Construction of a new set of rice chromosome segment substitution lines and identification of grain weight and related traits QTLs

Breeding Science

Volumn 60, Issue 4, 2010, Pages 305-313

  Bian, Jian Min ^a   Jiang, Ling ^a   Liu, Ling Long ^a   Wei, Xiang Jin ^a   Xiao, Yue Hua ^a   Zhang, Lu Jun ^a   Zhao, Zhi Gang ^a   Zhai, Hu Qu ^b   Wan, Jian Min ^a,b  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

1000 grain weight; Chromosome segment substitution lines (CSSLS); Gene mapping; Quantitative trait loci (QTL); Rice

Indexed keywords

JAPONICA;

EID: 78650773611     PISSN: 13447610     EISSN: 13473735     Source Type: Journal    
DOI: 10.1270/jsbbs.60.305     Document Type: Article

References (40)

1. Brondani, C., N. Rangel, V. Brondani and E. Ferreira (2002) QTL mapping and introgression of yield-related traits from Oryza glumaepatula to cultivated rice (Oryza sativa) using microsatellite markers. Theor. Appl. Genet. 104: 1192-1203.
2. Chen, X., S. Temnykh, Y. Xu, Y.G. Cho and S.R. McCouch (1997) Development of a microsatellite framework map providing genomewide coverage in rice (Oryza sativa L.). Ther. Appl. Genet. 95: 553-567.
3. Dellapporta, S.L., J. Wood and J.B. Hicks (1983) A plant DNA minipreparation: Version II. Plant Mol. Biol. Rep. 1: 19-21.
4. Doi, K., N. Iwata and A. Yoshimura (1997) The construction of chromosome substitution lines of African rice (Oryza glaberrima Steud.) in the background of japonica rice (O. sativa L.). Rice Genet. Newsl. 14: 39-40.
5. Ebitani, T., Y. Takeuchi, Y. Nonoue, T. Yamamoto, K. Takeuchi and M. Yano (2005) Construction and evaluation of chromosome segment substitution lines carrying overlapping chromosome segments of indica rice cultivar 'Kasalath' in a genetic background of japonica elite cultivar 'Koshihikari'. Breed. Sci. 55: 65-73.
6. Eshed, Y. and D. Zamir (1995) An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL. Genetics 141: 1147-1162.
7. Gao, Y.M. and J. Zhu (2007) Mapping QTLs with digenic epistasis under multiple environments and predicting heterosis based on QTL effects. Theor. Appl. Genet. 115: 325-333.
8. Gutierrez, A.G., J.S. Carabali, O.X. Giraldo, C.P. Martinez, F. Correa, G. Prado, J. Tohme and M. Lorieux (2010) Identification of a rice stripe necrosis virus resistance locus and yield component QTLs using Oryza sativa × O. glaberrima introgression lines. BMC Plant Biol. 10: 6. doi:10.1186/1471-2229-10-6.
9. Hittalmani, S., N. Huang, B. Courtois, R. Venuprasad, H.E. Shashidhar, J.Y. Zhuang, K.L. Zheng, G.F. Liu, G.C. Wang, J.S. Sidhu et al. (2003) Identification of QTL for growth- and grain yield-related traits in rice across nine locations of Asia. Theor. Appl. Genet. 107: 679-690.
10. Ishimaru, K., T. Kashiwagi, N. Hirotsu and Y. Madoka (2005) Identification and physiological analyses of a locus for rice yield potential across the genetic background. J. Exp. Bot. 56: 2745-2753.
11. Kubo, T., K. Nakamura and A. Yoshimura (1999) Development of a series of Indica chromosome segment substitution lines in Japonica background of rice. Rice Genet. Newsl. 16: 104-106.
12. Kubo, T., Y. Aida, K. Nakamura, H. Tsunematsu, K. Doi and A. Yoshimura (2002) Reciprocal chromosome segment substitution series derived from Japonica and Indica cross of rice (Oryza sativa L.). Breed. Sci. 52: 319-325.
13. Lander, E.S., P. Green, J. Abrahamson, A. Barlow, M.J. Daly, S.E. Lincoln and L.A. Newburg (1987) MAPMAKER: an interactive Computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
14. Li, H., J.M. Ribaut, Z. Li and J. Wang (2008) Inclusive composite interval mapping (ICIM) for digenic epistasis of quantitative traits in biparental populations. Theor. Appl. Genet. 116: 243-260.
15. 2 population from a cross between the parents of an elite rice hybrid. Theor. Appl. Genet. 101: 248-254.
16. Lu, C., L. Shen, Z. Tan, Y. Xu, P. He, Y. Chen and L. Zhu (1997) Comparative mapping of QTLs for agronomic traits of rice across environments by using a doubled-haploid population. Theor. Appl. Genet. 94: 145-150.
17. Madoka, Y., T. Kashiwagi, N. Hirotsu and K. Ishimaru (2008) Indian rice "Kasalath" contains genes that improve traits of Japanese premium rice "Koshihikari". Theor. Appl. Genet. 116: 603-612.
18. McCouch, S.R. (2008) CGSNL (Committee on Gene Symbolization, Nomenclature and Linkage, Rice Genetics Cooperative). Gene nomenclature system for rice. Rice 1: 72-84.
19. McCouch, S.R., L. Teytelman, Y. Xu, K.B. Lobos, K. Clare, M. Walton, B. Fu, R. Maghirang, Z. Li, Y.Z. Xing et al. (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res. 9: 199-207.
