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Volumn 193, Issue 2, 2011, Pages 429-440

Altered regulation of the ompf porin by fis in escherichia coli during an evolution experiment and between B and K-12 strains

Author keywords

[No Author keywords available]

Indexed keywords

OUTER MEMBRANE PROTEIN F; PORIN;

EID: 78650873082     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01341-10     Document Type: Article
Times cited : (16)

References (87)
  • 1
    • 0032716841 scopus 로고    scopus 로고
    • Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid
    • Ali Azam, T., A. Iwata, A. Nishimura, S. Ueda, and A. Ishihama. 1999. Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J. Bacteriol. 181:6361-6370.
    • (1999) J. Bacteriol. , vol.181 , pp. 6361-6370
    • Ali Azam, T.1    Iwata, A.2    Nishimura, A.3    Ueda, S.4    Ishihama, A.5
  • 2
    • 0026620949 scopus 로고
    • Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli
    • Ball, C. A., R. Osuna, K. C. Ferguson, and R. C. Johnson. 1992. Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli. J. Bacteriol. 174:8043-8056.
    • (1992) J. Bacteriol. , vol.174 , pp. 8043-8056
    • Ball, C.A.1    Osuna, R.2    Ferguson, K.C.3    Johnson, R.C.4
  • 3
    • 70350641005 scopus 로고    scopus 로고
    • Genome evolution and adaptation in a long-term experiment with Escherichia coli
    • Barrick, J. E., et al. 2009. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461:1243-1247.
    • (2009) Nature , vol.461 , pp. 1243-1247
    • Barrick, J.E.1
  • 4
    • 0032458848 scopus 로고    scopus 로고
    • Hierarchical and cooperative binding of OmpR to a fusion construct containing the ompC and ompF upstream regulatory sequences of Escherichia coli
    • Bergstrom, L. C., L. Qin, S. L. Harlocker, L. A. Egger, and M. Inouye. 1998. Hierarchical and cooperative binding of OmpR to a fusion construct containing the ompC and ompF upstream regulatory sequences of Escherichia coli. Genes Cells 3:777-788.
    • (1998) Genes Cells , vol.3 , pp. 777-788
    • Bergstrom, L.C.1    Qin, L.2    Harlocker, S.L.3    Egger, L.A.4    Inouye, M.5
  • 5
    • 2342441328 scopus 로고    scopus 로고
    • From structure and dynamics of protein L7/L12 to molecular switching in ribosome
    • Bocharov, E. V., et al. 2004. From structure and dynamics of protein L7/L12 to molecular switching in ribosome. J. Biol. Chem. 279:17697-17706.
    • (2004) J. Biol. Chem. , vol.279 , pp. 17697-17706
    • Bocharov, E.V.1
  • 6
    • 0028815976 scopus 로고
    • The transcriptional activator protein FIS: DNA interactions and cooperative interactions with RNA polymerase at the Escherichia coli rrnB P1 promoter
    • Bokal, A. J., W. Ross, and R. L. Gourse. 1995. The transcriptional activator protein FIS: DNA interactions and cooperative interactions with RNA polymerase at the Escherichia coli rrnB P1 promoter. J. Mol. Biol. 245:197-207.
    • (1995) J. Mol. Biol. , vol.245 , pp. 197-207
    • Bokal, A.J.1    Ross, W.2    Gourse, R.L.3
  • 7
    • 0025140817 scopus 로고
    • FIS-dependent trans-activation of tRNA and rRNA operons of Escherichia coli
    • Bosch, L., L. Nilsson, E. Vijgenboom, and H. Verbeek. 1990. FIS-dependent trans-activation of tRNA and rRNA operons of Escherichia coli. Biochim. Biophys. Acta 1050:293-301.
    • (1990) Biochim. Biophys. Acta , vol.1050 , pp. 293-301
    • Bosch, L.1    Nilsson, L.2    Vijgenboom, E.3    Verbeek, H.4
  • 8
    • 34948885665 scopus 로고    scopus 로고
    • Effects of Fis on Escherichia coli gene expression during different growth stages
    • Bradley, M. D., M. B. Beach, A. P. Jason de Koning, T. S. Pratt, and R. Osuna. 2007. Effects of Fis on Escherichia coli gene expression during different growth stages. Microbiology 153:2922-2940.
    • (2007) Microbiology , vol.153 , pp. 2922-2940
    • Bradley, M.D.1    Beach, M.B.2    Jason De Koning, A.P.3    Pratt, T.S.4    Osuna, R.5
  • 9
    • 33645827531 scopus 로고    scopus 로고
    • Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: A comparative genomics approach
    • Chen, S. L., et al. 2006. Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: A comparative genomics approach. Proc. Natl. Acad. Sci. U. S. A. 103:5977-5982.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 5977-5982
    • Chen, S.L.1
  • 10
    • 0037417962 scopus 로고    scopus 로고
    • Parallel changes in gene expression after 20,000 generations of evolution in Escherichia coli
    • Cooper, T. F., D. E. Rozen, and R. E. Lenski. 2003. Parallel changes in gene expression after 20,000 generations of evolution in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 100:1072-1077.
