Semantic similarity measure in biomedical domain leverage Web Search Engine

2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10

Volumn , Issue , 2010, Pages 4436-4439

  Chen, Chi Huang ^a   Hsieh, Sheau Ling ^b   Weng, Yung Ching ^a   Chang, Wen Yung ^b   Lai, Feipei ^a  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^b NATIONAL CHIAO TUNG UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMEDICAL DOMAIN; CORRELATION COEFFICIENT; DATA SETS; LEXICO-SYNTACTIC PATTERNS; NATURAL LANGUAGE PROCESSING; SEMANTIC SIMILARITY; SEMANTIC SIMILARITY MEASURES; SIMILARITY SCORES; WEB SEARCH ENGINES;

COMPUTATIONAL LINGUISTICS; INFORMATION RETRIEVAL; NATURAL LANGUAGE PROCESSING SYSTEMS; RAPID THERMAL ANNEALING; SEARCH ENGINES; SEMANTIC WEB; SEMANTICS;

WORLD WIDE WEB;

ARTICLE; AUTOMATED PATTERN RECOGNITION; DATA MINING; ELECTRONIC MEDICAL RECORD; INTERNET; MEDICAL RECORD; METHODOLOGY; NATURAL LANGUAGE PROCESSING; SEMANTICS;

DATA MINING; ELECTRONIC HEALTH RECORDS; HEALTH RECORDS, PERSONAL; INTERNET; NATURAL LANGUAGE PROCESSING; PATTERN RECOGNITION, AUTOMATED; SEMANTICS;

EID: 78650824834     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IEMBS.2010.5626008     Document Type: Conference Paper

References (25)

1. I. Neamatullah, M.M. Douglass, L.H. Lehman, A. Reisner, M. Villarroel, W J Long, P Szolovits, G.B. Moody, R.G. Mark, G.D. Clifford. "Automated de-identification of free-text medical records," BMC Medical Informatics and Decision Making 8:32 (2008 Jul 24).
2. Tianxia Gong, Chew Lim Tan, Tze Yun Leong, Cheng Kiang Lee, Boon Chuan Pang, C. C. Tchoyoson Lim, Qi Tian, Suisheng Tang, Zhuo Zhang, "Text Mining in Radiology Reports," icdm, pp.815 -820, 2008 Eighth IEEE International Conference on Data Mining, 2008.
3. S. Alexaki, V. Christophides, G. Karvounarakis, D. Plexousakis, K. Tolle, B. Amann, I. Fundulaki, M. Scholl, and A.-M. Vercoustre. Managing RDF Metadata for Community Webs. In Proc. of the ER'00 2nd International Workshop on the World Wide Web and Conceptual Modeling (WCM'00), pages 140-151, Salt Lake City, Utah, 9-12 October 2000.
4. D.L. McGuinness, R. Fikes, J. Rice, and S. Wilder. An Environment for Merging and Testing Large Ontologies. In Proceedings of the 7th International Conference on Principles of Knowledge Representation and Reasoning (KR'00), Breckenridge, Colorado, USA, 12-15 April 2000.
5. D.L. McGuinness, R. Fikes, J. Rice, and S. Wilder. The Chimaera Ontology Environment. In Proc. of the 17th National Conference on Artificial Intelligence (AAAI'00), Austin, Texas, 30 July, 2000.
6. Banko, M., Brill, E.: "Scaling to very very large corpora for natural language disambiguation." Proceedings of the 39th Annual Meeting on Association for Computational Linguistics (2001) 26-33
7. Yunbo Cao and Hang Li: 2002, "Base Noun Phrase Translation Using Web Data and the EM Algorithm", in Proc. of COLING 2002, pp. 127-133.
8. Timothy Chklovski and Patrick Pantel. 2004.VerbOcean, "Mining the Web for Fine-Grained Semantic Verb Relations.", In Proc. Of Conference on Empirical Methods in Natural Language Processing (EMNLP-04). Barcelona, Spain.
9. D. Bollegala, Y. Matsuo, M. Ishizuka, "Measuring semantic similarity between words using web search engines.", WWW 2007, pp. 757-766.
10. Medicine Net .com, http://www.medterms.com/script/main/hp.asp
11. Synonyms.net, http://www.synonyms.net/synonym/
12. Rudi L. Cilibrasi and Paul M.B. Vitanyi. "The Google Similarity Distance", IEEE ITSOC Information Theory Workshop 2005 on Coding and Complexity, 29th Aug. - 1st Sept., 2005
13. J. McCrae, N. Collier., "Synonym set extraction from the biomedical literature by lexical pattern discovery", BMC Bioinformatics 2008.
14. J. Platt. Probabilistic outputs for support vector machines and comparison to regularized likelihood methods. Advances in Large Margin Classifiers, pages 61-74, 2000.
15. Yi-Wei Chen and Chih-Jen Lin. "Combining SVMs with Various Feature Selection Strategies"
16. A. Hliaoutakis, "Semantic similarity measures in MeSH ontology and their application to information retrieval on Medline," Master's thesis, Tech. Univ. Crete, Chania, Crete, 2005.
17. T. Pedersen, S. Pakhomov, and S. Patwardhan, "Measures of semantic similarity and relatedness in the medical domain", J. Biomed. Inf., vol. 40, no. 3, 2007.
18. H. Al-Mubaid, and Hoa A. Nguyen. "Measuring Semantic Similarity Between Biomedical Concepts Within Multiple Ontologies", IEEE Trans. On systems, man, and cybernetics." VOL. 39, JULY 2009.
19. R. Rada, H. Mili, E. Bichnell, and M. Blettner, "Development and application of a metric on semantic nets," IEEE Trans. Syst., Man, Cybern., vol. 9, no. 1, pp. 17-30, Jan./Feb. 1989.
20. C. Leacock and M. Chodorow, "Combining local context and WordNet similarity for word sense identification", in WordNet: An Electronic Lexical Database, C. Fellbaum, Ed. .ERIMENTS
21. Z. Wu and M. Palmer, "Verb semantics and lexical selection," in Proc. 32nd Annu. Meeting Assoc. Comput. Linguistics, 1994, pp. 133-138.
22. Lin D., "An information-theoretic definition of similarity", Proc. of the 15th International Conference on Machine Learning. Madison, 1998.
23. Resnik P. "WordNet and class-based probabilities." Fellbaum C, editor. WordNet: An electronic lexical database. Cambridge, 1998. p. 239-63.
24. Jiang J, Conrath D. Semantic similarity based on corpus statistics and lexical taxonomy. In: Proc. of the 10th international conference on research in computational linguistics, Taipei, Taiwan; 1997. p. 19-33.
25. Ted Pedersen, Serguei V.S. Pakhomov, Siddharth P., Christopher G. Chute. Measures of semantic similarity and relatedness in the biomedical domain Journal of Biomedical Informatics 40 (2007) 288-299.