20. Mei, H.W., L.J. Luo, C.S. Ying, Y.P. Wang, X.Q. Yu, L.B. Guo, A.H. Paterson and Z.K. Li (2003) Gene actions of QTLs affecting several agronomic traits resolved in a recombinant inbred rice population and two testcross populations. Theor. Appl. Genet. 107: 89-101.
21. Mei, H.W., J.L. Xu, Z.K. Li, X.Q. Yu, L.B. Guo, Y.P. Wang, C.S. Ying and L.J. Luo (2006) QTLs influencing panicle size detected in two reciprocal introgressive line (IL) populations in rice (Oryza sativa L.). Theor. Appl. Genet. 112: 648-656.
22. Nagata, K., Y. Fukuta, H. Shimizu, T. Yagi and T. Terao (2002) Quantitative trait loci for sink size and ripening traits in rice (Oryza sativa L.). Breed. Sci. 52: 259-273.
23. Redona, E.D. and D.J. Mackill (1998) Quantitative trait locus analysis for rice panicle and grain characteristics. Theor. Appl. Genet. 96: 957-963.
24. Shan, J.X., M.Z. Zhu, M. Shi, J.P. Gao and H.X. Lin (2009) Fine mapping and candidate gene analysis of spd6, responsible for small panicle and dwarfness in wild rice (Oryza rufipogon Griff.). Theor. Appl. Genet. 119: 827-836.
25. Shomura, A., T. Izawa, K. Ebana, T. Ebitani, H. Kanegae, S. Konishi and M. Yano (2008) Deletion in a gene associated with grain size increased yields during rice domestication. Nat. Genet. 40: 1023-1028.
26. Song, X.J., W. Huang, M. Shi, M.Z. Zhu and H.X. Lin (2007) A QTL for rice grain width and weight encodes a previously unknown RINGtype E3 ubiquitin ligase. Nat. Genet. 39: 623-630.
27. Tan, L., X. Li, F. Liu, X. Sun, C. Li, Z. Zhu, Y. Fu, H. Cai, X. Wang, D. Xie et al. (2008) Control of a key transition from prostrate to erect growth in rice domestication. Nat. Genet. 40: 1360-1364.
28. Tian, F., Z. Zhu, B. Zhang, L. Tan, Y. Fu, X. Wang and C.Q. Sun (2006a) Fine mapping of a quantitative trait locus for grain number per panicle from wild rice (Oryza rufipogon Griff.). Theor. Appl. Genet. 113: 619-629.
29. Tian, F., D.J. Li, Q. Fu, Z.F. Zhu, Y.C. Fu, X.K. Wang and C.Q. Sun (2006b) Construction of introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (Oryza sativa L.) background and characterization of introgressed segments associated with yield-related traits. Theor. Appl. Genet. 112: 570-580.
30. Tan, Y.F., Y.Z. Xing, J.X. Li, S.B. Yu, C.G. Xu and Q. Zhang (2000) Genetic bases of appearance quality of rice grains in Shanyou 63, an elite rice hybrid. Theor. Appl. Genet. 101:823-829.
31. Van Berloo, R. (1999) GGT: Software for the display of graphical genotypes. J. Hered. 90: 328-329.
32. Wang, J.K., X.Y. Wan, H.H. Li, W.H. Pfeiffer, J. Crouch and J.M. Wan (2007) Application of identified QTL-marker associations in rice quality improvement through a design breeding approach. Theor. Appl. Genet. 115: 87-100.
33. Wang, E., J. Wang, X. Zhu, W. Hao, L. Wang, Q. Li, L. Zhang, W. He, B. Lu, H. Lin et al. (2008) Control of rice grain-filling and yield by a gene with a potential signature of domestication. Nat. Genet. 40: 1370-1374.
34. Xi, Z.Y., F.H. He, R.Z. Zeng, Z.M. Zhang, X.H. Ding, W.T. Li and G.Q. Zhang (2006) Development of a wide population of chromosome single-segment substitution lines in the genetic background of an elite cultivar of rice (Oryza sativa L.). Genome 49: 476-484.
35. Xing, Y.Z., Y.F. Tan, J.P. Hua, X.L. Sun, C.G. Xu and Q. Zhang (2002) Characterization of the main effects, epistatic effects and their environmental interactions of QTLs on the genetic basis of yield traits in rice. Theor. Appl. Genet. 105: 248-257.
36. You, A., X. Lu, H. Jin, X. Ren, K. Liu, G. Yang, H. Yang, L. Zhu and G. He (2006) Identification of quantitative trait loci across recombinant inbred lines and testcross populations for traits of agronomic importance in rice. Genetics 172: 1287-1300.
37. Young, N.D. and S.D. Tanksley (1989) Restriction fragment length polymorphism maps and the concept of graphical genotypes. Theor. Appl. Genet. 77: 95-101.
38. Zhao, Y.V., Z.Y. Yang, Y.L. Wei and Z.X. Zhang (2000) A second discussion on development of northern Japonica hybrid rice from the successful breeding of restorer C418. Hybrid Rice 15: 3-4.
39. Zhu, W.Y., J. Lin, D.W. Yang, L. Zhao, Y.D. Zhang, Z. Zhu, T. Chen and C.L. Wang (2009) Development of chromosome segment substitution lines derived from backcross between two sequenced rice cultivars, Indica recipient 93-11 and Japonica donor Nipponbare. Plant Mol. Biol. Rep. 27: 126-131.
40. Zou, J.S., Y.Z. Li and C.G. LU (2008) Grain yield components and their relation to ecological conditions of two-line hybrid rice Liangyou Peijiu. Hybrid Rice 23: 65-72.