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 1072-1077
    • Cooper, T.F.1    Rozen, D.E.2    Lenski, R.E.3
  • 11
    • 40149109210 scopus 로고    scopus 로고
    • Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli
    • Cooper, T. F., S. K. Remold, R. E. Lenski, and D. Schneider. 2008. Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli. PLoS Genet. 4:e35.
    • (2008) PLoS Genet. , vol.4
    • Cooper, T.F.1    Remold, S.K.2    Lenski, R.E.3    Schneider, D.4
  • 12
    • 15544376421 scopus 로고    scopus 로고
    • Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selection
    • Crozat, E., N. Philippe, R. E. Lenski, J. Geiselmann, and D. Schneider. 2005. Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selection. Genetics 169:523-532.
    • (2005) Genetics , vol.169 , pp. 523-532
    • Crozat, E.1    Philippe, N.2    Lenski, R.E.3    Geiselmann, J.4    Schneider, D.5
  • 13
    • 77955933105 scopus 로고    scopus 로고
    • Parallel genetic and phenotypic evolution of DNA superhelicity in experimental populations of Escherichia coli
    • Crozat, E., et al. 2010. Parallel genetic and phenotypic evolution of DNA superhelicity in experimental populations of Escherichia coli. Mol. Biol. Evol. 27:2113-2128.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 2113-2128
    • Crozat, E.1
  • 14
    • 70449533064 scopus 로고    scopus 로고
    • Tracing ancestors and relatives of Escherichia coli B, and the derivation of B strains REL606 and BL21(DE3)
    • Daegelen, P., F. W. Studier, R. E. Lenski, S. Cure, and J. F. Kim. 2009. Tracing ancestors and relatives of Escherichia coli B, and the derivation of B strains REL606 and BL21(DE3). J. Mol. Biol. 394:634-643.
    • (2009) J. Mol. Biol. , vol.394 , pp. 634-643
    • Daegelen, P.1    Studier, F.W.2    Lenski, R.E.3    Cure, S.4    Kim, J.F.5
  • 15
    • 2442560235 scopus 로고    scopus 로고
    • H-NS: A universal regulator for a dynamic genome
    • Dorman, C. J. 2004. H-NS: A universal regulator for a dynamic genome. Nat. Rev. Microbiol. 2:391-400.
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 391-400
    • Dorman, C.J.1
  • 16
    • 0034761862 scopus 로고    scopus 로고
    • Epistasis between new mutations and genetic background and a test of genetic canalization
    • Elena, S. F., and R. E. Lenski. 2001. Epistasis between new mutations and genetic background and a test of genetic canalization. Evolution 55:1746-1752.
    • (2001) Evolution , vol.55 , pp. 1746-1752
    • Elena, S.F.1    Lenski, R.E.2
  • 17
    • 31144444027 scopus 로고    scopus 로고
    • Genomic divergence of Escherichia coli strains: Evidence for horizontal transfer and variation in mutation rates
    • Elena, S. F., T. S. Whittam, C. L. Winkworth, M. A. Riley, and R. E. Lenski. 2005. Genomic divergence of Escherichia coli strains: Evidence for horizontal transfer and variation in mutation rates. Int. Microbiol. 8:271-278.
    • (2005) Int. Microbiol. , vol.8 , pp. 271-278
    • Elena, S.F.1    Whittam, T.S.2    Winkworth, C.L.3    Riley, M.A.4    Lenski, R.E.5
  • 18
    • 0029880342 scopus 로고    scopus 로고
    • Antagonistic involvement of FIS and H-NS proteins in the transcriptional control of hns expression
    • Falconi, M., A. Brandi, A. La Teana, C. O. Gualerzi, and C. L. Pon. 1996. Antagonistic involvement of FIS and H-NS proteins in the transcriptional control of hns expression. Mol. Microbiol. 19:965-975.
    • (1996) Mol. Microbiol. , vol.19 , pp. 965-975
    • Falconi, M.1    Brandi, A.2    La Teana, A.3    Gualerzi, C.O.4    Pon, C.L.5
  • 19
    • 33644855129 scopus 로고    scopus 로고
    • Common and variable contributions of Fis residues to high-affinity binding at different DNA sequences
    • Feldman-Cohen, L. S., et al. 2006. Common and variable contributions of Fis residues to high-affinity binding at different DNA sequences. J. Bacteriol. 188:2081-2095.
    • (2006) J. Bacteriol. , vol.188 , pp. 2081-2095
    • Feldman-Cohen, L.S.1
  • 20
    • 0026527078 scopus 로고
    • Involvement of Fis protein in replication of the Escherichia coli chromosome
    • Filutowicz, M., W. Ross, J. Wild, and R. L. Gourse. 1992. Involvement of Fis protein in replication of the Escherichia coli chromosome. J. Bacteriol. 174: 398-407.
