilus galloprovincialis. Hereditas 1998, 128:189-194. 10.1111/j.1601-5223.1998.00189.x, 9760868.
8. Torreiro A, Martínez-Expósito MJ, Trucco MI, Pasantes JJ. Cytogenetics in Brachidontes rodriguezi d'Orb (Bivalvia, Mytilidae). Chromosome Res 1999, 7:49-55. 10.1023/A:1009275311888, 10219732.
9. González-Tizón AM, Martínez-Lage A, Rego I, Ausio J, Méndez J. DNA content, karyotypes, and chromosomal location of 18S-5.8S-28S ribosomal loci in some species of bivalve molluscs from the Pacific Canadian coast. Genome 2000, 43:1065-1072.
10. Vitturi R, Gianguzza P, Colomba MS, Riggio S. Cytogenetic characterization of Brachidontes pharaonis (Fisher P, 1870): Karyotype, banding and fluorescent in situ hybridization (FISH) (Mollusca: Bivalvia: Mytilidae). Ophelia 2000, 52:213-220.
11. Insua A, Freire R, Ríos R, Méndez J. The 5S rDNA of mussels Mytilus galloprovincialis and M. edulis: sequence, variation and chromosomal location. Chromosome Res 2001, 9:495-505. 10.1023/A:1011636714052, 11592484.
12. Insua A, Freire R, Méndez J. The 5S rDNA of the bivalve Cerastoderma edule: nucleotide sequence of the repeat unit and chromosomal location relative to 18-28S rDNA. Genet Sel Evol 1999, 31:509-518.
13. Cross I, Díaz E, Sánchez I, Rebordinos L. Molecular and cytogenetic characterization of Crassostrea angulata chromosomes. Aquaculture 2005, 247:135-144.
14. Wang Y, Xu Z, Guo X. Chromosomal mapping of 5S ribosomal RNA genes in the eastern oyster, Crassostrea virginica Gmelin by fluorescence in situ hybridization. J Shellfish Res 2005, 24:959-964.
15. Insua A, López-Piñón MJ, Méndez J. Characterization of Aequipecten opercularis (Bivalvia: Pectinidae) chromosomes by different staining techniques and fluorescent in situ hybridization. Genes Genet Syst 1998, 73:193-200. 10.1266/ggs.73.193, 9880917.
16. Wang Y, Guo X. Chromosomal rearrangement in Pectinidae revealed by rRNA loci and implications for bivalve evolution. Biol Bull 2004, 207:247-256. 10.2307/1543213, 15616355.
17. López-Piñón MJ, Insua A, Méndez J. Chromosome analysis and mapping of ribosomal genes by one and two-color fluorescent in situ hybridization in Hinnites distortus (Bivalvia: Pectinidae). J Heredity 2005, 96:52-58.
18. Insua A, López-Piñón MJ, Freire R, Méndez J. Karyotype and chromosomal location of 18S-28S and 5S ribosomal DNA in the scallops Pecten maximus and Mimachlamys varia (Bivalvia: Pectinidae). Genetica 2006, 126:291-301. 10.1007/s10709-005-7408-7, 16636923.
19. Huang X, Hu J, Hu X, Zhang G, Zhang L, Wang S, Lu W, Bao Z. Cytogenetic characterization of the bay scallop, Argopecten irradians irradians, by multiple staining techniques and fluorescence in situ hybridization. Genes Genet Syst 2007, 82:257-263. 10.1266/ggs.82.257, 17660696.
20. Huang X, Hu X, Hu J, Zhang L, Wang S, Lu W, Bao Z. Mapping of ribosomal DNA and (TTAGGG)n telomeric sequence by FISH in the bivalve Patinopecten yessoensis (Jay, 1857). J Moll Stud 2007, 73:393-398.
21. Drabent B, Kim JS, Albig W, Prats E, Cornudella L, Doenecke D. Mytilus edulis histone gene clusters containing only H1 genes. J Mol Evol 1999, 49:645-655. 10.1007/PL00006585, 10552045.
22. Eirín-López JM, González-Tizón AM, Martínez A, Méndez J. Molecular and evolutionary analysis of mussel histone genes (Mytilus spp): possible evidence of an "orphon origin" for H1 histone genes. J Mol Evol 2002, 55:272-283.
23. Albig W, Warthorst U, Drabent B, Prats E, Cornudella L, Doenecke D. Mytilus edulis core histone genes are organized in two clusters devoid of linker histone genes. J Mol Evol 2003, 56:597-606. 10.1007/s00239-002-2428-8, 12698296.
24. Eirín-López JM, Ruiz MF, González-Tizón AM, Martínez A, Sánchez L, Méndez J. Molecular evolutionary characterization of the mussel Mytilus histone multigene family: first record of a tandemly repeated unit of a five histone genes containing an H1 subtype whit "orphon" features. J Mol Evol 2004, 58:131-144.