    • (1992) J. Bacteriol. , vol.174 , pp. 398-407
    • Filutowicz, M.1    Ross, W.2    Wild, J.3    Gourse, R.L.4
  • 21
    • 0026470852 scopus 로고
    • The Fis protein: It's not just for DNA inversion anymore
    • Erratum, 7:1023, 1993
    • Finkel, S. E., and R. C. Johnson. 1992. The Fis protein: It's not just for DNA inversion anymore. Mol. Microbiol. 6:3257-3265.
    • (1992) Mol. Microbiol. , vol.6 , pp. 3257-3265
    • Finkel, S.E.1    Johnson, R.C.2
  • 22
    • 33846650968 scopus 로고    scopus 로고
    • The trans-envelope Tol-Pal complex is part of the cell division machinery and required for proper outer-membrane invagination during cell constriction in E. coli
    • Gerding, M. A., Y. Ogata, N. D. Pecora, H. Niki, and P. A. J. De Boer. 2007. The trans-envelope Tol-Pal complex is part of the cell division machinery and required for proper outer-membrane invagination during cell constriction in E. coli. Mol. Microbiol. 63:1008-1025.
    • (2007) Mol. Microbiol. , vol.63 , pp. 1008-1025
    • Gerding, M.A.1    Ogata, Y.2    Pecora, N.D.3    Niki, H.4    De Boer, P.A.J.5
  • 23
    • 0029844676 scopus 로고    scopus 로고
    • FIS is a regulator of metabolism in Escherichia coli
    • Gonzalez-Gil, G., P. Bringmann, and R. Kahmann. 1996. FIS is a regulator of metabolism in Escherichia coli. Mol. Microbiol. 22:21-29.
    • (1996) Mol. Microbiol. , vol.22 , pp. 21-29
    • Gonzalez-Gil, G.1    Bringmann, P.2    Kahmann, R.3
  • 24
    • 25144476232 scopus 로고    scopus 로고
    • A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure
    • Hardy, C. D., and N. R. Cozzarelli. 2005. A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure. Mol. Microbiol. 57:1636-1652.
    • (2005) Mol. Microbiol. , vol.57 , pp. 1636-1652
    • Hardy, C.D.1    Cozzarelli, N.R.2
  • 26
    • 14244256764 scopus 로고    scopus 로고
    • Fis regulates transcriptional induction of RpoS in Salmonella enterica
    • Hirsch, M., and T. Elliott. 2005. Fis regulates transcriptional induction of RpoS in Salmonella enterica. J. Bacteriol. 187:1568-1580.
    • (2005) J. Bacteriol. , vol.187 , pp. 1568-1580
    • Hirsch, M.1    Elliott, T.2
  • 27
    • 14044271464 scopus 로고    scopus 로고
    • Oxidative stress inactivates cobalamine-independent methionine synthase (MetE) in Escherichia coli
    • Hondorp, E. R., and R. G. Matthews. 2004. Oxidative stress inactivates cobalamine-independent methionine synthase (MetE) in Escherichia coli. PLoS Biol. 2:e336.
    • (2004) PLoS Biol. , vol.2
    • Hondorp, E.R.1    Matthews, R.G.2
  • 28
    • 0030580087 scopus 로고    scopus 로고
    • Identification of the bases in the ompF regulatory region, which interact with the transcription factor OmpR
    • Huang, K. J., and M. M. Igo. 1996. Identification of the bases in the ompF regulatory region, which interact with the transcription factor OmpR. J. Mol. Biol. 262:615-628.
    • (1996) J. Mol. Biol. , vol.262 , pp. 615-628
    • Huang, K.J.1    Igo, M.M.2
  • 29
    • 70350686881 scopus 로고    scopus 로고
    • Genome sequences of Escherichia coli B strains REL606 and BL21(DE3)
    • Jeong, H., et al. 2009. Genome sequences of Escherichia coli B strains REL606 and BL21(DE3). J. Mol. Biol. 394:644-652.
    • (2009) J. Mol. Biol. , vol.394 , pp. 644-652
    • Jeong, H.1
  • 30
    • 0022545522 scopus 로고
    • Host protein requirements for in vitro site-specific DNA inversion
    • Johnson, R. C., M. F. Bruist, and M. I. Simon. 1986. Host protein requirements for in vitro site-specific DNA inversion. Cell 46:531-539.
    • (1986) Cell , vol.46 , pp. 531-539
    • Johnson, R.C.1    Bruist, M.F.2    Simon, M.I.3
  • 31
    • 0021952570 scopus 로고
    • G inversion in bacteriophage Mu DNA is stimulated by a site within the invertase gene and a host factor
    • Kahmann, R., F. Rudt, C. Koch, and G. Mertens. 1985. G inversion in bacteriophage Mu DNA is stimulated by a site within the invertase gene and a host factor. Cell 41:771-780.
    • (1985) Cell , vol.41 , pp. 771-780
    • Kahmann, R.1    Rudt, F.2    Koch, C.3    Mertens, G.4
  • 32
    • 4344716137 scopus 로고    scopus 로고
    • A global role for Fis in the transcriptional control of metabolism and type III secretion in Salmonella enterica serovar Typhimurium
    • Kelly, A., et al. 2004. A global role for Fis in the transcriptional control of metabolism and type III secretion in Salmonella enterica serovar Typhimurium. Microbiology 150:2037-2053.
    • (2004) Microbiology , vol.150 , pp. 2037-2053
    • Kelly, A.1
  • 33
    • 12744271881 scopus 로고    scopus 로고
    • Structural characterization of Escherichia coli sensor histidine kinase EnvZ: The periplasmic C-terminal core domain is critical for homodimerization
    • Khorchid, A., M. Inouye, and M. Ikura. 2005. Structural characterization of Escherichia coli sensor histidine kinase EnvZ: The periplasmic C-terminal core domain is critical for homodimerization. Biochem. J. 385:255-264.
    • (2005) Biochem. J. , vol.385 , pp. 255-264
    • Khorchid, A.1    Inouye, M.2    Ikura, M.3
  • 34
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 35
    • 36549061403 scopus 로고    scopus 로고
    • The DNA nucleoid-associated protein Fis coordinates the expression of the main virulence genes in the phytopathogenic bacterium Erwinia chrysanthemi
    • Lautier, T., and W. Nasser. 2007. The DNA nucleoid-associated protein Fis coordinates the expression of the main virulence genes in the phytopathogenic bacterium Erwinia chrysanthemi. Mol. Microbiol. 66:1474-1490.
    • (2007) Mol. Microbiol. , vol.66 , pp. 1474-1490
    • Lautier, T.1    Nasser, W.2
  • 36
    • 0013889184 scopus 로고
    • Genetics of host-controlled restriction and modification of deoxyribonucleic acid in Escherichia coli
    • Lederberg, S. 1966. Genetics of host-controlled restriction and modification of deoxyribonucleic acid in Escherichia coli. J. Bacteriol. 91:1029-1036.
    • (1966) J. Bacteriol. , vol.91 , pp. 1029-1036
    • Lederberg, S.1
  • 38
    • 1842472689 scopus 로고    scopus 로고
    • Phenotypic and genomic evolution during a 20,000- generation experiment with the bacterium Escherichia coli
    • Lenski, R. E. 2004. Phenotypic and genomic evolution during a 20,000- generation experiment with the bacterium Escherichia coli. Plant Breed. Rev. 24:225-265.
    • (2004) Plant Breed. Rev. , vol.24 , pp. 225-265
    • Lenski, R.E.1
  • 39
    • 0026279651 scopus 로고
    • Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations
    • Lenski, R. E., M. R. Rose, S. C. Simpson, and S. C. Tadler. 1991. Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations. Am. Nat. 138:1315-1341.
    • (1991) Am. Nat. , vol.138 , pp. 1315-1341
    • Lenski, R.E.1    Rose, M.R.2    Simpson, S.C.3    Tadler, S.C.4
  • 40
    • 0037381428 scopus 로고    scopus 로고
    • Rates of DNA sequence evolution in experimental populations of Escherichia coli during 20,000 generations
    • Lenski, R. E., C. L. Winkworth, and M. A. Riley. 2003. Rates of DNA sequence evolution in experimental populations of Escherichia coli during 20,000 generations. J. Mol. Evol. 56:498-508.
    • (2003) J. Mol. Evol. , vol.56 , pp. 498-508
    • Lenski, R.E.1    Winkworth, C.L.2    Riley, M.A.3
  • 41
    • 33846248250 scopus 로고    scopus 로고
    • The small nucleoid protein Fis is involved in Vibrio cholerae quorum sensing
    • Lenz, D. H., and B. L. Bassler. 2007. The small nucleoid protein Fis is involved in Vibrio cholerae quorum sensing. Mol. Microbiol. 63:859-871.
    • (2007) Mol. Microbiol. , vol.63 , pp. 859-871
    • Lenz, D.H.1    Bassler, B.L.2
  • 42
    • 0030796260 scopus 로고    scopus 로고
    • Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: Application to open reading frame characterization
    • Link, A. J., D. Phillips, and G. M. Church. 1997. Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: Application to open reading frame characterization. J. Bacteriol. 179:6228-6237.