25. Li C, Song L, Zhao J, Zou H, Su J, Zhang H. Genomic organization, nucleotide sequence analysis of the core histone genes cluster in Chlamys farreri and molecular evolution assessment of the H2A and H2B. DNA Seq 2006, 17:440-445.
26. González-Romero R, Ausió J, Méndez J, Eirín-López JM. Early evolution of histone genes: Prevalence of an 'orphon' H1 lineage in Protostomes and birth-and-death process in the H2A family. J Mol Evol 2008, 66:505-518.
27. Zhang L, Bao Z, Wang S, Huang X, Hu J. Chromosome rearrangements in Pectinidae (Bivalvia: Pteriomorphia) implied based on chromosomal localization of histone H3 gene in four scallops. Genetica 2007, 130:193-198. 10.1007/s10709-006-9006-8, 16909332.
28. Plohl M, Prats E, Martínez-Lage E, González-Tizón A, Méndez J, Cornudella L. Telomeric localization of the vertebrate-type hexamer repeat, (TTAGGG)n, in the wedgeshell clam Donax trunculus and other marine invertebrate genomes. J Biol Chem 2002, 277:19839-19846. 10.1074/jbc.M201032200, 11907038.
29. Levan A, Fredga K, Sandberg AA. Nomenclature for centromeric position on chromosomes. Hereditas 1964, 52:201-220.
30. Estoup A, Largiadèr CR, Perrot E, Chourrout D. Rapid one-tube DNA extraction for reliable PCR detection of fish polymorphic markers and transgenes. Mol Mar Biol Biotechnol 1996, 5:295-298.
31. White TJ, Burms T, Lee S, Taylor JW. Amplification and direct sequences of fungal ribosomal RNA genes for phylogenetics. PCR protocols: a guide to methods and applications 1990, 315-322. New York, Academic Press, Inmus MA, Guelfand DH, Sminsky JJ, White TJ.
32. Fang BL, De Baere R, Vandenberghe A, De Wachter R. Sequences of three molluscan 5S ribosomal RNAs confirm the validity of a dynamic secondary structure model. Nucleic Acids Res 1982, 10:4679-4685. 10.1093/nar/10.15.4679, 321121, 7133995.
33. Hurtado NS, Pasantes JJ. Surface spreading of synaptonemal complexes in the clam Dosinia exoleta (Mollusca, Bivalvia). Chromosome Res 2005, 13:575-580. 10.1007/s10577-005-0983-8, 16170622.
34. Thiriot-Quiévreux C. Advances in cytogenetics of aquatic organisms. Genetics and Evolution of Aquatic Organisms 1994, 369-388. London, Chapman & Hall, Beaumont AR.
35. Kühl H, Rötger S, Heilbronner H, Enders H, Schempp W. Loss of Y chromosomal PAR2-region in four familial cases of satellite Y chromosomes (Yqs). Chromosome Res 2001, 9:215-222.
36. Deiana AM, Cau A, Salvadori S, Coluccia E, Cannas R, Milia A, Tagliavini J. Major and 5S ribosomal sequences of the largemouth bass Micropterus salmoides (Perciformes, Centrarchidae) are localized in GC-rich regions of the genome. Chromosome Res 2000, 8:213-218. 10.1023/A:1009248828365, 10841048.
37. Abuín M, Martínez P, Sánchez L. Localization of repetitive telomeric sequence (TTAGGG)n in four salmonid species. Genome 1996, 39:1035-1038.
38. Zhdanova NS, Minina JM, Karamisheva TV, Draskovic I, Rubtsov NB, Londoño-Vallejo JA. The very long telomeres in Sorex granarius (Soricidae, Eulipothyphla) contain ribosomal DNA. Chromosome Res 2007, 15:881-890. 10.1007/s10577-007-1170-x, 17899406.
39. Kaplan FS, Murray J, Sylvester JE, Gonzalez IL, O'Connor P, Doering JL, Muenke M, Emanuel BS, Zasloff MA. The topographic organization of repetitive DNA in the human nucleolus. Genomics 1993, 15:123-132. 10.1006/geno.1993.1020, 8432523.
40. Eirín-López JM, González-Romero R, Dryhurst D, Méndez J, Ausió J. Long-term evolution of histone families: old notions and new insights into their mechanisms of diversification across eukaryotes. Evolutionary Biology 2009, 139-162. Berlin, Springer-Verlag, Pontarotti P, 2708153, 19549324.
41. Aguirre ML, Pérez SI, Sirch YN. Morphological variability of Brachidontes Swainson (Bivalvia, Mytilidae) in the marine Quaternary of Argentina (SW Atlantic). Paleogeogr Paleoclimatol Paleoecol 2006, 239:100-125.