    • (1997) J. Bacteriol. , vol.179 , pp. 6228-6237
    • Link, A.J.1    Phillips, D.2    Church, G.M.3
  • 43
    • 0345730808 scopus 로고    scopus 로고
    • Growth phase-dependent regulation and stringent control of fis are conserved processes in enteric bacteria and involve a single promoter (fisP) in Escherichia coli
    • Mallik, P., et al. 2004. Growth phase-dependent regulation and stringent control of fis are conserved processes in enteric bacteria and involve a single promoter (fisP) in Escherichia coli. J. Bacteriol. 186:122-135.
    • (2004) J. Bacteriol. , vol.186 , pp. 122-135
    • Mallik, P.1
  • 44
    • 33748662456 scopus 로고    scopus 로고
    • DksA is required for growth phase-dependent regulation, growth phasedependent control, and stringent control of fis expression in Escherichia coli
    • Mallik, P., B. J. Paul, S. T. Rutherford, R. L. Gourse, and R. Osuna. 2006. DksA is required for growth phase-dependent regulation, growth phasedependent control, and stringent control of fis expression in Escherichia coli. J. Bacteriol. 188:5775-5782.
    • (2006) J. Bacteriol. , vol.188 , pp. 5775-5782
    • Mallik, P.1    Paul, B.J.2    Rutherford, S.T.3    Gourse, R.L.4    Osuna, R.5
  • 45
    • 0030664684 scopus 로고    scopus 로고
    • Fis, an accessorial factor for transcriptional activation of the mar (multiple antibiotic resistance) promoter of Escherichia coli in the presence of the activator MarA, SoxS, or Rob
    • Martin, R. G., and J. L. Rosner. 1997. Fis, an accessorial factor for transcriptional activation of the mar (multiple antibiotic resistance) promoter of Escherichia coli in the presence of the activator MarA, SoxS, or Rob. J. Bacteriol. 179:7410-7419.
    • (1997) J. Bacteriol. , vol.179 , pp. 7410-7419
    • Martin, R.G.1    Rosner, J.L.2
  • 46
    • 0022896755 scopus 로고
    • Interaction between two regulatory proteins in osmoregulatory expression of ompF and ompC in Escherichia coli: A novel ompR mutation suppresses pleiotropic defects caused by an envZ mutation
    • Matsuyama, S.-I., T. Mizuno, and S. Mizushima. 1986. Interaction between two regulatory proteins in osmoregulatory expression of ompF and ompC in Escherichia coli: A novel ompR mutation suppresses pleiotropic defects caused by an envZ mutation. J. Bacteriol. 168:1309-1314.
    • (1986) J. Bacteriol. , vol.168 , pp. 1309-1314
    • Matsuyama, S.-I.1    Mizuno, T.2    Mizushima, S.3
  • 48
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1972) Experiments in Molecular Genetics
    • Miller, J.H.1
  • 49
    • 0025707549 scopus 로고
    • Osmoregulatory expression of porin genes in Escherichia coli: A comparative study on strains B and K-12
    • Mizuno, T., A. Shinkai, K. Matsui, and S. Mizushima. 1990. Osmoregulatory expression of porin genes in Escherichia coli: A comparative study on strains B and K-12. FEMS Microbiol. Lett. 68:289-294.
    • (1990) FEMS Microbiol. Lett. , vol.68 , pp. 289-294
    • Mizuno, T.1    Shinkai, A.2    Matsui, K.3    Mizushima, S.4
  • 50
    • 0012690768 scopus 로고    scopus 로고
    • Transcription factor as a topological homeostat
    • Muskhelishvili, G., and A. Travers. 2003. Transcription factor as a topological homeostat. Front. Biosci. 8:279-285.
    • (2003) Front. Biosci. , vol.8 , pp. 279-285
    • Muskhelishvili, G.1    Travers, A.2
  • 52
    • 0025069971 scopus 로고
    • The role of FIS in trans activation of stable RNA operons of E. coli
    • Nilsson, L., A. Vannet, E. Vijgenboom, and L. Bosch. 1990. The role of FIS in trans activation of stable RNA operons of E. coli. EMBO J. 9:727-734.
    • (1990) EMBO J. , vol.9 , pp. 727-734
    • Nilsson, L.1    Vannet, A.2    Vijgenboom, E.3    Bosch, L.4
  • 53
    • 0028228490 scopus 로고
    • Factor for inversion stimulation-dependent growth rate regulation of individual tRNA species in Escherichia coli
    • Nilsson, L., and V. Emilsson. 1994. Factor for inversion stimulation-dependent growth rate regulation of individual tRNA species in Escherichia coli. J. Biol. Chem. 269:9460-9465.
    • (1994) J. Biol. Chem. , vol.269 , pp. 9460-9465
    • Nilsson, L.1    Emilsson, V.2
  • 54
    • 33749988005 scopus 로고    scopus 로고
    • Roles for DNA supercoiling and the Fis protein in modulating expression of virulence genes during intracellular growth of Salmonella enterica serovar Typhimurium
    • O Cróinín, T., R. K. Carroll, A. Kelly, and C. J. Dorman. 2006. Roles for DNA supercoiling and the Fis protein in modulating expression of virulence genes during intracellular growth of Salmonella enterica serovar Typhimurium. Mol. Microbiol. 62:869-882.
    • (2006) Mol. Microbiol. , vol.62 , pp. 869-882
    • O Cróinín, T.1    Carroll, R.K.2    Kelly, A.3    Dorman, C.J.4
  • 55
    • 0036033707 scopus 로고    scopus 로고
    • Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12
    • Oshima, T., et al. 2002. Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12. Mol. Microbiol. 46:281-291.
    • (2002) Mol. Microbiol. , vol.46 , pp. 281-291
    • Oshima, T.1
  • 56
    • 4444325711 scopus 로고    scopus 로고
    • A dedicated translation factor controls the synthesis of the global regulator Fis
    • Owens, R. M., et al. 2004. A dedicated translation factor controls the synthesis of the global regulator Fis. EMBO J. 23:3375-3385.
    • (2004) EMBO J. , vol.23 , pp. 3375-3385
    • Owens, R.M.1
  • 57
    • 19244372639 scopus 로고    scopus 로고
    • Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts
    • Pan, C. Q., et al. 1996. Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts. J. Mol. Biol. 264:675-695.
    • (1996) J. Mol. Biol. , vol.264 , pp. 675-695
    • Pan, C.Q.1
  • 58
    • 0036182097 scopus 로고    scopus 로고
    • Positive growth rate-dependent regulation of the pdxA, ksgA, and pdxB genes of Escherichia coli K-12
    • Pease, A. J., B. R. Roa, W. Luo, and M. E. Winkler. 2002. Positive growth rate-dependent regulation of the pdxA, ksgA, and pdxB genes of Escherichia coli K-12. J. Bacteriol. 184:1359-1369.
    • (2002) J. Bacteriol. , vol.184 , pp. 1359-1369
    • Pease, A.J.1    Roa, B.R.2    Luo, W.3    Winkler, M.E.4
  • 59
    • 33747849237 scopus 로고    scopus 로고
    • Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli
    • Pelosi, L., et al. 2006. Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli. Genetics 173:1851-1869.
    • (2006) Genetics , vol.173 , pp. 1851-1869
    • Pelosi, L.1
  • 60
    • 34548769341 scopus 로고    scopus 로고
    • Evolution of global regulatory networks during a long-term experiment with Escherichia coli
    • Philippe, N., E. Crozat, R. E. Lenski, and D. Schneider. 2007. Evolution of global regulatory networks during a long-term experiment with Escherichia coli. BioEssays 29:846-860.
    • (2007) BioEssays , vol.29 , pp. 846-860
    • Philippe, N.1    Crozat, E.2    Lenski, R.E.3    Schneider, D.4
  • 62
    • 0029992419 scopus 로고    scopus 로고
    • From acids to osmZ: Multiple factors influence synthesis of the OmpF and OmpC porins in Escherichia coli
    • Pratt, L. A., W. Hsing, K. E. Gibson, and T. J. Silhavy. 1996. From acids to osmZ: Multiple factors influence synthesis of the OmpF and OmpC porins in Escherichia coli. Mol. Microbiol. 20:911-917.
    • (1996) Mol. Microbiol. , vol.20 , pp. 911-917
    • Pratt, L.A.1    Hsing, W.2    Gibson, K.E.3    Silhavy, T.J.4
  • 63
    • 1842483226 scopus 로고    scopus 로고
    • Pervasive joint influence of epistasis and plasticity on mutational effects in Escherichia coli
    • Remold, S. K., and R. E. Lenski. 2004. Pervasive joint influence of epistasis and plasticity on mutational effects in Escherichia coli. Nat. Genet. 36:423-426.
    • (2004) Nat. Genet. , vol.36 , pp. 423-426
    • Remold, S.K.1    Lenski, R.E.2
  • 64
    • 0025163439 scopus 로고
    • Escherichia coli Fis protein activates ribosomal RNA transcription in vitro and in vivo
    • Ross, W., J. F. Thompson, J. T. Newlands, and R. L. Gourse. 1990. Escherichia coli Fis protein activates ribosomal RNA transcription in vitro and in vivo. EMBO J. 9:3733-3742.
    • (1990) EMBO J. , vol.9 , pp. 3733-3742
    • Ross, W.1    Thompson, J.F.2    Newlands, J.T.3    Gourse, R.L.4
  • 65
    • 1542407109 scopus 로고    scopus 로고
    • Escherichia coli prereplication complex assembly is regulated by dynamic interplay among Fis, IHF and DnaA
    • Ryan, V. T., J. E. Grimwade, J. E. Camara, E. Crooke, and A. C. Leonard. 2004. Escherichia coli prereplication complex assembly is regulated by dynamic interplay among Fis, IHF and DnaA. Mol. Microbiol. 51:1347-1359.
    • (2004) Mol. Microbiol. , vol.51 , pp. 1347-1359
    • Ryan, V.T.1    Grimwade, J.E.2    Camara, J.E.3    Crooke, E.4    Leonard, A.C.5
  • 67
    • 0030668269 scopus 로고    scopus 로고
    • FIS modulates growth phase-dependent topological transitions of DNA in Escherichia coli
    • Schneider, R., A. Travers, and G. Muskhelishvili. 1997. FIS modulates growth phase-dependent topological transitions of DNA in Escherichia coli. Mol. Microbiol. 26:519-530.
    • (1997) Mol. Microbiol. , vol.26 , pp. 519-530
    • Schneider, R.1    Travers, A.2    Muskhelishvili, G.3
  • 68
    • 0033814887 scopus 로고    scopus 로고
    • The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA
    • Schneider, R., A. Travers, and G. Muskhelishvili. 2000. The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA. Mol. Microbiol. 38:167-175.
    • (2000) Mol. Microbiol. , vol.38 , pp. 167-175
    • Schneider, R.1    Travers, A.2    Muskhelishvili, G.3
  • 69
    • 0033404486 scopus 로고    scopus 로고
    • A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli
    • Schneider, R., A. Travers, T. Kutateladze, and G. Muskhelishvili. 1999. A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli. Mol. Microbiol. 34:953-964.
    • (1999) Mol. Microbiol. , vol.34 , pp. 953-964
    • Schneider, R.1    Travers, A.2    Kutateladze, T.3    Muskhelishvili, G.4
  • 70
    • 0035945265 scopus 로고    scopus 로고
    • An architectural role of the Escherichia coli chromatin protein FIS in organising DNA
    • Schneider, R., et al. 2001. An architectural role of the Escherichia coli chromatin protein FIS in organising DNA. Nucleic Acids Res. 29:5107-5114.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 5107-5114
    • Schneider, R.1
  • 71
    • 19044384376 scopus 로고    scopus 로고
    • Genomic comparisons among Escherichia coli strains B, K-12, and O157:H7 using IS elements as molecular markers
    • Schneider, D., et al. 2002. Genomic comparisons among Escherichia coli strains B, K-12, and O157:H7 using IS elements as molecular markers. BMC Microbiol. 2:18.
    • (2002) BMC Microbiol. , vol.2 , pp. 18
    • Schneider, D.1
  • 72
    • 0038013804 scopus 로고    scopus 로고
    • Selective regulation of ptsG expression by Fis. Formation of either activating or repressing nucleoprotein complex in response to glucose
    • Shin, D., N. Cho, S. Heu, and S. Ryu. 2003. Selective regulation of ptsG expression by Fis. Formation of either activating or repressing nucleoprotein complex in response to glucose. J. Biol. Chem. 278:14776-14781.
    • (2003) J. Biol. Chem. , vol.278 , pp. 14776-14781
    • Shin, D.1    Cho, N.2    Heu, S.3    Ryu, S.4
  • 73
    • 0023255472 scopus 로고
    • Improved single and multicopy lac-based cloning vectors for protein and operon fusions
    • Simons, R. W., F. Houman, and N. Kleckner. 1987. Improved single and multicopy lac-based cloning vectors for protein and operon fusions. Gene 53:85-96.
    • (1987) Gene , vol.53 , pp. 85-96
    • Simons, R.W.1    Houman, F.2    Kleckner, N.3
  • 74
    • 34948827356 scopus 로고    scopus 로고
    • Defining the roles of the periplasmic chaperones SurA, Skp, and DegP in Escherichia coli
    • Sklar, J. G., T. Wu, D. Kahne, and T. J. Silhavy. 2007. Defining the roles of the periplasmic chaperones SurA, Skp, and DegP in Escherichia coli. Genes Dev. 21:2473-2484.
    • (2007) Genes Dev. , vol.21 , pp. 2473-2484
    • Sklar, J.G.1    Wu, T.2    Kahne, D.3    Silhavy, T.J.4
  • 75
    • 28844478332 scopus 로고    scopus 로고
    • Low-force DNA condensation and discontinuous high-force decondensation reveal a loopstabilizing function of the protein Fis
    • Skoko, D., J. Yan, R. C. Johnson, and J. F. Marko. 2005. Low-force DNA condensation and discontinuous high-force decondensation reveal a loopstabilizing function of the protein Fis. Phys. Rev. Lett. 95:208101.
    • (2005) Phys. Rev. Lett. , vol.95 , pp. 208101
    • Skoko, D.1    Yan, J.2    Johnson, R.C.3    Marko, J.F.4
  • 76
    • 0030770467 scopus 로고    scopus 로고
    • Visualization of elongation factor Tu on the Escherichia coli ribosome
    • Stark, H., et al. 1997. Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 389:403-406.
    • (1997) Nature , vol.389 , pp. 403-406
    • Stark, H.1
  • 77
    • 70449524297 scopus 로고    scopus 로고
    • Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes
    • Studier, F. W., P. Daegelen, R. E. Lenski, S. Maslov, and J. F. Kim. 2009. Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes. J. Mol. Biol. 394:653-680.
    • (2009) J. Mol. Biol. , vol.394 , pp. 653-680
    • Studier, F.W.1    Daegelen, P.2    Lenski, R.E.3    Maslov, S.4    Kim, J.F.5
  • 78
    • 33845706511 scopus 로고    scopus 로고
    • Crystal structures of leucyl/phenylalanyl-tRNA-protein transferase and its complex with an aminoacyl-tRNA analog
    • Suto, K., et al. 2006. Crystal structures of leucyl/phenylalanyl-tRNA- protein transferase and its complex with an aminoacyl-tRNA analog. EMBO J. 25:5942-5950.
    • (2006) EMBO J. , vol.25 , pp. 5942-5950
    • Suto, K.1
  • 79
    • 0028170316 scopus 로고
    • Transmembrane signal transduction by the Escherichia coli osmotic sensor, EnvZ: Intermolecular complementation of transmembrane signalling
    • Tokishita, S., and T. Mizuno. 1994. Transmembrane signal transduction by the Escherichia coli osmotic sensor, EnvZ: Intermolecular complementation of transmembrane signalling. Mol. Microbiol. 13:435-444.
    • (1994) Mol. Microbiol. , vol.13 , pp. 435-444
    • Tokishita, S.1    Mizuno, T.2
  • 80
    • 0035082155 scopus 로고    scopus 로고
    • DNA supercoiling and transcription in Escherichia coli: The FIS connection
    • DOI 10.1016/S0300-9084(00)01217-7
    • Travers, A., R. Schneider, and G. Muskhelishvili. 2001. DNA supercoiling and transcription in Escherichia coli: The FIS connection. Biochimie 83:213-217. (Pubitemid 32243566)
    • (2001) Biochimie , vol.83 , Issue.2 , pp. 213-217
    • Travers, A.1    Schneider, R.2    Muskhelishvili, G.3
  • 82
    • 0034065133 scopus 로고    scopus 로고
    • Escherichia coli response to hydrogen peroxide: A role for DNA supercoiling, topoisomerase I and Fis
    • Weinstein-Fischer, D., M. Elgrably-Weiss, and S. Altuvia. 2000. Escherichia coli response to hydrogen peroxide: A role for DNA supercoiling, topoisomerase I and Fis. Mol. Microbiol. 35:1413-1420.
    • (2000) Mol. Microbiol. , vol.35 , pp. 1413-1420
    • Weinstein-Fischer, D.1    Elgrably-Weiss, M.2    Altuvia, S.3
  • 84
    • 0029080726 scopus 로고
    • Fis activates the RpoS-dependent stationary- phase expression of proP in Escherichia coli
    • Xu, J., and R. C. Johnson. 1995. Fis activates the RpoS-dependent stationary- phase expression of proP in Escherichia coli. J. Bacteriol. 177:5222-5231.
    • (1995) J. Bacteriol. , vol.177 , pp. 5222-5231
    • Xu, J.1    Johnson, R.C.2
  • 85
    • 0030810151 scopus 로고    scopus 로고
    • The membrane-located osmosensory kinase, EnvZ, that contains a leucine zipper-like motif functions as a dimer in Escherichia coli
    • Yaku, H., and T. Mizuno. 1997. The membrane-located osmosensory kinase, EnvZ, that contains a leucine zipper-like motif functions as a dimer in Escherichia coli. FEBS Lett. 417:409-413.
    • (1997) FEBS Lett. , vol.417 , pp. 409-413
    • Yaku, H.1    Mizuno, T.2
  • 86
    • 0642346958 scopus 로고    scopus 로고
    • Proteome analysis of Salmonella enterica serovar typhimurium fis mutant
    • Yoon, H., S. Lim, S. Heu, S. Choi, and S. Ryu. 2003. Proteome analysis of Salmonella enterica serovar typhimurium fis mutant. FEMS Microbiol. Lett. 226:391-396.
    • (2003) FEMS Microbiol. Lett. , vol.226 , pp. 391-396
    • Yoon, H.1    Lim, S.2    Heu, S.3    Choi, S.4    Ryu, S.5
  • 87
    • 33745219470 scopus 로고    scopus 로고
    • Transcription regulation of ompF and ompC by a single transcription factor, OmpR
    • Yoshida, T., L. Qin, L. A. Egger, and M. Inouye. 2006. Transcription regulation of ompF and ompC by a single transcription factor, OmpR. J. Biol. Chem. 281:17114-17123.
    • (2006) J. Biol. Chem. , vol.281 , pp. 17114-17123
    • Yoshida, T.1    Qin, L.2    Egger, L.A.3    Inouye, M.4


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